Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jmtyszka/bidskit issues and pull requests

#131 - Blip up/down for multi-echo

Issue - State: open - Opened by zhengchencai 14 days ago

#128 - Files are overwritten on the second pass

Issue - State: open - Opened by gauvinalexandre 8 months ago - 1 comment
Labels: bug

#127 - update Dockerfile to ubuntu:22.04 and related dependencies

Pull Request - State: closed - Opened by LixiangXu 10 months ago - 1 comment

#126 - 125 session flag

Pull Request - State: closed - Opened by jmtyszka 10 months ago

#125 - session flag

Issue - State: closed - Opened by trevorbryanjackson 10 months ago
Labels: feature request

#124 - Added access to a dcm2niix flag for ignoring certain images

Pull Request - State: closed - Opened by vnckppl 10 months ago - 1 comment

#123 - Cannot convert Tilted CT Scan

Issue - State: open - Opened by gauvinalexandre 11 months ago

#122 - Cannot debug bidskit

Issue - State: open - Opened by gauvinalexandre 11 months ago

#120 - Acquisition suffix is duplicated when multiple runs

Issue - State: closed - Opened by gauvinalexandre about 1 year ago - 5 comments

#118 - Error when using --no-sessions option and only one subject is converted

Issue - State: closed - Opened by gauvinalexandre over 1 year ago - 2 comments
Labels: bug

#117 - Second pass issue

Issue - State: open - Opened by CatalinaTLl over 1 year ago - 1 comment
Labels: question

#116 - Not anonymizing

Issue - State: open - Opened by CatalinaTLl over 1 year ago - 1 comment

#115 - Read-the-Docs page is an empty stub

Issue - State: open - Opened by dkp over 1 year ago

#114 - Second pass error : KeyError: 'ScanningSequence'

Issue - State: open - Opened by elPreeto over 1 year ago - 3 comments
Labels: bug

#113 - .bval and .bvec export depends on dwi filename

Issue - State: open - Opened by davidrs06 over 1 year ago - 2 comments

#112 - 'SerDesc' key error

Issue - State: closed - Opened by ChristineFarrugia over 1 year ago - 4 comments

#111 - Second pass error

Issue - State: closed - Opened by hbaagil almost 2 years ago - 6 comments

#110 - Switched to BIDS compliant templates for top-level files like README.md

Pull Request - State: closed - Opened by jmtyszka almost 2 years ago

#109 - default readme in BIDS dataset after conversion

Issue - State: closed - Opened by Remi-Gau almost 2 years ago - 3 comments
Labels: enhancement

#108 - Development

Pull Request - State: closed - Opened by jmtyszka almost 2 years ago

#107 - BIDS validation error for fieldmaps after conversion

Issue - State: closed - Opened by zhengchencai about 2 years ago - 16 comments

#106 - Illegal characters not stripped in BIDS filename key values with --auto

Issue - State: closed - Opened by jmtyszka about 2 years ago - 1 comment
Labels: bug

#105 - Uncompressed but gz extension

Issue - State: closed - Opened by jmtyszka about 2 years ago - 1 comment
Labels: bug

#104 - New 'auto' feature was on by default

Pull Request - State: closed - Opened by alexsayal about 2 years ago - 1 comment

#103 - Update fmaps.py

Pull Request - State: closed - Opened by alexsayal about 2 years ago

#102 - JSON files for magnitude images

Issue - State: closed - Opened by alexsayal about 2 years ago - 1 comment

#101 - Development

Pull Request - State: closed - Opened by jmtyszka about 2 years ago

#100 - Documentation for Injecting New Subjects into BIDS Directory

Issue - State: closed - Opened by claytonjschneider about 2 years ago - 4 comments
Labels: documentation

#99 - Fixed bug following : https://github.com/jmtyszka/bidskit/issues/72

Pull Request - State: closed - Opened by AsliErdemli about 2 years ago - 1 comment

#98 - --bind-fmaps not yet set up to work with --no-sessions

Issue - State: closed - Opened by sarahoh over 2 years ago - 6 comments

#97 - Adding flexibility to --bind-fmaps

Issue - State: open - Opened by sarahoh over 2 years ago
Labels: feature request

#96 - TypeError: can only concatenate list (not "str") to list

Issue - State: closed - Opened by jawaltz over 2 years ago - 6 comments

#95 - adding an option to check Protocol_Translator.json

Issue - State: open - Opened by sarahoh over 2 years ago
Labels: feature request

#94 - Pin pybids version to 0.12.4 for now.

Pull Request - State: closed - Opened by jmtyszka over 2 years ago

#93 - Development

Pull Request - State: closed - Opened by jmtyszka over 2 years ago

#92 - Implement Support for Scans.tsv

Issue - State: open - Opened by claytonjschneider over 2 years ago
Labels: feature request

#91 - Development pull

Pull Request - State: closed - Opened by jmtyszka over 2 years ago

#90 - Adding key to structural scan filenames to indicate bias correction

Issue - State: closed - Opened by sarahoh over 2 years ago - 2 comments
Labels: feature request

#89 - RPE image IntendedFor correcting DWI: IntendedFor field does not populate

Issue - State: closed - Opened by dkp over 2 years ago - 3 comments

#88 - Remove zero-pad from run number

Pull Request - State: closed - Opened by alexsayal over 2 years ago - 1 comment

#87 - Can we anonymize data while converting?

Issue - State: closed - Opened by zhengchencai over 2 years ago - 1 comment

#86 - Issue with 'Intended for' field

Issue - State: closed - Opened by tstoica almost 3 years ago - 3 comments

#85 - Installation told me to ask for help?

Issue - State: closed - Opened by katedamme almost 3 years ago - 1 comment

#84 - --bind_fmaps flag is misidentified in --help menu

Issue - State: closed - Opened by davekahn about 3 years ago - 1 comment

#83 - Compatibility with pybids 0.13.x

Issue - State: closed - Opened by jmtyszka about 3 years ago
Labels: bug, Compatibility

#82 - Pin pybids version to 0.12.4 in Dockerfile

Pull Request - State: closed - Opened by alexenge about 3 years ago - 1 comment

#81 - Running bidskit via Docker image fails due to pybids update

Issue - State: closed - Opened by alexenge about 3 years ago

#80 - Detect TaskName for seq_name other than 'EP'

Pull Request - State: closed - Opened by alexenge about 3 years ago - 1 comment

#79 - Passing custom options to dcm2niix

Issue - State: closed - Opened by alexenge about 3 years ago - 1 comment
Labels: feature request

#78 - Development

Pull Request - State: closed - Opened by jmtyszka about 3 years ago

#77 - UnicodeDecodeError: ascii codec can't decode

Issue - State: closed - Opened by hpsaarimaki over 3 years ago - 4 comments

#76 - Sanity check for duplicate output filenames

Issue - State: closed - Opened by jmtyszka over 3 years ago - 1 comment
Labels: enhancement, feature request

#75 - Issues with BOLD SBRefs

Issue - State: closed - Opened by davekahn over 3 years ago - 2 comments
Labels: feature request

#74 - Flag on initial run without sourcedata directory

Issue - State: closed - Opened by davekahn almost 4 years ago - 1 comment
Labels: feature request

#73 - Mishandling GRE fieldmaps when individual echo phase images present

Issue - State: closed - Opened by jmtyszka almost 4 years ago - 1 comment
Labels: bug

#72 - run- label issue with anat-entity.

Issue - State: closed - Opened by JasonProtoMe over 4 years ago - 2 comments
Labels: bug, feature request

#71 - DICOMDIR as input

Issue - State: closed - Opened by alexsayal over 4 years ago - 1 comment
Labels: feature request

#70 - More than one sequence with the same name

Issue - State: closed - Opened by alexsayal over 4 years ago - 5 comments
Labels: bug

#69 - Automatic update of protocol_translator when adding new sourcedata?

Issue - State: open - Opened by hippocampo over 4 years ago - 1 comment
Labels: feature request

#68 - typo - missing quote

Pull Request - State: closed - Opened by dmd over 4 years ago

#67 - clarification on sourcedata requirements

Issue - State: closed - Opened by dmd over 4 years ago - 8 comments
Labels: bug, question

#66 - Docker build . fails in pybids install

Issue - State: closed - Opened by dmd over 4 years ago - 2 comments

#65 - Update dependencies

Pull Request - State: closed - Opened by pn2200 over 4 years ago - 2 comments

#64 - ImportError: No module named 'bids'

Issue - State: closed - Opened by pn2200 over 4 years ago - 2 comments
Labels: bug

#63 - Update docker run command in QuickStart

Pull Request - State: closed - Opened by pn2200 over 4 years ago

#62 - KeyError

Issue - State: closed - Opened by hippocampo over 4 years ago - 3 comments

#61 - Subject/session names cannot contain "-" or "_"

Issue - State: closed - Opened by villalonreina almost 5 years ago - 2 comments

#60 - bidskit 1.2.3 not completing 1st pass file conversions

Issue - State: closed - Opened by idroberts almost 5 years ago - 2 comments

#59 - subject flag

Issue - State: closed - Opened by doritdorit almost 5 years ago - 2 comments
Labels: feature request

#58 - Error with first pass

Issue - State: closed - Opened by trevorbryanjackson almost 5 years ago - 3 comments
Labels: bug

#57 - Development

Pull Request - State: closed - Opened by jmtyszka about 5 years ago

#56 - Development

Pull Request - State: closed - Opened by jmtyszka about 5 years ago

#54 - v1.2.1 Add check for external bids-validator

Pull Request - State: closed - Opened by jmtyszka over 5 years ago

#53 - Bids 1.2

Pull Request - State: closed - Opened by jmtyszka over 5 years ago

#52 - source & derivatives naming scheme

Issue - State: closed - Opened by jcrdubois over 5 years ago - 2 comments
Labels: enhancement

#51 - fix run ordering

Pull Request - State: closed - Opened by jcrdubois over 5 years ago - 1 comment

#49 - events.tsv not properly created

Issue - State: closed - Opened by Jihyuncindyhur over 5 years ago - 1 comment

#48 - run order not preserved

Issue - State: closed - Opened by yonestar over 5 years ago - 3 comments

#46 - .gz files not actually gzipped

Issue - State: closed - Opened by zanderso13 over 5 years ago - 6 comments

#44 - Enhance field map support

Pull Request - State: closed - Opened by rhancockn over 5 years ago

#43 - IntendedFor should populate only if the file pointed at exists

Issue - State: closed - Opened by argyelan over 5 years ago
Labels: feature request

#42 - participants.tsv and keys in dict handled better

Pull Request - State: closed - Opened by argyelan almost 6 years ago

#41 - To make it compatible with hub.docker.com autobuild

Pull Request - State: closed - Opened by argyelan almost 6 years ago

#40 - Updating dcm2bids.py to be compatible with sbref in dwi

Pull Request - State: closed - Opened by argyelan almost 6 years ago - 1 comment

#39 - Issue with fieldmap conversion

Issue - State: closed - Opened by tragus1 about 6 years ago - 6 comments

#38 - UnicodeDecodeError: ascii codec can't decode

Issue - State: closed - Opened by laurenbreithaupt about 6 years ago - 3 comments

#37 - IntendedFor should include ses-XX prefix

Issue - State: closed - Opened by yonestar about 6 years ago - 1 comment
Labels: feature request

#36 - IntendedFor field with multiple targets

Issue - State: closed - Opened by yonestar about 6 years ago - 2 comments
Labels: bug

#35 - docker conversion

Issue - State: closed - Opened by tragus1 about 6 years ago - 2 comments

#34 - Use python3 rather than generic python interpreter

Pull Request - State: closed - Opened by celstark over 6 years ago - 1 comment

#33 - IntendedFor field in json does not have 'run-0X' in filename

Issue - State: closed - Opened by yonestar over 6 years ago - 2 comments

#32 - run order not preserved

Issue - State: closed - Opened by yonestar over 6 years ago - 2 comments
Labels: bug