jmschrei/tangermeme issues and pull requests

#26 - Add more functionality for unknown characters

Pull Request - State: open - Opened by lauradmartens 7 days ago

#25 - Allow N to be encoded with 0.25 and add allow_N to ersatz functions

Issue - State: open - Opened by lauradmartens 7 days ago - 2 comments

#24 - Seqlet calling issues

Issue - State: open - Opened by bovagner 27 days ago - 2 comments

#23 - Edgecase: seqlet calling with additional flanks at the beginning of sequences

Issue - State: open - Opened by Vejni 29 days ago

#22 - TypingError using annotate_seqlets/tomtom

Issue - State: closed - Opened by shirondru about 1 month ago - 15 comments

#21 - tangermeme cli error `ModuleNotFoundError: No module named '_tomtom'`

Issue - State: open - Opened by simozhou about 1 month ago - 1 comment

#20 - Reverse complement function added to ersatz

Pull Request - State: closed - Opened by Al-Murphy about 2 months ago - 4 comments

#19 - Expected input shape error when using (B, W, C) convention

Issue - State: closed - Opened by LukasMahieu about 2 months ago - 2 comments

#18 - Error with FIMO hits() call, index out of bounds

Issue - State: open - Opened by Al-Murphy 3 months ago

#17 - Error in plot_logo - LogomakerError: type(floor) = <class 'numpy.float32'> must be a number

Issue - State: open - Opened by Al-Murphy 3 months ago - 3 comments

#16 - enable N return in characters()

Pull Request - State: closed - Opened by Al-Murphy 3 months ago - 1 comment

#15 - enable N return in characters()

Pull Request - State: closed - Opened by Al-Murphy 3 months ago - 7 comments

#14 - space function

Issue - State: open - Opened by bovagner 3 months ago

#13 - Convergence Deltas for DeepLIFT still too high (even after accounting for or deactivating all non-linearities)

Issue - State: closed - Opened by aaronmaiww 3 months ago - 10 comments

#12 - fix a small bug for corner case in match

Pull Request - State: closed - Opened by wang3702 4 months ago - 1 comment

#11 - Update match.py

Pull Request - State: closed - Opened by bovagner 4 months ago - 13 comments

#10 - Update match.py

Pull Request - State: closed - Opened by bovagner 4 months ago - 1 comment

#9 - Update match.py

Pull Request - State: closed - Opened by adamyhe 5 months ago - 1 comment

#8 - DeepSEA Beluga model in tutorial

Issue - State: closed - Opened by maplecai 5 months ago - 6 comments

#7 - Non ACGTN characters in FASTA cause error with `one_hot_encode` in `extract_matching_loci`

Issue - State: closed - Opened by adamklie 5 months ago - 2 comments

#6 - Tiny verbosity fix in FIMO

Pull Request - State: closed - Opened by johahi 6 months ago - 1 comment

#5 - plot_logo fails when using annotations without specifying start and end arguments.

Issue - State: closed - Opened by sandyfloren 6 months ago - 3 comments

#4 - bpnet or per nucleotide output handling in tangermeme?

Issue - State: closed - Opened by DavidvanBruggen 6 months ago - 2 comments

#3 - Attentionpooling nonlinear_ops

Issue - State: open - Opened by Vejni 6 months ago - 7 comments

#2 - Documentation on machine precision could use clarification

Issue - State: closed - Opened by sandyfloren 6 months ago - 2 comments

#1 - Attribution

Pull Request - State: closed - Opened by jmschrei 7 months ago

Ecosyste.ms: Issues

GitHub / jmschrei/tangermeme issues and pull requests