Ecosyste.ms: Issues

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GitHub / jmschrei/bpnet-lite issues and pull requests

#16 - Chrombpnet model conversion

Issue - State: open - Opened by TFHan 6 days ago - 4 comments

#15 - "interpret" -> "attribute"

Pull Request - State: open - Opened by adamyhe about 1 month ago

#14 - Update setup.py

Pull Request - State: closed - Opened by adamyhe 4 months ago - 1 comment

#13 - VRAM issues in ChromBPNet.fit

Issue - State: open - Opened by adamyhe 4 months ago - 1 comment

#12 - Calling hits with FiNeMo / marginalize?

Issue - State: open - Opened by gregorydonahue 5 months ago - 2 comments

#11 - ATAC-seq pre-processing: shifting tags

Issue - State: closed - Opened by gregorydonahue 5 months ago - 2 comments

#10 - Error in running bpnet negatives / tangermeme match.py issues

Issue - State: closed - Opened by gregorydonahue 5 months ago - 4 comments

#8 - output dtype error in bpnet negatives

Issue - State: closed - Opened by adamyhe 5 months ago - 2 comments

#7 - Practical limit on # input peaks

Issue - State: closed - Opened by gregorydonahue 6 months ago - 2 comments

#6 - Reasonable values for beta parameter in ATAC-seq chrombpnet run

Issue - State: closed - Opened by gregorydonahue 6 months ago - 3 comments

#5 - updated paddding from int to tuple

Pull Request - State: closed - Opened by adamklie 6 months ago - 6 comments

#4 - Error in printing model loaded from chrombpnet package

Issue - State: closed - Opened by adamklie 6 months ago

#2 - TOMTOM missed

Issue - State: closed - Opened by wang3702 about 1 year ago - 4 comments

#1 - Question: does BPNet code support any seq length?

Issue - State: open - Opened by vitkl over 1 year ago - 22 comments