jmbuhr/shinylipids issues and pull requests

#63 - [draft] just to see changes

Pull Request - State: closed - Opened by jmbuhr about 1 year ago

#63 - [draft] just to see changes

Pull Request - State: closed - Opened by jmbuhr about 1 year ago

#62 - Lipid amounts in micromolar

Issue - State: open - Opened by ddkale almost 2 years ago - 2 comments

#62 - Lipid amounts in micromolar

Issue - State: open - Opened by ddkale almost 2 years ago - 2 comments

#61 - behaviour of technical replicates is strange

Issue - State: closed - Opened by luechtian about 4 years ago

#61 - behaviour of technical replicates is strange

Issue - State: closed - Opened by luechtian about 4 years ago

#60 - Plotly legend overlaps with barplot

Issue - State: open - Opened by luechtian about 4 years ago - 2 comments
Labels: help wanted, good first issue, feature

#60 - Plotly legend overlaps with barplot

Issue - State: open - Opened by luechtian about 4 years ago - 2 comments
Labels: help wanted, good first issue, feature

#59 - Add new versions of golem dev scripts for faster developement

Issue - State: open - Opened by jmbuhr over 4 years ago

#59 - Add new versions of golem dev scripts for faster developement

Issue - State: open - Opened by jmbuhr over 4 years ago

#58 - Write vignettes

Pull Request - State: closed - Opened by jmbuhr over 4 years ago

#57 - pca model different now?

Issue - State: closed - Opened by luechtian over 4 years ago - 1 comment
Labels: question

#57 - pca model different now?

Issue - State: closed - Opened by luechtian over 4 years ago - 1 comment
Labels: question

#56 - Save-buttons are not working properly after first download

Issue - State: closed - Opened by luechtian over 4 years ago - 2 comments
Labels: bug

#56 - Save-buttons are not working properly after first download

Issue - State: closed - Opened by luechtian over 4 years ago - 2 comments
Labels: bug

#55 - "Reset everything"-button deletes cholesterol from db

Issue - State: closed - Opened by luechtian over 4 years ago - 1 comment
Labels: bug

#55 - "Reset everything"-button deletes cholesterol from db

Issue - State: closed - Opened by luechtian over 4 years ago - 1 comment
Labels: bug

#54 - Add UMAP to dimensionality reduction tab

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature

#53 - Refactor functions with default values

Issue - State: closed - Opened by jmbuhr over 4 years ago

#53 - Refactor functions with default values

Issue - State: closed - Opened by jmbuhr over 4 years ago

#52 - Evaluate pointsize of main plot

Issue - State: closed - Opened by jmbuhr over 4 years ago

#51 - Add boxplot and violin plot

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature

#51 - Add boxplot and violin plot

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature

#50 - Move standardize to sample replicate into a checkbox

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature

#50 - Move standardize to sample replicate into a checkbox

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature

#49 - label for heatmap colorscale is not refreshed

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug

#49 - label for heatmap colorscale is not refreshed

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug

#48 - log transformaition option for heatmap

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: feature

#48 - log transformaition option for heatmap

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: feature

#47 - ggplot2::expand_scale is deprecated

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: bug

#47 - ggplot2::expand_scale is deprecated

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: bug

#46 - download-filename of plots and csvs has the wrong default value

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug

#45 - Add explanations for features like chain sums

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: optional

#45 - Add explanations for features like chain sums

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: optional

#44 - Fix: Impute missing values resets filters

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: bug

#44 - Fix: Impute missing values resets filters

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: bug

#43 - Add written tutorial showing a simple class profile

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: documentation

#43 - Add written tutorial showing a simple class profile

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: documentation

#42 - N-per sample is often not visible

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug

#41 - Evaluate ggplotly and drop zooming in ggplot

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: feature

#40 - Add flowchart to documentation

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: documentation

#40 - Add flowchart to documentation

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: documentation

#39 - Fix: crashes when selecting the same thing for facet and x-axis or color

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug

#39 - Fix: crashes when selecting the same thing for facet and x-axis or color

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug

#38 - Add t-tests for species profile

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug

#37 - Add interactive tutorial via `rintrojs`

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature, documentation

#36 - Add plot captions with selected options and title

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature

#36 - Add plot captions with selected options and title

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: feature

#35 - Selecting a quickoption should reset everything

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: bug

#35 - Selecting a quickoption should reset everything

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: bug

#34 - Add reset button for everything (refactor as function)

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: feature

#33 - Add textbox under Quickmenu buttons with explanations

Issue - State: open - Opened by jmbuhr over 4 years ago
Labels: documentation

#32 - Replace pcaMethods with base R / tidymodels

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: feature

#32 - Replace pcaMethods with base R / tidymodels

Issue - State: closed - Opened by jmbuhr over 4 years ago - 1 comment
Labels: feature

#31 - TODO before release

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug, essential

#31 - TODO before release

Issue - State: closed - Opened by jmbuhr over 4 years ago
Labels: bug, essential

#30 - Import option for LM_IDs instead of lipid names

Issue - State: open - Opened by jmbuhr almost 5 years ago
Labels: optional, feature

#29 - Add ID in Dropdown Menu for Dataset

Issue - State: closed - Opened by jmbuhr almost 5 years ago
Labels: essential, feature

#29 - Add ID in Dropdown Menu for Dataset

Issue - State: closed - Opened by jmbuhr almost 5 years ago
Labels: essential, feature

#28 - 0% Shows up twice on y axis in some cases

Issue - State: closed - Opened by jmbuhr almost 5 years ago - 1 comment
Labels: bug, essential

#27 - Add Default Buttons

Issue - State: closed - Opened by jmbuhr almost 5 years ago

#27 - Add Default Buttons

Issue - State: closed - Opened by jmbuhr almost 5 years ago

#26 - Make standardization within replicates default and as a checkbox

Issue - State: closed - Opened by jmbuhr almost 5 years ago
Labels: bug, essential

#26 - Make standardization within replicates default and as a checkbox

Issue - State: closed - Opened by jmbuhr almost 5 years ago
Labels: bug, essential

#25 - Dev todo

Pull Request - State: closed - Opened by jmbuhr almost 6 years ago

#25 - Dev todo

Pull Request - State: closed - Opened by jmbuhr almost 6 years ago

#24 - add Apply button for filtering and sample selection

Issue - State: open - Opened by jmbuhr almost 6 years ago
Labels: optional, feature

#23 - add in-app ordering for samples

Issue - State: open - Opened by jmbuhr almost 6 years ago
Labels: optional, feature

#22 - TODO

Issue - State: closed - Opened by jmbuhr almost 6 years ago - 1 comment
Labels: bug, essential, feature

#22 - TODO

Issue - State: closed - Opened by jmbuhr almost 6 years ago - 1 comment
Labels: bug, essential, feature

#21 - Need options to properly work with log-transformed values

Issue - State: closed - Opened by jmbuhr about 6 years ago - 1 comment

#21 - Need options to properly work with log-transformed values

Issue - State: closed - Opened by jmbuhr about 6 years ago - 1 comment

#20 - Better axis labels and legend titles

Issue - State: closed - Opened by jmbuhr about 6 years ago
Labels: essential

#19 - Updating SelecticeInputs leads to multiple excecution of plotting

Issue - State: closed - Opened by jmbuhr about 6 years ago
Labels: bug

#18 - implement PCA

Issue - State: closed - Opened by jmbuhr about 6 years ago - 1 comment
Labels: essential

#17 - Fix baseline substraction

Issue - State: closed - Opened by jmbuhr about 6 years ago
Labels: bug

#17 - Fix baseline substraction

Issue - State: closed - Opened by jmbuhr about 6 years ago
Labels: bug

#16 - Should standardization occur before or after filtering?

Issue - State: closed - Opened by jmbuhr about 6 years ago - 3 comments
Labels: question

#15 - fix axis labels

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: bug

#15 - fix axis labels

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: bug

#14 - checkbox to fix scales in facetting potentially usefull

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: optional

#14 - checkbox to fix scales in facetting potentially usefull

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: optional

#13 - better colors

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: optional

#12 - add other plot types

Issue - State: closed - Opened by jmbuhr over 6 years ago
Labels: essential

#11 - add heatmap

Issue - State: closed - Opened by jmbuhr over 6 years ago
Labels: essential

#10 - fix color scheme for more than 8 colors

Issue - State: closed - Opened by jmbuhr over 6 years ago
Labels: bug

#9 - add labeling options with ggrepel

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: feature

#8 - add defaults

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: optional

#7 - add theme to mainPlot

Issue - State: closed - Opened by jmbuhr over 6 years ago

#6 - further subsetting of select options for sample selection

Issue - State: closed - Opened by jmbuhr over 6 years ago
Labels: optional

#5 - enable sample subsetting

Issue - State: closed - Opened by jmbuhr over 6 years ago
Labels: essential

#4 - Integrate Plotting Options

Issue - State: closed - Opened by jmbuhr over 6 years ago
Labels: essential

#3 - Enable NULL for options

Issue - State: closed - Opened by jmbuhr over 6 years ago
Labels: essential

#2 - Summarize function based on what's to plot

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: essential

#1 - Cards

Issue - State: closed - Opened by jmbuhr over 6 years ago - 1 comment
Labels: essential

GitHub / jmbuhr/shinylipids issues and pull requests