Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jjtimmons/repp issues and pull requests

#68 - Bump addressable from 2.6.0 to 2.8.1 in /docs

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#67 - Bump tzinfo from 1.2.5 to 1.2.10 in /docs

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#66 - Bump nokogiri from 1.10.3 to 1.13.6 in /docs

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#65 - Bump nokogiri from 1.10.3 to 1.13.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#64 - Bump nokogiri from 1.10.3 to 1.13.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#63 - Bump nokogiri from 1.10.3 to 1.12.5 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#62 - Bump addressable from 2.6.0 to 2.8.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#61 - Bump nokogiri from 1.10.3 to 1.11.5 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#60 - Bump rake from 12.3.2 to 12.3.3 in /docs

Pull Request - State: open - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#59 - Bump nokogiri from 1.10.3 to 1.10.8 in /docs

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#58 - Bump rubyzip from 1.2.3 to 2.0.0 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 5 years ago
Labels: dependencies

#57 - Bump nokogiri from 1.10.3 to 1.10.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago - 1 comment
Labels: dependencies

#56 - fix docs auto-generator

Issue - State: closed - Opened by jjtimmons over 5 years ago - 1 comment

#55 - flag for Genbank file output

Issue - State: open - Opened by jjtimmons over 5 years ago

#54 - Refactor backbone digestion

Issue - State: closed - Opened by jjtimmons over 5 years ago

#53 - Fix FWD design

Issue - State: closed - Opened by jjtimmons almost 6 years ago
Labels: bug

#52 - debug feature engineering test case

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#51 - flag for ls sequence to specify that it's circular

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#50 - flag for forcing solutions using user defined backbone

Issue - State: open - Opened by jjtimmons almost 6 years ago

#49 - Found solutions are more expensive than synthesizing the insert

Issue - State: closed - Opened by jjtimmons almost 6 years ago - 1 comment
Labels: bug

#48 - add enzyme and cutsite to the output payload

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#47 - make the ntthal calculation aboslute

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#46 - Add gaps to mismatch/identity calculation

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#45 - sequence/feature design without a specified backbone

Issue - State: open - Opened by jjtimmons almost 6 years ago - 1 comment

#44 - fix cross over primer sequence for pcr fragments

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#43 - blast match direction effects

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#42 - add output to genbank

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#41 - add warnings for hairpins in assembly fragments

Issue - State: closed - Opened by jjtimmons almost 6 years ago

#40 - filter -> include,exclude

Issue - State: closed - Opened by jjtimmons about 6 years ago

#39 - fix app commands

Issue - State: closed - Opened by jjtimmons about 6 years ago

#35 - make queryDatabases concurrent

Issue - State: closed - Opened by jjtimmons about 6 years ago

#34 - accept Genbank format for 'defrag vector'

Issue - State: closed - Opened by jjtimmons about 6 years ago

#33 - add error handling for excessively large fragments/genes

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#32 - feature based reverse engineering

Issue - State: open - Opened by jjtimmons about 6 years ago

#31 - fix synthesis cost estimate

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#30 - break in assembly.add() if past one seq length beyond start

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#29 - fix time and cost formatting

Issue - State: closed - Opened by jjtimmons about 6 years ago

#28 - hairpins in overlap regions

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#27 - use /tmp and or TMPDIR

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#26 - limitations

Issue - State: closed - Opened by jjtimmons about 6 years ago

#25 - add igem repository

Issue - State: closed - Opened by jjtimmons about 6 years ago

#24 - backlog

Issue - State: open - Opened by jjtimmons about 6 years ago

#23 - support for backbones

Issue - State: closed - Opened by jjtimmons about 6 years ago

#21 - fix off-target checking so it checks the actual parent database

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment
Labels: bug

#20 - allow embedding of non-homology sequence in primers (<8bp)

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#19 - don't filter free fragments in blast.filter

Issue - State: closed - Opened by jjtimmons about 6 years ago

#18 - don't PCR a vector that matches 100%

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#16 - avoid bad primers

Issue - State: closed - Opened by jjtimmons about 6 years ago

#15 - make output optional, infer from input if it's absent

Issue - State: closed - Opened by jjtimmons about 6 years ago - 1 comment

#13 - turn addgene vector ids back into url's to the addgene site

Issue - State: closed - Opened by jjtimmons about 6 years ago

#12 - allow "stiching" of regions between others (60 - 150bp)

Issue - State: open - Opened by jjtimmons about 6 years ago

#11 - allow inclusion and reference to local repositories

Issue - State: closed - Opened by jjtimmons about 6 years ago

#10 - add costs to Addgene vector sources

Issue - State: closed - Opened by jjtimmons about 6 years ago

#9 - Add back solution cost estimation

Issue - State: closed - Opened by jjtimmons about 6 years ago

#7 - calculate synthetic fragment cost by size

Issue - State: closed - Opened by jjtimmons over 6 years ago

#6 - let primers contain mutation gapped by small mismatch between fragments

Issue - State: closed - Opened by jjtimmons over 6 years ago - 1 comment

#5 - keep homology arms between fragments below a maximum length

Issue - State: closed - Opened by jjtimmons over 6 years ago

#4 - inverted repeats in the junction arms

Issue - State: closed - Opened by jjtimmons over 6 years ago - 2 comments

#3 - duplicate homology/junction avoidance

Issue - State: closed - Opened by jjtimmons over 6 years ago - 1 comment

#2 - logo

Issue - State: closed - Opened by jjtimmons over 6 years ago - 1 comment

#1 - distribution

Issue - State: closed - Opened by jjtimmons over 6 years ago