Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jhuapl-bio/taxtriage issues and pull requests

#45 - Workflow didn't finish

Issue - State: open - Opened by erinyoung about 1 year ago - 11 comments
Labels: bug

#44 - There are log of warning and channel.view() lines that get printed to the screen while running.

Issue - State: closed - Opened by erinyoung about 1 year ago - 1 comment
Labels: bug

#43 - NCBI Retry and Reference Download

Pull Request - State: closed - Opened by tasapl about 1 year ago

#42 - Adding Submodule - Gene prediction and annotation for mapped reads

Issue - State: open - Opened by Merritt-Brian over 1 year ago
Labels: enhancement

#41 - Aggregate Multi Contig/Accession/Chromosome Stats per Sample & Taxa

Issue - State: open - Opened by Merritt-Brian over 1 year ago
Labels: enhancement

#40 - Retry NCBI Reference Pulls

Issue - State: open - Opened by Merritt-Brian over 1 year ago
Labels: enhancement

#39 - Metaphlan

Pull Request - State: open - Opened by tasapl over 1 year ago

#38 - allow clean fastq.gz

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#37 - Adding samtools coverage, skip failed genome pulls

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#35 - adding multiqc table rows max

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#34 - Add Nanoplot/Fastq as outputs to Tower YAML file

Issue - State: closed - Opened by Merritt-Brian over 1 year ago
Labels: enhancement, low_priority

#33 - Add preliminary step: Host Removal via Alignment

Issue - State: closed - Opened by Merritt-Brian over 1 year ago - 1 comment
Labels: enhancement, medium_priority

#32 - Merge process memory needs

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#31 - Merge nf tower changes

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#30 - Add Kaiju classification approach

Issue - State: open - Opened by Merritt-Brian over 1 year ago
Labels: enhancement, low_priority

#29 - Merge defaults

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#28 - top_hits.nf seems to have wrong number of arguments

Issue - State: open - Opened by hkunerth over 1 year ago - 8 comments
Labels: bug, high_priority

#27 - Add Centrifuge and metaPhlan2

Issue - State: open - Opened by Merritt-Brian over 1 year ago - 2 comments
Labels: enhancement, medium_priority

#26 - Merging Main fixes

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#25 - Separate accession cols and create reports by rank

Pull Request - State: closed - Opened by tasapl over 1 year ago

#24 - RE-implement BLAST refinement strategies

Issue - State: open - Opened by Merritt-Brian over 1 year ago
Labels: enhancement, low_priority

#23 - changed singularity container to include wget https support

Pull Request - State: closed - Opened by gunarsosis over 1 year ago - 1 comment

#22 - confidences.merged_mqc.tsv does not incorporate into the MultiQC

Issue - State: closed - Opened by gunarsosis over 1 year ago - 4 comments
Labels: bug, high_priority

#21 - merge main v1.01 stable

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#20 - Improvement: Speed of SPLIT_VCF

Issue - State: closed - Opened by Merritt-Brian over 1 year ago - 1 comment
Labels: enhancement

#19 - Merge main to stable

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#18 - Split up the acc and index columns for the kraken report and confidence report

Issue - State: closed - Opened by Merritt-Brian over 1 year ago
Labels: enhancement

#16 - Confidence Metrics fails for tsv files with mismatched column count

Issue - State: closed - Opened by Merritt-Brian over 1 year ago
Labels: bug

#15 - Merge Main to Stable

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#14 - adding

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#13 - Merge main into stable

Pull Request - State: closed - Opened by Merritt-Brian over 1 year ago

#11 - spades hmm and paired illumina fixes

Pull Request - State: closed - Opened by tasapl over 1 year ago - 1 comment

#10 - Download db flag

Pull Request - State: closed - Opened by hannahgooden over 1 year ago

#9 - Check samplesheet fix

Pull Request - State: closed - Opened by gunarsosis over 1 year ago

#8 - Unmapped variable "ch_spades_hmm"

Issue - State: closed - Opened by hkunerth almost 2 years ago - 2 comments
Labels: bug

#7 - Dev

Pull Request - State: closed - Opened by Merritt-Brian over 2 years ago

#6 - Issue running TaxTriage in basestack

Issue - State: closed - Opened by garfinjm over 2 years ago - 9 comments
Labels: bug

#5 - Dev

Pull Request - State: closed - Opened by Merritt-Brian over 2 years ago

#4 - adding submodules

Pull Request - State: closed - Opened by Merritt-Brian over 2 years ago

#3 - Dev

Pull Request - State: closed - Opened by Merritt-Brian over 2 years ago

#2 - remove some large files and dangling unneeded files

Pull Request - State: closed - Opened by Merritt-Brian over 2 years ago - 1 comment

#1 - Dev

Pull Request - State: closed - Opened by Merritt-Brian over 2 years ago - 1 comment