Ecosyste.ms: Issues

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GitHub / jgx65/hierfstat issues and pull requests

#73 - Negative kinship values with beta.dosage?

Issue - State: closed - Opened by alexkrohn 4 months ago - 3 comments

#72 - no issue. Structure output is correct, two rows/individual.

Issue - State: closed - Opened by iLAMtools 5 months ago - 1 comment

#71 - boot.ppfst

Issue - State: closed - Opened by Erikacj 6 months ago - 6 comments

#70 - plotting the kinship matrix and printing it

Issue - State: closed - Opened by alasousi85 7 months ago - 3 comments

#69 - NaN as result of basic.stats calculations for small populations

Issue - State: closed - Opened by JoulesOLVERA 8 months ago - 2 comments

#68 - Treatment of populations of 1

Issue - State: open - Opened by sbreitbart 10 months ago - 10 comments

#67 - non-numeric argument error in boot.ppfis

Issue - State: open - Opened by jaflury 12 months ago - 5 comments

#66 - pairwise.WCfst Error - non-conformable arrays

Issue - State: closed - Opened by silknets over 1 year ago - 3 comments

#64 - How to Interpret Negative Fsts

Issue - State: closed - Opened by alexkrohn over 1 year ago - 2 comments

#63 - NeiFST_calcuation_error

Issue - State: closed - Opened by laxmangene7 over 1 year ago - 2 comments

#62 - Fis calculations in basic.stats and boot.ppfis differ

Issue - State: closed - Opened by pygmyperch almost 2 years ago - 4 comments

#61 - boot.ppfst throwing an error with "diploid=F"

Issue - State: closed - Opened by lchall08 about 2 years ago - 4 comments

#60 - `basic.stats` Ho calculation is actually allele frequency

Issue - State: closed - Opened by eilishmcmaster about 2 years ago - 4 comments

#59 - problem performing sex.biased.test() function

Issue - State: closed - Opened by danielsangarci over 2 years ago - 3 comments

#58 - allelic.richness rounded numbers

Issue - State: closed - Opened by Gillous over 2 years ago - 3 comments

#56 - Conversion genind to hierfstat df a little inconsistent

Issue - State: closed - Opened by courtiol over 2 years ago - 2 comments

#55 - plot boot.ppfst

Issue - State: closed - Opened by andreiaamaral over 2 years ago - 4 comments

#54 - Calculating FST with Dosage and Missing Data

Issue - State: closed - Opened by alexkrohn over 2 years ago - 5 comments

#53 - Parallelizing genet.dist() ?

Issue - State: closed - Opened by alexkrohn over 2 years ago - 2 comments

#52 - gstat.randtest missing

Issue - State: open - Opened by osowiecki almost 3 years ago - 4 comments

#51 - write.ped() removes first locus from hierfstat object

Issue - State: closed - Opened by DaniEstevezBarcia almost 3 years ago - 5 comments

#50 - Genet.dist not keeping population names

Issue - State: closed - Opened by jennagrimshaw almost 3 years ago - 3 comments

#49 - estimated Fis value outside of bootstrapped CIs

Issue - State: closed - Opened by casparbein over 3 years ago - 7 comments

#48 - Inconsistency in genet.dist function

Issue - State: closed - Opened by akamolphat over 3 years ago - 3 comments

#47 - problem of pop.freq in pairwise.WCfst

Issue - State: closed - Opened by themrca over 3 years ago - 2 comments

#46 - write.struct documentation

Issue - State: closed - Opened by plantarum over 3 years ago - 2 comments

#45 - Cannot install package...

Issue - State: closed - Opened by dylanHco over 3 years ago - 2 comments

#44 - explanation of behavior

Issue - State: closed - Opened by pdimens over 3 years ago - 3 comments

#43 - boot.ppfst

Issue - State: closed - Opened by jwwhale over 3 years ago - 6 comments

#42 - getal seems to require ordered population labels

Issue - State: closed - Opened by falseflattortuga over 3 years ago - 3 comments

#41 - Cannot calculate global Fst with confidence intervals

Issue - State: closed - Opened by TharinduTS almost 4 years ago - 6 comments

#40 - Impossible to find "fstat" function

Issue - State: closed - Opened by Vsonn almost 4 years ago - 2 comments

#39 - 2 funny problems when i use HierFstat

Issue - State: closed - Opened by zxy1555847 almost 4 years ago - 1 comment

#38 - I can‘t find the example file（ “examplehier.txt”）

Issue - State: closed - Opened by zxy1555847 almost 4 years ago - 1 comment

#37 - confidence intervals for average betas (pairwise FST)

Issue - State: closed - Opened by afontcub about 4 years ago - 2 comments

#36 - betas.Rd

Issue - State: closed - Opened by yasfoster over 4 years ago - 8 comments

#35 - Problems estimating observed heterozygosity

Issue - State: closed - Opened by EJFuchs over 4 years ago - 1 comment

#34 - fix bug in getal.b

Pull Request - State: open - Opened by timflutre over 4 years ago

#32 - pairwise.WCfst Error in 1:sum(data[, 1] == i) : NA/NaN argument

Issue - State: closed - Opened by piotyama over 4 years ago - 2 comments

#31 - hierfstat::boot.ppfis function ‘+’ not meaningful for factors

Issue - State: closed - Opened by dani-davenport about 5 years ago - 2 comments

#30 - Error because typo in fstat.from.adegenet.R header

Issue - State: closed - Opened by VitorAguiar over 5 years ago - 1 comment

#29 - Request to update hierfstat to CRAN

Issue - State: closed - Opened by zkamvar over 5 years ago - 7 comments

#28 - tests lead to g.star=0 on all permutations

Issue - State: closed - Opened by nehasavant over 5 years ago - 8 comments

#27 - boot.ppfst requires pop to be numeric

Issue - State: closed - Opened by greavess over 5 years ago - 5 comments

#26 - pairwise.neifst doesn't work if I use diploid=FALSE

Issue - State: closed - Opened by akang1414 almost 6 years ago - 8 comments

#25 - allelic.richness does not work for single-locus datasets

Issue - State: closed - Opened by nikostourvas over 6 years ago - 1 comment

#24 - Bug in `getal`

Issue - State: closed - Opened by alephreish over 6 years ago - 2 comments

#23 - Problem using hierfstat with genind object

Issue - State: closed - Opened by suzkel over 6 years ago - 3 comments

#22 - basic.stats :Error in sHo/2/n : non-conformable arrays

Issue - State: closed - Opened by xinghuq over 6 years ago - 4 comments

#21 - Problem while converting from genind to a hierfstat format

Issue - State: closed - Opened by frederic-michaud over 6 years ago - 4 comments
Labels: bug, invalid

#20 - inconsistent results: fstat vs fst.pairwise for two pops

Issue - State: closed - Opened by mutualism almost 7 years ago - 6 comments

#19 - Attempting for fix nested loop issue.

Pull Request - State: closed - Opened by nmoran over 7 years ago

#18 - boot.ppfst

Issue - State: closed - Opened by juance100 almost 8 years ago - 14 comments

#17 - pairwise.WCfst dim(X) must have a positive length

Issue - State: closed - Opened by pedrosenna about 8 years ago - 3 comments

#16 - varcomp.glob

Issue - State: closed - Opened by VincentDamotte over 8 years ago - 2 comments

#15 - modified genind2hierfstat to include conversion pathway for loci when…

Pull Request - State: closed - Opened by EricArcher over 8 years ago - 4 comments

#14 - Revert "modifications to genind2hierfstat"

Pull Request - State: closed - Opened by jgx65 over 8 years ago - 4 comments

#13 - modifications to genind2hierfstat

Pull Request - State: closed - Opened by EricArcher over 8 years ago - 3 comments

#12 - pop.freq returns vector for one locus rather than a table

Issue - State: closed - Opened by EricArcher over 8 years ago - 3 comments

#11 - allow data with subset of nucleotides to be processed

Pull Request - State: closed - Opened by zkamvar almost 9 years ago - 3 comments

#10 - genind2hierfstat fix

Pull Request - State: closed - Opened by zkamvar almost 9 years ago - 3 comments

#9 - check new function genind2hierfstat

Issue - State: closed - Opened by jgx65 almost 9 years ago - 4 comments

#8 - request to update hierfstat on CRAN

Issue - State: closed - Opened by zkamvar almost 9 years ago - 1 comment

#7 - basic.stats does not work with only a single locus

Issue - State: closed - Opened by mijter about 9 years ago - 1 comment

#6 - pairwise.fst

Issue - State: closed - Opened by juance100 about 9 years ago - 32 comments

#5 - Pass the check

Issue - State: closed - Opened by thibautjombart over 9 years ago - 2 comments
Labels: bug

#4 - create functions specific for SNPs for efficiency

Issue - State: closed - Opened by jgx65 over 9 years ago - 1 comment
Labels: enhancement

#3 - make use of genlight object (adegenet)

Issue - State: closed - Opened by jgx65 over 9 years ago - 4 comments
Labels: enhancement

#2 - write function for estimating weir&cockerham for 2 populations only

Issue - State: closed - Opened by jgx65 over 9 years ago - 4 comments
Labels: enhancement

#1 - Make a better use of genind object

Issue - State: closed - Opened by jgx65 over 9 years ago - 3 comments
Labels: enhancement