Ecosyste.ms: Issues

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GitHub / jfjlaros/demultiplex issues and pull requests

#34 - Demultiplex with i7 index on dual index FASTQ

Issue - State: closed - Opened by agos316 9 months ago - 2 comments
Labels: question

#31 - Does this tool works for Cell hashing data generated for cell ranger multi?

Issue - State: closed - Opened by bhuwankhatri11 12 months ago - 3 comments
Labels: question

#30 - Does demultiplex pick up where it left off?

Issue - State: closed - Opened by jzehnpfennig about 1 year ago - 1 comment
Labels: question

#29 - pairwise2.py doesn't work. Biopython deprecated it.

Issue - State: closed - Opened by Yyeserin over 1 year ago - 4 comments
Labels: bug

#28 - demultiplex unknown results

Issue - State: closed - Opened by seven1112233 almost 2 years ago - 4 comments
Labels: invalid

#27 - Is it possible for the barcode to contain non-ATCG characters?

Issue - State: closed - Opened by vivian9909 about 2 years ago - 1 comment
Labels: question

#26 - All reads go into unknown

Issue - State: closed - Opened by Phagee over 2 years ago - 4 comments
Labels: question

#25 - Does demultiplex support hamming distance?

Issue - State: closed - Opened by iquasere over 2 years ago - 1 comment
Labels: question

#24 - Degenerated constructs

Issue - State: closed - Opened by iquasere over 2 years ago - 5 comments
Labels: question

#23 - positions for barcodes do not work at all!

Issue - State: closed - Opened by antonkulaga about 3 years ago - 1 comment
Labels: invalid

#22 - demultiplexing illumina with forward and reverse tag

Issue - State: closed - Opened by iadamo1 about 3 years ago - 1 comment
Labels: question

#21 - Dual barcodes with match

Issue - State: closed - Opened by caonetto over 3 years ago - 3 comments
Labels: enhancement

#20 - Paired end support for match.

Issue - State: closed - Opened by Averstic over 3 years ago - 2 comments
Labels: enhancement

#19 - tags 5' and 3' in two different files usage

Issue - State: closed - Opened by iadamo1 over 3 years ago - 1 comment
Labels: question

#18 - Output

Issue - State: closed - Opened by Kevin-Brockers over 3 years ago - 12 comments
Labels: enhancement

#17 - dealing with conflicts

Issue - State: closed - Opened by callumparr over 3 years ago - 5 comments
Labels: question

#16 - demultiplex match outputs all input reads to each barcode

Issue - State: closed - Opened by callumparr over 3 years ago - 3 comments
Labels: question

#15 - Issue deleted

Issue - State: closed - Opened by Emily072020 almost 4 years ago

#14 - Cannot demultiplex based on barcode in header

Issue - State: closed - Opened by RominaAugustin about 4 years ago - 10 comments
Labels: question

#13 - Parallel processing with multiple cores

Issue - State: closed - Opened by lokeshbio about 4 years ago - 5 comments
Labels: enhancement

#12 - Working with compressed or piped files

Issue - State: closed - Opened by bulksoil about 4 years ago - 2 comments
Labels: enhancement

#11 - How does one set the mismatch, deletion settings?

Issue - State: closed - Opened by rgranit over 4 years ago - 4 comments
Labels: question

#10 - Is there an option to trim the barcode after the split?

Issue - State: closed - Opened by rgranit over 4 years ago - 2 comments
Labels: question

#9 - Where is the barcode ?

Issue - State: closed - Opened by dridk over 4 years ago - 1 comment
Labels: question

#8 - All reads go to UNKNOWN

Issue - State: closed - Opened by majogomezhughes over 4 years ago - 6 comments
Labels: question

#7 - demultiplex: error: invalid barcodes file format

Issue - State: closed - Opened by majogomezhughes over 4 years ago - 8 comments
Labels: question

#6 - All reads categorized as UNKNOWN

Issue - State: closed - Opened by wenweixiong over 4 years ago - 14 comments
Labels: enhancement

#5 - can't run demultiplex with SyntaxError

Issue - State: closed - Opened by AstreChen over 4 years ago - 1 comment
Labels: question

#4 - Demultiplexing not working?

Issue - State: closed - Opened by ViriatoII over 4 years ago - 4 comments
Labels: question

#3 - Biopython Warning

Issue - State: closed - Opened by nr0cinu over 5 years ago - 2 comments
Labels: bug

#2 - anaconda2 errors

Issue - State: closed - Opened by raw937 about 6 years ago - 2 comments
Labels: bug

#1 - dual indexes.

Issue - State: closed - Opened by raw937 about 6 years ago - 6 comments
Labels: question