jfallmann/MONSDA issues and pull requests

#62 - v1.2.8.1

Pull Request - State: closed - Opened by jfallmann 6 months ago

#61 - v1.2.8

Pull Request - State: closed - Opened by jfallmann 6 months ago

#60 - Hotfix qc2

Pull Request - State: closed - Opened by jfallmann 10 months ago

#59 - Hotfix qc

Pull Request - State: closed - Opened by jfallmann 10 months ago

#58 - Dev extraparams

Pull Request - State: closed - Opened by jfallmann 11 months ago

#57 - Snakemake fixes

Pull Request - State: closed - Opened by jfallmann 11 months ago

#56 - Snakemake version >8 breaks workflows

Issue - State: closed - Opened by jfallmann about 1 year ago - 1 comment
Labels: bug

#55 - Adding more options to configurator

Pull Request - State: closed - Opened by jfallmann about 1 year ago

#54 - Dev starsolo

Pull Request - State: closed - Opened by jfallmann about 1 year ago

#53 - Dev clean r

Pull Request - State: closed - Opened by jfallmann about 1 year ago

#52 - Dev cleanup

Pull Request - State: closed - Opened by jfallmann over 1 year ago

#51 - Nice work!

Issue - State: closed - Opened by iamh2o over 1 year ago - 1 comment

#50 - quickfix tab/space, configurator

Pull Request - State: closed - Opened by jfallmann over 1 year ago

#49 - Dev basecall

Pull Request - State: closed - Opened by jfallmann over 1 year ago

#48 - Version bumps, fixes and nextflow postprocessing

Pull Request - State: closed - Opened by jfallmann over 1 year ago

#47 - Nf cleanup

Pull Request - State: closed - Opened by jfallmann almost 2 years ago

#46 - Dev nf

Pull Request - State: closed - Opened by jfallmann almost 2 years ago

#45 - Dev nf

Pull Request - State: closed - Opened by jfallmann almost 2 years ago

#44 - REMAP Workflow

Issue - State: closed - Opened by jfallmann almost 2 years ago - 1 comment
Labels: enhancement

#43 - Dev nf

Pull Request - State: closed - Opened by jfallmann almost 2 years ago

#42 - Dev nf post

Pull Request - State: closed - Opened by jfallmann almost 2 years ago

#41 - Singe-cell workflows

Issue - State: closed - Opened by jfallmann over 2 years ago
Labels: enhancement

#40 - Nextflow postprocess

Issue - State: closed - Opened by jfallmann over 2 years ago - 1 comment
Labels: enhancement

#39 - Automatize versioning for configs

Issue - State: open - Opened by jfallmann over 2 years ago
Labels: enhancement

#38 - Parallellize runs across conditions/setups

Issue - State: open - Opened by jfallmann over 2 years ago
Labels: enhancement

#37 - Whoa

Issue - State: closed - Opened by iamh2o over 2 years ago - 1 comment

#36 - Dev configurator

Pull Request - State: closed - Opened by jfallmann almost 3 years ago

#35 - Dev merge

Pull Request - State: closed - Opened by jfallmann over 3 years ago

#34 - Dev version config

Pull Request - State: closed - Opened by jfallmann over 3 years ago

#33 - Configurator update

Pull Request - State: closed - Opened by meisterL over 3 years ago

#32 - Configurator update

Pull Request - State: closed - Opened by meisterL over 3 years ago

#31 - Add a Gitter chat badge to README.md

Pull Request - State: closed - Opened by gitter-badger almost 4 years ago

#30 - Nextflow

Pull Request - State: closed - Opened by jfallmann almost 4 years ago

#29 - Summary

Pull Request - State: closed - Opened by jfallmann almost 4 years ago

#28 - Summary

Pull Request - State: closed - Opened by jfallmann about 4 years ago

#27 - Settings

Pull Request - State: closed - Opened by jfallmann about 4 years ago

#26 - Settings

Pull Request - State: closed - Opened by jfallmann about 4 years ago
Labels: enhancement

#25 - Dev dtu merge

Pull Request - State: closed - Opened by jfallmann over 4 years ago

#24 - Arbitrary ICS depth

Issue - State: closed - Opened by jfallmann over 4 years ago

#23 - new new new exon fix

Pull Request - State: closed - Opened by jfallmann over 4 years ago

#22 - Exonfix

Pull Request - State: closed - Opened by jfallmann over 4 years ago

#21 - Dev peaks

Pull Request - State: closed - Opened by jfallmann almost 5 years ago

#20 - RAW

Issue - State: closed - Opened by jfallmann almost 5 years ago

#19 - DAS

Issue - State: closed - Opened by jfallmann almost 5 years ago

#18 - Unify DE/DEU

Issue - State: closed - Opened by jfallmann almost 5 years ago

#17 - Hotfix

Pull Request - State: closed - Opened by jfallmann almost 5 years ago

#16 - RTD template integration

Issue - State: closed - Opened by jfallmann almost 5 years ago - 1 comment

#15 - Dev configurator merge

Pull Request - State: closed - Opened by jfallmann almost 5 years ago

#14 - include edger DE

Pull Request - State: closed - Opened by meisterL almost 5 years ago

#13 - Dev dexseq

Pull Request - State: closed - Opened by jfallmann almost 5 years ago

#12 - Hotfix

Pull Request - State: closed - Opened by jfallmann almost 5 years ago

#11 - Preprocessing

Issue - State: closed - Opened by jfallmann almost 5 years ago - 1 comment
Labels: enhancement

#10 - Slurm config

Issue - State: closed - Opened by jfallmann almost 5 years ago - 1 comment
Labels: enhancement

#9 - QC standalone

Issue - State: closed - Opened by jfallmann almost 5 years ago - 1 comment
Labels: enhancement

#8 - Bisulfite mapping with segemehl

Pull Request - State: closed - Opened by jfallmann about 5 years ago

#7 - Config Creator

Issue - State: closed - Opened by jfallmann about 5 years ago - 1 comment
Labels: enhancement

#6 - DEU README

Issue - State: closed - Opened by jfallmann about 5 years ago
Labels: enhancement

#5 - check arguments earlier

Issue - State: closed - Opened by jfallmann about 5 years ago - 1 comment
Labels: enhancement

#4 - Dev dexseq, edger integration

Pull Request - State: closed - Opened by jfallmann about 5 years ago

#3 - Dev dexseq, fixes and updates

Pull Request - State: closed - Opened by jfallmann about 5 years ago

#2 - Fix rerun of minimap jobs

Pull Request - State: closed - Opened by jfallmann over 5 years ago

#1 - Merging Dev

Pull Request - State: closed - Opened by jfallmann over 5 years ago

GitHub / jfallmann/MONSDA issues and pull requests