jetbrains-research/span issues and pull requests

#44 - Estimate single signal / noise density for genome, chromosome independent

Issue - State: closed - Opened by olegs 7 months ago
Labels: enhancement

#43 - Ignore contigs when coverage distribution is different from genome-wise

Issue - State: open - Opened by olegs 8 months ago - 1 comment
Labels: enhancement

#42 - Drosophila chromosomes ignored

Issue - State: closed - Opened by AlePur 8 months ago - 3 comments

#41 - Cleanup cache files, when model is not saved explicitly

Issue - State: closed - Opened by olegs about 1 year ago - 1 comment

#40 - Use fake process cancelled in order not affect tests

Pull Request - State: closed - Opened by iromeo about 1 year ago

#39 - Update examples with latest version 1.1.5628

Issue - State: closed - Opened by olegs over 1 year ago

#38 - SPAN doesn't honor --threads setting

Issue - State: closed - Opened by olegs almost 2 years ago - 1 comment
Labels: bug

#37 - Will SPAN use paired-end BAM files?

Issue - State: closed - Opened by evangeloo over 2 years ago - 2 comments

#36 - Mixture

Pull Request - State: closed - Opened by olegs almost 3 years ago

#35 - Error during islands computation

Issue - State: closed - Opened by olegs almost 3 years ago
Labels: bug

#34 - Wrong correlation between pvalues

Issue - State: closed - Opened by olegs almost 3 years ago - 2 comments
Labels: bug

#33 - Build instructions

Issue - State: closed - Opened by maxim-h almost 3 years ago - 11 comments

#32 - Stoffer-Liptak test produces Nan

Issue - State: closed - Opened by olegs about 3 years ago
Labels: bug

#31 - Update SPAN Galaxy package

Issue - State: closed - Opened by olegs over 4 years ago - 1 comment
Labels: enhancement

#30 - Cleanup log file format

Issue - State: closed - Opened by olegs over 4 years ago - 1 comment
Labels: enhancement

#29 - Inconsistent LOG format in output

Issue - State: closed - Opened by olegs over 4 years ago
Labels: bug

#28 - Multi-sample labelling

Issue - State: closed - Opened by jessakay over 4 years ago - 2 comments

#27 - NPE

Issue - State: closed - Opened by olegs over 4 years ago - 1 comment
Labels: bug

#26 - Remove optional model with additional covariates from SPAN cli

Issue - State: closed - Opened by olegs almost 5 years ago - 3 comments
Labels: enhancement

#25 - Do not fail on unknown chromosomes in labels file

Issue - State: open - Opened by olegs almost 5 years ago
Labels: bug

#23 - how to cite span?

Issue - State: closed - Opened by clouds-drift about 5 years ago - 3 comments

#22 - Improving Span, or Span 2

Pull Request - State: closed - Opened by dievsky about 5 years ago - 6 comments

#21 - Upgrade to big 0.9.0

Pull Request - State: closed - Opened by dievsky over 5 years ago

#20 - bigwig is not supported as advertised?

Issue - State: closed - Opened by clouds-drift over 5 years ago - 3 comments

#19 - SPAN output is confusing during model tuning

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: enhancement

#18 - Model fit failed

Issue - State: closed - Opened by EllieDuan over 5 years ago - 6 comments

#17 - Fix different layout of long ints

Issue - State: closed - Opened by olegs over 5 years ago

#16 - Span peak scores

Pull Request - State: closed - Opened by dievsky over 5 years ago - 4 comments

#15 - Span doesn't calculate the peak value

Issue - State: closed - Opened by dievsky over 5 years ago - 3 comments
Labels: bug

#14 - Span issue 9

Pull Request - State: closed - Opened by dievsky over 5 years ago

#13 - Don't invoke SpanCLA.main in tests

Issue - State: closed - Opened by dievsky over 5 years ago
Labels: question

#12 - WARNING Unable to create a system terminal

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: bug

#11 - Improve SPAN model convergence prediction ETA

Issue - State: closed - Opened by olegs over 5 years ago
Labels: enhancement

#10 - "BIN is ignored" when it's not

Issue - State: closed - Opened by dievsky over 5 years ago
Labels: invalid

#9 - Allow Span CLA to call and tune peaks with just the model file present

Issue - State: closed - Opened by dievsky over 5 years ago - 7 comments
Labels: enhancement

#8 - SPAN ignores chromosome alternative contigs

Issue - State: closed - Opened by iromeo about 6 years ago - 3 comments

#7 - Span and Java heap space

Issue - State: closed - Opened by dievsky almost 6 years ago - 4 comments

#6 - Allow custom Span model names

Issue - State: closed - Opened by dievsky almost 6 years ago - 9 comments

#5 - Make Span file logging always set to DEBUG level

Issue - State: closed - Opened by dievsky almost 6 years ago - 2 comments

#4 - Publish SPAN to bioconda

Issue - State: open - Opened by olegs almost 6 years ago - 2 comments

#3 - Span custom model

Pull Request - State: closed - Opened by dievsky over 5 years ago - 1 comment

#2 - Invalid coverage caches: fail or recreate?

Issue - State: closed - Opened by dievsky over 5 years ago - 6 comments
Labels: question

#1 - Double hash in model name

Issue - State: closed - Opened by olegs over 5 years ago
Labels: bug

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