jetbrains-research/jbr issues and pull requests

#48 - Refactor PeaksAnnotatorTest and remove DesktopGenomeBrowser dependency

Issue - State: open - Opened by iromeo about 6 years ago - 1 comment

#47 - TrackView API cleanup

Issue - State: closed - Opened by iromeo about 6 years ago - 8 comments

#46 - Add summarised by location type tracks

Issue - State: open - Opened by iromeo over 7 years ago - 1 comment

#45 - Specialized ArithmeticTrackView for BedGraph files and the like

Issue - State: open - Opened by dievsky over 7 years ago - 5 comments

#44 - API for creating StatTrackView on bed files

Issue - State: open - Opened by iromeo over 7 years ago

#43 - Loaded BED should preserve order in multi location view mode

Issue - State: open - Opened by olegs over 6 years ago

#42 - Autosave peaks annotations and do not lose them (re-open) after browser or jvm crash / computer restart

Issue - State: open - Opened by iromeo over 6 years ago - 5 comments

#41 - File masks & Directories filters doesn't work properly in JRB launched using JB Runtime

Issue - State: closed - Opened by iromeo over 6 years ago - 4 comments

#40 - Socket timeout while opening Blueprint FTP links

Issue - State: open - Opened by iromeo over 6 years ago - 7 comments

#39 - It is strange and counterintuitive to see converting WIG to BigWig on loading simple WIG file.

Issue - State: open - Opened by olegs about 6 years ago - 8 comments

#38 - Bed files names loaded are not available in autocompletion as multiple locations models

Issue - State: open - Opened by iromeo over 6 years ago - 9 comments

#37 - Show bigBed files in autocompletion/Open as Multiple locations action

Issue - State: open - Opened by iromeo over 6 years ago - 2 comments

#36 - Improve multi location view header, add size/strand distribution, show number of visualized, sort by chromosome?

Issue - State: open - Opened by olegs over 7 years ago - 1 comment

#35 - High DPI display support [windows]

Issue - State: closed - Opened by iromeo over 6 years ago - 8 comments

#34 - Any chr name support

Issue - State: closed - Opened by iromeo over 6 years ago - 3 comments

#33 - Investigate JBR + 32bit jvm

Issue - State: closed - Opened by iromeo over 6 years ago - 5 comments

#32 - JBR track legend anti-aliasing issue (Linux)

Issue - State: closed - Opened by iromeo over 6 years ago - 1 comment

#31 - Rendering quirks in Overlap info for lots of files

Issue - State: closed - Opened by olegs almost 6 years ago - 4 comments

#30 - Multiple locations bounds syntax doesn't work for non tss/tes notations.

Issue - State: open - Opened by iromeo over 6 years ago

#29 - Choose score column for regions stats track view

Issue - State: open - Opened by iromeo about 6 years ago

#28 - JBR Errors notifier

Issue - State: open - Opened by iromeo about 6 years ago - 2 comments

#27 - Bed track opening is too slow when file is on a SSHFS disk

Issue - State: open - Opened by iromeo about 6 years ago - 3 comments

#26 - Session fails to load silently without any error message if some plugins are missing

Issue - State: closed - Opened by olegs about 6 years ago - 2 comments

#25 - MacOS: Ctrl+Space is default language switch shortcut

Issue - State: open - Opened by iromeo almost 6 years ago - 2 comments

#24 - Windows UI issues

Issue - State: open - Opened by iromeo almost 6 years ago - 3 comments

#23 - Browser sometimes doesn't allow to clear annotations item is grayed

Issue - State: open - Opened by iromeo almost 6 years ago

#22 - Lateinit problem during screenshot within JBR

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment

#22 - Lateinit problem during screenshot within JBR

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment

#21 - JBR overlap tooltip vanishes after a few seconds

Issue - State: closed - Opened by dievsky almost 6 years ago - 1 comment

#21 - JBR overlap tooltip vanishes after a few seconds

Issue - State: closed - Opened by dievsky almost 6 years ago - 1 comment

#20 - ERROR lateinit property

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment
Labels: bug

#20 - ERROR lateinit property

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment
Labels: bug

#19 - JBR fails to zoom out on a single nucleotide scale

Issue - State: closed - Opened by olegs over 5 years ago
Labels: bug

#19 - JBR fails to zoom out on a single nucleotide scale

Issue - State: closed - Opened by olegs over 5 years ago
Labels: bug

#18 - JBR on Linux has problems loading yams session

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment

#18 - JBR on Linux has problems loading yams session

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment

#17 - JBR web server mode - incorrect retina rendering

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: bug

#17 - JBR web server mode - incorrect retina rendering

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: bug

#16 - Make "all supported file types" a default selection when opening files

Issue - State: closed - Opened by dievsky over 5 years ago - 1 comment

#16 - Make "all supported file types" a default selection when opening files

Issue - State: closed - Opened by dievsky over 5 years ago - 1 comment

#15 - JBR Genome Browser - silently fails to open session file

Issue - State: closed - Opened by olegs almost 6 years ago - 6 comments
Labels: bug

#14 - JBR Linux distribution: cannot launch

Issue - State: closed - Opened by iromeo almost 6 years ago - 4 comments
Labels: bug, major

#13 - JBR Browser documentation

Issue - State: closed - Opened by iromeo over 6 years ago - 7 comments

#12 - Change "<" and ">" button semantics to scroll left/right

Issue - State: closed - Opened by iromeo almost 6 years ago - 2 comments

#11 - Set Scales Min/Max should have option to unset them explicitly

Issue - State: closed - Opened by olegs almost 6 years ago - 2 comments
Labels: enhancement

#10 - Annotation mode button is disabled in multiple locations mode.

Issue - State: open - Opened by iromeo almost 6 years ago

#9 - Support for vector screenshots

Issue - State: closed - Opened by assaron almost 6 years ago - 3 comments

#8 - Repeats aren't bundled as annotations

Issue - State: open - Opened by iromeo almost 6 years ago - 2 comments

#7 - Reads in BED.GZ format

Issue - State: open - Opened by iromeo almost 6 years ago

#6 - BAM files support

Issue - State: open - Opened by iromeo almost 6 years ago
Labels: enhancement

#5 - Check if new version is available and suggest updating JBR

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment

#4 - Number format exception while opening peaks overlap

Issue - State: open - Opened by iromeo almost 6 years ago - 5 comments
Labels: bug

GitHub / jetbrains-research/jbr issues and pull requests