jetbrains-research/jbr issues and pull requests

#100 - JBR fails to start in case of corrupted annotations.yaml file

Issue - State: closed - Opened by olegs over 4 years ago - 1 comment
Labels: bug

#100 - JBR fails to start in case of corrupted annotations.yaml file

Issue - State: closed - Opened by olegs over 4 years ago - 1 comment
Labels: bug

#99 - ENCODE search: filtering by file format and add group as tracks

Issue - State: closed - Opened by iromeo almost 5 years ago - 2 comments

#99 - ENCODE search: filtering by file format and add group as tracks

Issue - State: closed - Opened by iromeo almost 5 years ago - 2 comments

#98 - ENCODE search cannot find ChromHMM tracks

Issue - State: closed - Opened by iromeo almost 5 years ago - 31 comments
Labels: bug

#98 - ENCODE search cannot find ChromHMM tracks

Issue - State: closed - Opened by iromeo almost 5 years ago - 31 comments
Labels: bug

#97 - Please move "ENCODE" to "File" menu.

Issue - State: closed - Opened by iromeo almost 5 years ago - 1 comment
Labels: usability Issue

#97 - Please move "ENCODE" to "File" menu.

Issue - State: closed - Opened by iromeo almost 5 years ago - 1 comment
Labels: usability Issue

#96 - Show cell typel/hist modification information when search by ENCODE/GEO id

Issue - State: closed - Opened by iromeo almost 5 years ago - 8 comments
Labels: usability Issue

#96 - Show cell typel/hist modification information when search by ENCODE/GEO id

Issue - State: closed - Opened by iromeo almost 5 years ago - 8 comments
Labels: usability Issue

#95 - File entries with same names in ENCODE search results

Issue - State: closed - Opened by iromeo almost 5 years ago - 10 comments
Labels: usability Issue

#95 - File entries with same names in ENCODE search results

Issue - State: closed - Opened by iromeo almost 5 years ago - 10 comments
Labels: usability Issue

#94 - JBR doesn't compile on Oracle JDK 11

Issue - State: closed - Opened by dievsky almost 5 years ago - 2 comments
Labels: bug

#94 - JBR doesn't compile on Oracle JDK 11

Issue - State: closed - Opened by dievsky almost 5 years ago - 2 comments
Labels: bug

#93 - Frame size and position not saved at shutdown

Issue - State: closed - Opened by dievsky almost 5 years ago - 1 comment
Labels: bug

#93 - Frame size and position not saved at shutdown

Issue - State: closed - Opened by dievsky almost 5 years ago - 1 comment
Labels: bug

#92 - SearchEncodeUtil Exception during ENCODE search

Issue - State: closed - Opened by olegs almost 5 years ago - 5 comments
Labels: bug

#92 - SearchEncodeUtil Exception during ENCODE search

Issue - State: closed - Opened by olegs almost 5 years ago - 5 comments
Labels: bug

#91 - ENCODE project search

Issue - State: closed - Opened by olegs almost 5 years ago - 3 comments
Labels: enhancement

#91 - ENCODE project search

Issue - State: closed - Opened by olegs almost 5 years ago - 3 comments
Labels: enhancement

#90 - ENCODE project search: multiline text is not shown

Issue - State: closed - Opened by olegs almost 5 years ago - 11 comments
Labels: bug

#90 - ENCODE project search: multiline text is not shown

Issue - State: closed - Opened by olegs almost 5 years ago - 11 comments
Labels: bug

#89 - Fix scale of BigWig track

Issue - State: open - Opened by olegs almost 5 years ago - 2 comments
Labels: enhancement

#89 - Fix scale of BigWig track

Issue - State: open - Opened by olegs almost 5 years ago - 2 comments
Labels: enhancement

#88 - JBR doesn't restore BED track view height after reopening session

Issue - State: open - Opened by olegs almost 5 years ago
Labels: bug

#88 - JBR doesn't restore BED track view height after reopening session

Issue - State: open - Opened by olegs almost 5 years ago
Labels: bug

#87 - Reduce font size to fit track height automatically

Issue - State: open - Opened by olegs almost 5 years ago
Labels: enhancement

#87 - Reduce font size to fit track height automatically

Issue - State: open - Opened by olegs almost 5 years ago
Labels: enhancement

#86 - NPE in ENCODE search

Issue - State: closed - Opened by olegs almost 5 years ago - 5 comments
Labels: bug

#86 - NPE in ENCODE search

Issue - State: closed - Opened by olegs almost 5 years ago - 5 comments
Labels: bug

#85 - ENCODE project search HTTPS problems

Issue - State: closed - Opened by olegs almost 5 years ago - 2 comments
Labels: bug

#85 - ENCODE project search HTTPS problems

Issue - State: closed - Opened by olegs almost 5 years ago - 2 comments
Labels: bug

#84 - Find track by name

Issue - State: open - Opened by olegs almost 5 years ago
Labels: enhancement, usability Issue

#84 - Find track by name

Issue - State: open - Opened by olegs almost 5 years ago
Labels: enhancement, usability Issue

#83 - NPE

Issue - State: closed - Opened by olegs about 5 years ago
Labels: bug

#83 - NPE

Issue - State: closed - Opened by olegs about 5 years ago
Labels: bug

#82 - createLinuxDistr downloads MACOS java build

Issue - State: closed - Opened by olegs about 5 years ago - 1 comment

#82 - createLinuxDistr downloads MACOS java build

Issue - State: closed - Opened by olegs about 5 years ago - 1 comment

#81 - JBR fails to open files with non-ascii symbols in path

Issue - State: open - Opened by olegs about 5 years ago - 1 comment
Labels: bug

#81 - JBR fails to open files with non-ascii symbols in path

Issue - State: open - Opened by olegs about 5 years ago - 1 comment
Labels: bug

#80 - Track About Table column names not readable

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: usability Issue

#80 - Track About Table column names not readable

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: usability Issue

#79 - BED tracks don't get repainted of Region Label change.

Issue - State: closed - Opened by olegs over 5 years ago - 4 comments
Labels: bug

#78 - Support BED tracks filtering by <

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment
Labels: usability Issue

#78 - Support BED tracks filtering by <

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment
Labels: usability Issue

#77 - Export tuned BED files produce empty sized results

Issue - State: closed - Opened by olegs over 5 years ago
Labels: bug

#77 - Export tuned BED files produce empty sized results

Issue - State: closed - Opened by olegs over 5 years ago
Labels: bug

#76 - Support loading genomes from *.fa.gz files

Issue - State: open - Opened by iromeo over 5 years ago - 1 comment

#76 - Support loading genomes from *.fa.gz files

Issue - State: open - Opened by iromeo over 5 years ago - 1 comment

#75 - Show selected tracks number in toolbar

Issue - State: closed - Opened by iromeo over 5 years ago

#75 - Show selected tracks number in toolbar

Issue - State: closed - Opened by iromeo over 5 years ago

#74 - Session autosave

Issue - State: open - Opened by iromeo over 5 years ago

#74 - Session autosave

Issue - State: open - Opened by iromeo over 5 years ago

#73 - Cannot load BigWig tracks from DEEP project

Issue - State: open - Opened by iromeo over 5 years ago - 2 comments
Labels: 3rd party

#73 - Cannot load BigWig tracks from DEEP project

Issue - State: open - Opened by iromeo over 5 years ago - 2 comments
Labels: 3rd party

#72 - Support Amazon Coretto as Java Runtime for JBR

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments

#72 - Support Amazon Coretto as Java Runtime for JBR

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments

#71 - Move track should be consistent using mouse and keyboard

Issue - State: closed - Opened by olegs over 5 years ago
Labels: enhancement

#71 - Move track should be consistent using mouse and keyboard

Issue - State: closed - Opened by olegs over 5 years ago
Labels: enhancement

#70 - Refactor FilteredBedTrackView to avoid possible race-conditions

Issue - State: closed - Opened by iromeo over 5 years ago

#70 - Refactor FilteredBedTrackView to avoid possible race-conditions

Issue - State: closed - Opened by iromeo over 5 years ago

#69 - Score column switching sometimes leads to empty track

Issue - State: closed - Opened by dievsky over 5 years ago - 8 comments
Labels: bug

#69 - Score column switching sometimes leads to empty track

Issue - State: closed - Opened by dievsky over 5 years ago - 8 comments
Labels: bug

#68 - BED tracks with no item RGB field shouldn't have Region RGB colour mode

Issue - State: closed - Opened by dievsky over 5 years ago - 1 comment
Labels: bug

#68 - BED tracks with no item RGB field shouldn't have Region RGB colour mode

Issue - State: closed - Opened by dievsky over 5 years ago - 1 comment
Labels: bug

#67 - MACS2 broad peaks: ERROR Value out of range. Value:"42682" Radix:10

Issue - State: closed - Opened by iromeo about 6 years ago - 1 comment

#66 - Rendering missing and zero scores

Issue - State: closed - Opened by dievsky over 5 years ago - 2 comments
Labels: question

#66 - Rendering missing and zero scores

Issue - State: closed - Opened by dievsky over 5 years ago - 2 comments
Labels: question

#65 - Cannot load track

Issue - State: closed - Opened by DaryaChaplygina over 5 years ago - 5 comments
Labels: bug

#65 - Cannot load track

Issue - State: closed - Opened by DaryaChaplygina over 5 years ago - 5 comments
Labels: bug

#64 - JBR genome browser doesn't respond

Issue - State: closed - Opened by CarrollNew over 5 years ago - 2 comments

#64 - JBR genome browser doesn't respond

Issue - State: closed - Opened by CarrollNew over 5 years ago - 2 comments

#63 - JBR should show information about scales for BED tracks (probably in legend)

Issue - State: closed - Opened by olegs over 5 years ago - 8 comments
Labels: enhancement

#63 - JBR should show information about scales for BED tracks (probably in legend)

Issue - State: closed - Opened by olegs over 5 years ago - 8 comments
Labels: enhancement

#62 - JBR fails to load BED3 file with empty last line

Issue - State: closed - Opened by olegs over 5 years ago - 4 comments
Labels: bug

#62 - JBR fails to load BED3 file with empty last line

Issue - State: closed - Opened by olegs over 5 years ago - 4 comments
Labels: bug

#61 - BED6 format ignored while loading session with remote BED files

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: bug

#61 - BED6 format ignored while loading session with remote BED files

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: bug

#60 - CME in JBR while loading bunch of SPAN models

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: bug

#60 - CME in JBR while loading bunch of SPAN models

Issue - State: closed - Opened by olegs over 5 years ago - 2 comments
Labels: bug

#59 - Cannot reopen session with wig files

Issue - State: open - Opened by olegs over 5 years ago - 1 comment
Labels: bug

#59 - Cannot reopen session with wig files

Issue - State: open - Opened by olegs over 5 years ago - 1 comment
Labels: bug

#58 - About handler doesn't work in JB Runtime 11 (MacOS)

Issue - State: closed - Opened by iromeo over 5 years ago - 4 comments
Labels: usability Issue, 3rd party

#58 - About handler doesn't work in JB Runtime 11 (MacOS)

Issue - State: closed - Opened by iromeo over 5 years ago - 4 comments
Labels: usability Issue, 3rd party

#57 - JRE 9, JRE 11: Not supported

Issue - State: closed - Opened by iromeo over 5 years ago - 4 comments

#57 - JRE 9, JRE 11: Not supported

Issue - State: closed - Opened by iromeo over 5 years ago - 4 comments

#56 - Genes track view - gene names blinking

Issue - State: closed - Opened by olegs over 5 years ago - 8 comments
Labels: bug, usability Issue

#56 - Genes track view - gene names blinking

Issue - State: closed - Opened by olegs over 5 years ago - 8 comments
Labels: bug, usability Issue

#55 - Cytobands and track legends aligned differently

Issue - State: closed - Opened by iromeo over 5 years ago

#55 - Cytobands and track legends aligned differently

Issue - State: closed - Opened by iromeo over 5 years ago

#54 - Open session doesn't scale up track sizes in case of using big fonts

Issue - State: closed - Opened by olegs over 5 years ago - 4 comments
Labels: bug, enhancement

#54 - Open session doesn't scale up track sizes in case of using big fonts

Issue - State: closed - Opened by olegs over 5 years ago - 4 comments
Labels: bug, enhancement

#53 - JBR Cannot load "SICER + control" output files due to lack of file extension

Issue - State: closed - Opened by iromeo about 6 years ago - 5 comments

#52 - JBR - cannot open SICER results without any extension

Issue - State: closed - Opened by olegs over 5 years ago - 3 comments
Labels: bug, enhancement

#52 - JBR - cannot open SICER results without any extension

Issue - State: closed - Opened by olegs over 5 years ago - 3 comments
Labels: bug, enhancement

#51 - OOM error not shown during tracks preprocessing

Issue - State: open - Opened by olegs about 6 years ago - 6 comments

#50 - Easy share - start web server from JBR Genome Browser

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment
Labels: enhancement

#50 - Easy share - start web server from JBR Genome Browser

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment
Labels: enhancement

#49 - Do not hide annotation buttons if the window is narrow

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment

#49 - Do not hide annotation buttons if the window is narrow

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment

GitHub / jetbrains-research/jbr issues and pull requests