Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / jeromekelleher/sc2ts-paper issues and pull requests
#100 - Nicer layout for supplementary plots
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#100 - Nicer layout for supplementary plots
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#99 - First pass at a script to output stats used in the paper
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
- 3 comments
#99 - First pass at a script to output stats used in the paper
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
- 3 comments
#98 - Add the new SVG and PDF subgraph files
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#98 - Add the new SVG and PDF subgraph files
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#97 - figures/Pango_XA_XAG_XD_nxcld_tight_graph.pdf' not found
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#97 - figures/Pango_XA_XAG_XD_nxcld_tight_graph.pdf' not found
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#96 - Briefly define HMM consistency when we first say it
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#96 - Briefly define HMM consistency when we first say it
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#95 - Put XA, XAG, XD into a single plot
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#95 - Put XA, XAG, XD into a single plot
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#94 - Finalise pango imputation methods
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#94 - Finalise pango imputation methods
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#93 - Finish first pass
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#93 - Finish first pass
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#92 - Merge Fig 3B & Fig 3C
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 1 comment
#92 - Merge Fig 3B & Fig 3C
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 1 comment
#91 - More recombinants methods
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#91 - More recombinants methods
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#90 - recombinants stuff
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#90 - recombinants stuff
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#89 - Finalise recombination intervals figure & discuss
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#89 - Finalise recombination intervals figure & discuss
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#88 - Add recombination intervals first draft
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#88 - Add recombination intervals first draft
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#87 - Updates on parsimony algs
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#87 - Updates on parsimony algs
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#86 - Finish first pass on sample cluster trees
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#86 - Finish first pass on sample cluster trees
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#85 - Move methods
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#85 - Move methods
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#84 - Start at tree inference section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#84 - Start at tree inference section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#83 - Update LS section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#83 - Update LS section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#82 - Updates from Overleaf
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#82 - Updates from Overleaf
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#81 - Some extra tskit usage refs.
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#81 - Some extra tskit usage refs.
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#80 - Create Pango_XB_gisaid_large_graph.pdf
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#80 - Create Pango_XB_gisaid_large_graph.pdf
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#79 - Pango_XB_gisaid_large_graph.pdf missing
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#79 - Pango_XB_gisaid_large_graph.pdf missing
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#78 - Add list of tsk->ISL IDs
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#78 - Add list of tsk->ISL IDs
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#77 - Add the supplementary graphs
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#77 - Add the supplementary graphs
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#76 - Resolve some accidentally committed conflicts
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#76 - Resolve some accidentally committed conflicts
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#75 - Rm singleton recombs from plots
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#75 - Rm singleton recombs from plots
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#74 - Partial update of the LS section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#74 - Partial update of the LS section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#73 - Minor improvements in the single origin pango table
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#73 - Minor improvements in the single origin pango table
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#72 - Add more refs for tskit users
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#72 - Add more refs for tskit users
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#71 - Add ARG+tskit section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#71 - Add ARG+tskit section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#70 - Caption for imputation figure
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#70 - Caption for imputation figure
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#69 - Add figure for imputation
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#69 - Add figure for imputation
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#68 - Adding imputation figures
Pull Request -
State: closed - Opened by a-ignatieva over 1 year ago
- 1 comment
#68 - Adding imputation figures
Pull Request -
State: closed - Opened by a-ignatieva over 1 year ago
- 1 comment
#67 - Finalise mutation spectra figure
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 4 comments
#67 - Finalise mutation spectra figure
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 4 comments
#66 - Export data from mut spectra, add code
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#66 - Export data from mut spectra, add code
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#65 - Confirm time-traveller reduction method
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#65 - Confirm time-traveller reduction method
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#64 - Rejigger the Methods section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#64 - Rejigger the Methods section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#63 - Reshuffle methods
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#63 - Reshuffle methods
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#62 - Finalise "Data availability" statement
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#62 - Finalise "Data availability" statement
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#61 - Update initial Results section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#61 - Update initial Results section
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#60 - Update data in Table 1.
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#60 - Update data in Table 1.
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#59 - Wide vs long ARG graphs: XC plots
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 1 comment
#59 - Wide vs long ARG graphs: XC plots
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 1 comment
#58 - Complex Pango figure (XB)
Issue -
State: closed - Opened by hyanwong over 1 year ago
#58 - Complex Pango figure (XB)
Issue -
State: closed - Opened by hyanwong over 1 year ago
#57 - Removing singleton samples below re nodes
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 7 comments
#56 - Wide vs long ARG pango recombinants
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 3 comments
#56 - Wide vs long ARG pango recombinants
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 3 comments
#55 - Choose example of multiple-origin Pango recombinant lineage
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 10 comments
#55 - Choose example of multiple-origin Pango recombinant lineage
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 10 comments
#54 - Update on pango recombinants
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#54 - Update on pango recombinants
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#53 - Add captions for the MRCA plots
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#53 - Add captions for the MRCA plots
Pull Request -
State: closed - Opened by hyanwong over 1 year ago
#52 - Single origin details
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#52 - Single origin details
Pull Request -
State: closed - Opened by jeromekelleher over 1 year ago
#51 - Table summarising all pango recombinants
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#51 - Table summarising all pango recombinants
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
#50 - Figure for imputation example missing
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 3 comments