Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / jeromekelleher/phylokit issues and pull requests
#44 - CI Failure on `macos-latest`
Issue -
State: closed - Opened by Billyzhang1229 5 months ago
#43 - Update github workflow with setup-python@v5
Pull Request -
State: closed - Opened by Billyzhang1229 5 months ago
- 3 comments
#42 - Add Unit Tests for utility functions
Issue -
State: open - Opened by Billyzhang1229 5 months ago
#41 - Likelihood Calculation Felsenstein
Pull Request -
State: closed - Opened by Billyzhang1229 5 months ago
- 3 comments
#40 - Fix CI and update dependencies
Pull Request -
State: closed - Opened by Billyzhang1229 6 months ago
- 1 comment
#39 - Add save and open dataset functions
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
#38 - Add functions to save and open dataset
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 2 comments
#37 - Add save_dataset/load_dataset to support on-disk Zarr storage
Issue -
State: open - Opened by jeromekelleher about 2 years ago
#36 - Fix permute tree tests
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#35 - Parallel parsimony score calculation
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#34 - Add get_node_time function
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 2 comments
#33 - Update the xarray dataset dimensions' name
Issue -
State: closed - Opened by Billyzhang1229 about 2 years ago
#32 - Fix permute_tree from ds.samples to ds.sample_node
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 3 comments
#31 - Add new feature for visualizing trees
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#30 - Add function to permute tree with specific ordering
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#29 - Add tree visualize function
Issue -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 4 comments
#28 - Add permute function
Issue -
State: open - Opened by jeromekelleher about 2 years ago
#27 - Add parsimony_score function
Issue -
State: open - Opened by jeromekelleher about 2 years ago
#26 - Update linkage_matrix_to_dataset() with a jitted function
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#25 - Update _get_node_partition() using numba and numpy arrays
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 5 comments
#24 - Move numba_njit function to jit.py
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#23 - Simpler implementation of the Preorder Traversal
Issue -
State: closed - Opened by Billyzhang1229 about 2 years ago
#22 - Circular import when import other module in core.py
Issue -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#21 - Add rf_distance function with tests for distance metrics
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 2 comments
#20 - Add evaluation notebooks for distance metrics and balance metrics
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#19 - Update current work with the new xarray dataset interface
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 4 comments
#18 - Add preorder and postorder functions
Issue -
State: open - Opened by jeromekelleher about 2 years ago
- 3 comments
#17 - Add MRCA calculation based on Schieber-Vishkin algorithm
Issue -
State: open - Opened by jeromekelleher about 2 years ago
- 1 comment
#16 - RF distance
Issue -
State: open - Opened by jeromekelleher about 2 years ago
- 1 comment
#15 - Add mrca, branch_length and kc_distance functions with tests
Pull Request -
State: closed - Opened by Billyzhang1229 about 2 years ago
- 1 comment
#14 - Update existing functions to use dataset interface
Issue -
State: closed - Opened by jeromekelleher about 2 years ago
- 1 comment
#13 - Added initial dataset and UPGMA inference
Pull Request -
State: closed - Opened by jeromekelleher about 2 years ago
- 3 comments
#12 - No-jit coverage
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
- 2 comments
#11 - Provide some way for numba to be disabled - coverage
Issue -
State: closed - Opened by benjeffery over 2 years ago
- 3 comments
#10 - Test PR for coverage checks
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
- 3 comments
#9 - Coverage
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
- 2 comments
#8 - Add mrca, branch_length and kc_distance functions with tests
Pull Request -
State: closed - Opened by Billyzhang1229 over 2 years ago
- 8 comments
#7 - Initial CI
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
- 3 comments
#6 - Add pre-commit config
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
#5 - Add b2_index() and tests for tree balance
Pull Request -
State: closed - Opened by Billyzhang1229 over 2 years ago
- 2 comments
#4 - Initial draft of design document
Pull Request -
State: closed - Opened by jeromekelleher over 2 years ago
- 4 comments
#3 - Add colless_index and b1_index for tree balance
Pull Request -
State: closed - Opened by Billyzhang1229 over 2 years ago
- 1 comment
#2 - Add CI
Issue -
State: closed - Opened by jeromekelleher over 2 years ago
#1 - Add ROADMAP.md
Issue -
State: open - Opened by jeromekelleher over 2 years ago
- 1 comment