Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jeffdaily/parasail issues and pull requests

#100 - MAPQ should be 0 for unmapped reads

Issue - State: closed - Opened by palakpsheth over 1 year ago - 4 comments

#100 - MAPQ should be 0 for unmapped reads

Issue - State: closed - Opened by palakpsheth over 1 year ago - 4 comments

#99 - segfaults when using (some) profile functions

Issue - State: closed - Opened by brendanf over 1 year ago - 9 comments

#99 - segfaults when using (some) profile functions

Issue - State: closed - Opened by brendanf over 1 year ago - 9 comments

#98 - Out-of-bounds memory corruption

Issue - State: closed - Opened by stupendousMan almost 2 years ago

#98 - Out-of-bounds memory corruption

Issue - State: closed - Opened by stupendousMan almost 2 years ago

#97 - semi-global `parasail_sg_dx` not reporting `beg_ref` correctly

Issue - State: open - Opened by nh13 almost 2 years ago

#97 - semi-global `parasail_sg_dx` not reporting `beg_ref` correctly

Issue - State: open - Opened by nh13 almost 2 years ago

#96 - -t 24 not working threading

Issue - State: open - Opened by jianshu93 about 2 years ago - 21 comments

#96 - -t 24 not working threading

Issue - State: open - Opened by jianshu93 about 2 years ago - 21 comments

#95 - sg_qe_de – alignment extension?

Issue - State: closed - Opened by h-2 over 2 years ago - 3 comments

#95 - sg_qe_de – alignment extension?

Issue - State: closed - Opened by h-2 over 2 years ago - 3 comments

#94 - Fix compiler/linker support of SIMD instructions with -Wall

Pull Request - State: closed - Opened by emollier over 2 years ago

#94 - Fix compiler/linker support of SIMD instructions with -Wall

Pull Request - State: closed - Opened by emollier over 2 years ago

#93 - Kind of CIGAR

Issue - State: open - Opened by c0ntradicti0n almost 3 years ago - 2 comments

#93 - Kind of CIGAR

Issue - State: open - Opened by c0ntradicti0n almost 3 years ago - 2 comments

#92 - Make configuring OpenMP optional

Pull Request - State: closed - Opened by jvkersch almost 3 years ago - 2 comments

#92 - Make configuring OpenMP optional

Pull Request - State: closed - Opened by jvkersch almost 3 years ago - 2 comments

#91 - Failure linking against OpenMP on macOS

Issue - State: open - Opened by jvkersch almost 3 years ago

#91 - Failure linking against OpenMP on macOS

Issue - State: open - Opened by jvkersch almost 3 years ago

#90 - Cross-compiling for arm64 on macOS (x86_64 host)

Issue - State: closed - Opened by rainbowgoblin almost 3 years ago - 4 comments

#90 - Cross-compiling for arm64 on macOS (x86_64 host)

Issue - State: closed - Opened by rainbowgoblin almost 3 years ago - 4 comments

#89 - Parasail install failing on M1 Pro

Issue - State: open - Opened by leecbaker about 3 years ago - 4 comments

#89 - Parasail install failing on M1 Pro

Issue - State: open - Opened by leecbaker about 3 years ago - 4 comments

#88 - CIGAR in Banded Global Alignment

Issue - State: open - Opened by zulal-b about 3 years ago

#88 - CIGAR in Banded Global Alignment

Issue - State: open - Opened by zulal-b about 3 years ago

#87 - configuration error on ubuntu

Issue - State: closed - Opened by kristin-watchmaker over 3 years ago - 4 comments

#87 - configuration error on ubuntu

Issue - State: closed - Opened by kristin-watchmaker over 3 years ago - 4 comments

#86 - parasail_aligner: NW - output all best alignments

Issue - State: open - Opened by psheth-twist over 3 years ago - 2 comments

#86 - parasail_aligner: NW - output all best alignments

Issue - State: open - Opened by psheth-twist over 3 years ago - 2 comments

#85 - Parasail on recent M1 Mac?

Issue - State: open - Opened by pb-cdunn over 3 years ago - 3 comments

#85 - Parasail on recent M1 Mac?

Issue - State: open - Opened by pb-cdunn over 3 years ago - 3 comments

#84 - Attempt to to align an empty string appears to cause a Floating point exception

Issue - State: open - Opened by rsharris almost 4 years ago - 6 comments

#84 - Attempt to to align an empty string appears to cause a Floating point exception

Issue - State: open - Opened by rsharris almost 4 years ago - 6 comments

#83 - install parasail on Mac

Issue - State: open - Opened by sunway1999 almost 4 years ago - 1 comment

#83 - install parasail on Mac

Issue - State: open - Opened by sunway1999 almost 4 years ago - 1 comment

#82 - SIMDe v0.7.6 upgrade

Pull Request - State: open - Opened by mr-c almost 4 years ago - 10 comments

#82 - SIMDe v0.7.6 upgrade

Pull Request - State: open - Opened by mr-c almost 4 years ago - 10 comments

#81 - Failed to build parasail on Mac OSx

Issue - State: closed - Opened by ksahlin almost 4 years ago - 3 comments

#81 - Failed to build parasail on Mac OSx

Issue - State: closed - Opened by ksahlin almost 4 years ago - 3 comments

#80 - detection of AVX512

Issue - State: open - Opened by changchengx over 4 years ago - 1 comment

#80 - detection of AVX512

Issue - State: open - Opened by changchengx over 4 years ago - 1 comment

#79 - Different gap penalty for template and query

Issue - State: open - Opened by Nil-Fernandez-Lojo over 4 years ago - 1 comment

#79 - Different gap penalty for template and query

Issue - State: open - Opened by Nil-Fernandez-Lojo over 4 years ago - 1 comment

#78 - Fix spellings

Pull Request - State: closed - Opened by nileshpatra over 4 years ago - 2 comments

#78 - Fix spellings

Pull Request - State: closed - Opened by nileshpatra over 4 years ago - 2 comments

#77 - Fix tarball

Pull Request - State: closed - Opened by SoapZA over 4 years ago - 12 comments

#77 - Fix tarball

Pull Request - State: closed - Opened by SoapZA over 4 years ago - 12 comments

#76 - Assertion error

Issue - State: closed - Opened by cnk113 over 4 years ago - 2 comments

#76 - Assertion error

Issue - State: closed - Opened by cnk113 over 4 years ago - 2 comments

#75 - run time of app not scaling linearly with input file length

Issue - State: open - Opened by christakahashi almost 5 years ago - 5 comments

#75 - run time of app not scaling linearly with input file length

Issue - State: open - Opened by christakahashi almost 5 years ago - 5 comments

#74 - Definition of 'alignment score'

Issue - State: closed - Opened by jvivian-atreca about 5 years ago - 2 comments

#74 - Definition of 'alignment score'

Issue - State: closed - Opened by jvivian-atreca about 5 years ago - 2 comments

#73 - Parasail-2.4 is slower

Issue - State: open - Opened by nahmedraja about 5 years ago - 2 comments

#73 - Parasail-2.4 is slower

Issue - State: open - Opened by nahmedraja about 5 years ago - 2 comments

#72 - License clarification

Issue - State: open - Opened by rekado over 5 years ago - 1 comment

#72 - License clarification

Issue - State: open - Opened by rekado over 5 years ago - 1 comment

#71 - API request: return NULL from parasail_sequences_from_file upon error?

Issue - State: closed - Opened by jvkersch over 5 years ago - 4 comments

#71 - API request: return NULL from parasail_sequences_from_file upon error?

Issue - State: closed - Opened by jvkersch over 5 years ago - 4 comments

#70 - ld

Issue - State: closed - Opened by traversc over 5 years ago

#70 - ld

Issue - State: closed - Opened by traversc over 5 years ago

#68 - MSP

Issue - State: open - Opened by rmhubley over 5 years ago - 1 comment

#68 - MSP

Issue - State: open - Opened by rmhubley over 5 years ago - 1 comment

#67 - Bug in CIGAR Construction

Issue - State: closed - Opened by nlfortier over 5 years ago - 1 comment

#67 - Bug in CIGAR Construction

Issue - State: closed - Opened by nlfortier over 5 years ago - 1 comment

#66 - Feature request: convex gap penalty

Issue - State: open - Opened by ksahlin almost 6 years ago - 3 comments

#66 - Feature request: convex gap penalty

Issue - State: open - Opened by ksahlin almost 6 years ago - 3 comments

#65 - support for alphabets with more than 256 symbols

Issue - State: open - Opened by hernot almost 6 years ago - 6 comments
Labels: enhancement

#65 - support for alphabets with more than 256 symbols

Issue - State: open - Opened by hernot almost 6 years ago - 6 comments
Labels: enhancement

#64 - Question about gap open penalty for different vectorizations.

Issue - State: closed - Opened by jvkersch almost 6 years ago - 8 comments
Labels: question, wontfix

#64 - Question about gap open penalty for different vectorizations.

Issue - State: closed - Opened by jvkersch almost 6 years ago - 8 comments
Labels: question, wontfix

#63 - CMake on MacOS; OSError: dlopen(libparasail.dylib, 6): image not found

Issue - State: closed - Opened by callumparr about 6 years ago - 5 comments

#63 - CMake on MacOS; OSError: dlopen(libparasail.dylib, 6): image not found

Issue - State: closed - Opened by callumparr about 6 years ago - 5 comments

#62 - support msys, mingw

Issue - State: closed - Opened by jeffdaily about 6 years ago - 1 comment
Labels: bug, enhancement

#62 - support msys, mingw

Issue - State: closed - Opened by jeffdaily about 6 years ago - 1 comment
Labels: bug, enhancement

#61 - Querying version of installed parasail?

Issue - State: closed - Opened by HenrikBengtsson about 6 years ago - 8 comments
Labels: enhancement

#61 - Querying version of installed parasail?

Issue - State: closed - Opened by HenrikBengtsson about 6 years ago - 8 comments
Labels: enhancement

#60 - Question: API for getting aligned sequences, number of indels?

Issue - State: closed - Opened by jvkersch over 6 years ago - 7 comments

#60 - Question: API for getting aligned sequences, number of indels?

Issue - State: closed - Opened by jvkersch over 6 years ago - 7 comments

#59 - Support for ARM64?

Issue - State: closed - Opened by philres over 6 years ago - 19 comments

#59 - Support for ARM64?

Issue - State: closed - Opened by philres over 6 years ago - 19 comments

#58 - T and U are treated as mismatching nucleotides.

Issue - State: closed - Opened by Elmohound over 6 years ago - 5 comments

#57 - matches between uppercase and lowercase symbols are treated as mismatches

Issue - State: closed - Opened by Elmohound over 6 years ago - 6 comments

#57 - matches between uppercase and lowercase symbols are treated as mismatches

Issue - State: closed - Opened by Elmohound over 6 years ago - 6 comments

#56 - Fix automagic detection of intrinsics

Pull Request - State: closed - Opened by SoapZA over 6 years ago - 9 comments

#56 - Fix automagic detection of intrinsics

Pull Request - State: closed - Opened by SoapZA over 6 years ago - 9 comments

#54 - Question: does "sat" function cause the solution width to go higher than 16?

Issue - State: closed - Opened by Elmohound over 6 years ago - 1 comment

#54 - Question: does "sat" function cause the solution width to go higher than 16?

Issue - State: closed - Opened by Elmohound over 6 years ago - 1 comment

#52 - Traceback output does not get sent to file specified as argument to -g option

Issue - State: closed - Opened by Elmohound over 6 years ago - 3 comments

#51 - readme.md erroneously refers to "sse4" rather than "sse41"

Issue - State: closed - Opened by Elmohound over 6 years ago

#51 - readme.md erroneously refers to "sse4" rather than "sse41"

Issue - State: closed - Opened by Elmohound over 6 years ago

#50 - test_isa informs me that avx2 is not available, but it should be

Issue - State: closed - Opened by Elmohound almost 7 years ago - 9 comments

#50 - test_isa informs me that avx2 is not available, but it should be

Issue - State: closed - Opened by Elmohound almost 7 years ago - 9 comments