Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jbloomlab/polyclonal issues and pull requests

#87 - ensure epitope names are str, not int

Pull Request - State: closed - Opened by jbloom almost 3 years ago

#86 - Fixes barplot scale to [0,1]

Pull Request - State: closed - Opened by timcyu almost 3 years ago

#85 - fix max in distinct epitopes `altair` plots

Issue - State: closed - Opened by jbloom almost 3 years ago - 1 comment

#84 - Shrink `specify_epitopes` and `partition_function` notebooks

Pull Request - State: closed - Opened by timcyu almost 3 years ago

#83 - adjust regularization

Pull Request - State: closed - Opened by jbloom almost 3 years ago

#82 - adjust regularization weights

Issue - State: closed - Opened by jbloom almost 3 years ago

#81 - add real monoclonal antibody from REGN10933 deep mutational scanning

Pull Request - State: closed - Opened by jbloom almost 3 years ago

#80 - add real example

Issue - State: closed - Opened by jbloom almost 3 years ago

#79 - shrink overly large notebooks

Issue - State: closed - Opened by jbloom almost 3 years ago

#78 - update plots and `altair`

Pull Request - State: closed - Opened by jbloom almost 3 years ago - 1 comment

#77 - improve calculation of site summary escape

Pull Request - State: closed - Opened by jbloom almost 3 years ago

#76 - remove median from bootstrap results

Pull Request - State: closed - Opened by jbloom almost 3 years ago

#75 - improve site-level metrics and filtering of poorly fit mutations

Issue - State: closed - Opened by jbloom almost 3 years ago

#74 - allow filtering by times mutation seen

Pull Request - State: closed - Opened by jbloom almost 3 years ago

#73 - report number of variants with mutation

Issue - State: closed - Opened by jbloom almost 3 years ago

#72 - Highlight mutations with high uncertainty in heat maps

Issue - State: closed - Opened by zorian15 almost 3 years ago - 5 comments

#69 - 60 bootstrap predictions

Pull Request - State: closed - Opened by zorian15 almost 3 years ago - 1 comment

#46 - 44 interaction effects

Pull Request - State: closed - Opened by timcyu almost 3 years ago - 1 comment

#44 - Explore consequences of interaction effects between mutations

Issue - State: closed - Opened by timcyu almost 3 years ago - 2 comments

#41 - use `mushi.optimization` module (newly-available in python >3.7)

Pull Request - State: closed - Opened by WSDeWitt about 3 years ago - 1 comment

#32 - Use JAX for automatic differentiation

Pull Request - State: closed - Opened by matsen about 3 years ago - 2 comments

#31 - Use JAX for automatic differentiation

Issue - State: closed - Opened by matsen about 3 years ago - 9 comments

#24 - regularizing 3D spread of epitopes

Issue - State: closed - Opened by jbloom about 3 years ago - 32 comments

#18 - group lasso per site?

Issue - State: closed - Opened by jbloom about 3 years ago - 15 comments