jasonkyuyim/se3_diffusion issues and pull requests

#43 - J.1. Training details

Issue - State: closed - Opened by LivC93 20 days ago - 5 comments

#43 - J.1. Training details

Issue - State: closed - Opened by LivC93 20 days ago - 5 comments

#42 - Reproduce final results

Issue - State: open - Opened by ZichongWang 22 days ago - 1 comment

#42 - Reproduce final results

Issue - State: open - Opened by ZichongWang 22 days ago - 1 comment

#41 - Some questions about dataprocessing code for multimer

Issue - State: closed - Opened by sirius777coder 29 days ago - 2 comments

#41 - Some questions about dataprocessing code for multimer

Issue - State: closed - Opened by sirius777coder 29 days ago - 2 comments

#40 - Question on RMSD Calculation

Issue - State: open - Opened by Immortals-33 about 1 month ago - 4 comments

#40 - Question on RMSD Calculation

Issue - State: open - Opened by Immortals-33 about 1 month ago - 4 comments

#39 - A question on SO(3) equivariance

Issue - State: open - Opened by wzm2256 6 months ago

#39 - A question on SO(3) equivariance

Issue - State: open - Opened by wzm2256 6 months ago

#38 - trans_x0_threshold=1.0 ？

Issue - State: open - Opened by jiaweiguan 8 months ago - 13 comments

#38 - trans_x0_threshold=1.0 ？

Issue - State: open - Opened by jiaweiguan 8 months ago - 13 comments

#37 - math in SE(3) diffusion model

Issue - State: open - Opened by knightzzz9w 8 months ago - 1 comment

#37 - math in SE(3) diffusion model

Issue - State: open - Opened by knightzzz9w 8 months ago - 1 comment

#36 - One Question about Validation (Intermittent evaluation)

Issue - State: closed - Opened by cnexah 8 months ago - 2 comments

#36 - One Question about Validation (Intermittent evaluation)

Issue - State: closed - Opened by cnexah 8 months ago - 2 comments

#35 - Evaluating diversity of structures

Issue - State: closed - Opened by Guo-Stone 9 months ago - 2 comments

#35 - Evaluating diversity of structures

Issue - State: closed - Opened by Guo-Stone 9 months ago - 2 comments

#34 - Small issue about warm start in training code

Issue - State: closed - Opened by Immortals-33 about 1 year ago - 1 comment

#34 - Small issue about warm start in training code

Issue - State: closed - Opened by Immortals-33 about 1 year ago - 1 comment

#33 - A theoretical problem about protein structure DDPM and SE(3) invariant model

Issue - State: closed - Opened by Guo-Stone about 1 year ago - 4 comments

#33 - A theoretical problem about protein structure DDPM and SE(3) invariant model

Issue - State: closed - Opened by Guo-Stone about 1 year ago - 4 comments

#32 - Question about Table 1 FrameDiff sample metrics

Issue - State: closed - Opened by RinGhalSun about 1 year ago - 5 comments

#31 - issue about amp and rigid transform

Issue - State: closed - Opened by WeianMao over 1 year ago - 1 comment

#30 - Issue with FileNotFoundError for sample_1.fa during inference

Issue - State: closed - Opened by RinGhalSun over 1 year ago - 2 comments

#29 - about sample in training dataset

Issue - State: closed - Opened by WeianMao over 1 year ago - 1 comment

#28 - How to generate dynamic images in the demo?

Issue - State: closed - Opened by wewewexiao2008 over 1 year ago - 4 comments

#27 - self condition question

Issue - State: closed - Opened by Wangchentong over 1 year ago - 3 comments

#26 - Fix len() of the `TrainSampler` class

Pull Request - State: closed - Opened by amorehead over 1 year ago

#25 - Does `DistributedTrainSampler` also need to be updated for `cluster` support?

Issue - State: closed - Opened by amorehead over 1 year ago - 2 comments

#24 - Superposing generated structures

Issue - State: closed - Opened by amorehead over 1 year ago - 4 comments
Labels: question

#23 - Unexpected NaN Error Encountered When Training with NVIDIA GeForce RTX 4090 GPU

Issue - State: closed - Opened by Z-MU-Z over 1 year ago - 6 comments

#22 - Reproduction SE3 Diffusion on CATH40

Issue - State: closed - Opened by pengzhangzhi over 1 year ago - 7 comments

#21 - Clarification on auxiliary loss weight

Issue - State: closed - Opened by amorehead over 1 year ago - 1 comment

#20 - guidance function fails

Issue - State: closed - Opened by pengzhangzhi over 1 year ago - 3 comments

#19 - Setting baynex

Pull Request - State: closed - Opened by PerfectMartini over 1 year ago - 1 comment

#18 - About rotation loss dynamics

Issue - State: closed - Opened by amorehead over 1 year ago - 10 comments

#17 - add DDP support,main change:1.add get_ddp_info() in Experiment class.…

Pull Request - State: closed - Opened by Wangchentong over 1 year ago - 2 comments

#16 - question about dataset filtering

Issue - State: closed - Opened by Wangchentong over 1 year ago - 6 comments

#15 - PDB Data Preprocess scripts

Pull Request - State: closed - Opened by pengzhangzhi over 1 year ago - 2 comments

#14 - Unused PyTorch modules

Issue - State: closed - Opened by amorehead over 1 year ago - 1 comment

#13 - Small runtime improvement

Issue - State: closed - Opened by amorehead over 1 year ago - 1 comment

#12 - Question regarding `pad_rigid`

Issue - State: closed - Opened by amorehead over 1 year ago - 1 comment

#11 - Small question about padding function

Issue - State: closed - Opened by amorehead over 1 year ago - 1 comment

#10 - Small question about chain index shuffling

Issue - State: closed - Opened by amorehead over 1 year ago - 1 comment

#9 - Some questions about IGSO3 and score function.

Issue - State: closed - Opened by longlongman over 1 year ago - 10 comments

#8 - About time embedding algorithm algorithm

Issue - State: closed - Opened by sirius777coder over 1 year ago - 4 comments

#7 - some queries about the SO3_diffusion_example.ipynb notebook

Issue - State: closed - Opened by sirius777coder over 1 year ago - 2 comments

#6 - License

Issue - State: closed - Opened by ShintaroMinami over 1 year ago - 1 comment

#5 - About algorithm 2 TimestepBatch

Issue - State: closed - Opened by jiaweiguan almost 2 years ago - 9 comments
Labels: question

#4 - errors in processing mmcif file

Issue - State: closed - Opened by pengzhangzhi almost 2 years ago - 8 comments
Labels: bug

#3 - what tool you use to visualize the diffusion process?

Issue - State: closed - Opened by pengzhangzhi almost 2 years ago - 1 comment

#2 - is it possible to provide an example for inpainting?

Issue - State: closed - Opened by bzhousd almost 2 years ago - 6 comments
Labels: enhancement

#1 - updated all code to use rotation matrices not vectors

Pull Request - State: closed - Opened by blt2114 almost 2 years ago

GitHub / jasonkyuyim/se3_diffusion issues and pull requests