jason-weirather/AlignQC issues and pull requests

#26 - problem with the installation via Conda

Issue - State: open - Opened by shaghayeghsoudi almost 2 years ago - 1 comment

#25 - Expected lines to be ordered but they appear not to be ordered

Issue - State: open - Opened by shaniAmare over 4 years ago - 1 comment

#24 - Hi @rojinsafavi Sorry for the delay. I'm a busy these days so if lose track of these I appreciate getting the reminder :) It looks like a problem streaming the data. Is your alignment file sorted by genomic position? If they are ... I have a second more complicated problem that this may be due to. If they are supported by position, do you know if the index of your chromosomes are in alphabetical order? I notice that different aligners have different behaviors when it comes to sorting and sometimes they sort chromosomes alphabetically ... sometimes they do other things. And i may be making the alphabetical assumption in the ordering-check. Something you can try is my sort tool thats in seqtools

Issue - State: closed - Opened by shaniAmare over 4 years ago

#23 - ValueError: Expected lines to be ordered but they appear not to be ordered on line 49447

Issue - State: open - Opened by Huangyizhong over 5 years ago - 1 comment

#22 - Memory Requirements

Issue - State: closed - Opened by martynakgajos over 5 years ago - 4 comments

#21 - IOError: Not a gzipped file

Issue - State: closed - Opened by SziKayLeung about 6 years ago - 6 comments

#20 - transcript read count from alignQC

Issue - State: open - Opened by weihongqi over 6 years ago

#19 - Short reads analysis

Issue - State: closed - Opened by sivico26 over 6 years ago - 1 comment

#18 - input bam

Issue - State: open - Opened by paprikachan over 6 years ago

#17 - Error X11 module cannot be loaded

Issue - State: open - Opened by Nifaste over 6 years ago

#16 - `bioconda` package

Issue - State: open - Opened by PertuyF over 6 years ago - 3 comments

#15 - ModuleNotFoundError: No module named 'analyze'

Issue - State: open - Opened by Nifaste over 6 years ago - 5 comments

#14 - Error while reading index

Issue - State: closed - Opened by OnlyHigh over 6 years ago - 1 comment

#13 - Minimap2 compatibility

Issue - State: open - Opened by abayega almost 7 years ago - 3 comments

#12 - Adapter sequences in reads

Issue - State: open - Opened by abayega almost 7 years ago

#11 - Error while reading reference fasta

Issue - State: closed - Opened by OnlyHigh about 7 years ago - 2 comments

#10 - Partial match/annotation

Issue - State: closed - Opened by rojinsafavi about 7 years ago - 6 comments

#9 - Isoforms

Issue - State: closed - Opened by rojinsafavi about 7 years ago

#8 - Adjust sort requirement to be compatible with any samtools sorted file

Issue - State: closed - Opened by jason-weirather about 7 years ago - 1 comment

#7 - ValueError

Issue - State: closed - Opened by rojinsafavi about 7 years ago - 14 comments

#6 - annotation error

Issue - State: closed - Opened by ma-diroma over 7 years ago - 10 comments

#5 - Illumina alignment

Issue - State: closed - Opened by abayega over 7 years ago - 2 comments

#4 - Homopolymer Errors

Issue - State: open - Opened by JeanMiCarter almost 8 years ago - 2 comments

#3 - Deterministic outcomes of error calculations from randomly selected reads.

Issue - State: open - Opened by jason-weirather about 8 years ago

#2 - Reference sequence basename and comment

Issue - State: closed - Opened by ocxtal about 8 years ago - 4 comments

#1 - Great

Issue - State: closed - Opened by Sisov over 8 years ago - 2 comments

Ecosyste.ms: Issues

GitHub / jason-weirather/AlignQC issues and pull requests