jaredgk/PPP issues and pull requests

#50 - invalid specifier '>=3.6.*'

Issue - State: open - Opened by A-Hooft 4 months ago

#49 - Raya/add cv to admixture

Pull Request - State: closed - Opened by raywray 8 months ago

#48 - Merged vcf for vcf_four_gamete.py ?

Issue - State: open - Opened by GuitCos 8 months ago

#47 - VCF to SFS

Issue - State: open - Opened by ValentinaBoP over 1 year ago

#46 - Cannot update model file

Issue - State: open - Opened by Neato-Nick almost 2 years ago - 2 comments

#45 - eigenstrat not allowed, but described in docs

Issue - State: open - Opened by troycomi about 2 years ago

#44 - rpy2 not in requirements

Issue - State: open - Opened by troycomi about 2 years ago - 1 comment

#43 - Strange Fis estimates

Issue - State: open - Opened by siribi about 2 years ago - 1 comment

#42 - High Tajima's D value

Issue - State: closed - Opened by atoselan about 2 years ago - 5 comments

#41 - Combining files for many populations

Issue - State: closed - Opened by allisoncoomber about 2 years ago - 1 comment

#40 - vcf_to_ima.py error

Issue - State: open - Opened by xwang111 about 2 years ago - 3 comments

#39 - Support request : vcf_phase.py gives empty output

Issue - State: open - Opened by Chaima-Bouchenak over 2 years ago - 1 comment

#38 - vcf_to_treemix.py Error

Issue - State: open - Opened by Safae1501 over 2 years ago - 1 comment

#37 - vcf_to_gphocs failed

Issue - State: open - Opened by willright28 almost 3 years ago - 1 comment

#36 - vcf_bed_to_seq doesn't take BED file as input

Issue - State: closed - Opened by Neato-Nick about 3 years ago - 2 comments

#35 - Undefined picard_path when phasing

Issue - State: open - Opened by Neato-Nick about 3 years ago - 5 comments

#34 - Got error in the 1st step vcf_filter.py

Issue - State: closed - Opened by siyeongjun about 3 years ago - 7 comments

#33 - vcf to gphocs

Issue - State: open - Opened by glaudelrio over 3 years ago - 1 comment

#32 - logging PPP version

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#31 - informative_loci_filter not running on .vcf.gz

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#30 - informative_loci_filter is skipping all chromosomes but the first

Issue - State: closed - Opened by jodyhey over 3 years ago - 3 comments

#29 - vcf_split dir error

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#28 - vcf_split directory creation error

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#27 - four_gamete error

Issue - State: closed - Opened by jodyhey over 3 years ago - 4 comments

#26 - can't run bed_utilities.py --utility merge

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#25 - vcf_to_ima.py should have an option for the maximum number of loci to include

Issue - State: open - Opened by jodyhey over 3 years ago - 1 comment

#24 - informative_loci_filter errors

Issue - State: closed - Opened by jodyhey over 3 years ago - 13 comments

#23 - reposting genome size file issue

Issue - State: closed - Opened by jodyhey over 3 years ago - 3 comments

#22 - not clear how to make the chromosome size file

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#21 - model file error, example in documentation includes "tree", but this triggers error

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#20 - vcf_filter sample error

Issue - State: closed - Opened by jodyhey over 3 years ago - 1 comment

#19 - Missingness

Issue - State: closed - Opened by vappiah almost 4 years ago - 3 comments

#18 - Jody

Pull Request - State: closed - Opened by aewebb80 about 4 years ago

#17 - Jody

Pull Request - State: closed - Opened by aewebb80 over 4 years ago

#16 - VCF Phase XML addition

Pull Request - State: closed - Opened by jtedjo about 6 years ago

#15 - plink2 major issue

Issue - State: closed - Opened by jaredgk about 6 years ago - 1 comment

#14 - Phaser XML issue

Issue - State: closed - Opened by jaredgk about 6 years ago - 1 comment

#13 - Documentation Update

Issue - State: closed - Opened by aewebb80 about 6 years ago

#12 - Misc project management

Issue - State: closed - Opened by jaredgk about 7 years ago

#11 - VCF Filter

Issue - State: closed - Opened by aewebb80 over 7 years ago

#10 - UML diagrams

Issue - State: closed - Opened by jaredgk over 7 years ago

#9 - Update vcf_sampler output system

Issue - State: closed - Opened by aewebb80 over 7 years ago

#8 - liftOver

Issue - State: closed - Opened by jaredgk over 7 years ago

#7 - Phasing

Issue - State: closed - Opened by aewebb80 over 7 years ago

#6 - Extend vcftools wrapper

Issue - State: closed - Opened by aewebb80 over 7 years ago

#5 - Logging

Issue - State: closed - Opened by jaredgk over 7 years ago

#4 - Best practices

Issue - State: closed - Opened by jaredgk over 7 years ago

#3 - Features for vcf_ref_to_seq

Issue - State: closed - Opened by jaredgk over 7 years ago

#2 - Repo for papers

Issue - State: closed - Opened by jaredgk over 7 years ago - 1 comment
Labels: Epic

#1 - Test thing

Issue - State: closed - Opened by jaredgk over 7 years ago

GitHub / jaredgk/PPP issues and pull requests