janosh/pymatviz issues and pull requests

#242 - Add way to color atoms by coordination number in `structure_3d_plotly`

Issue - State: open - Opened by janosh 4 days ago
Labels: enhancement, plotly, structure

#241 - Improve missing value handling logic of `ptable_heatmap`

Pull Request - State: open - Opened by DanielYang59 13 days ago
Labels: matplotlib, api, ptable

#240 - Enhance warning message for default return type change of `ptable_heatmap`

Pull Request - State: closed - Opened by DanielYang59 13 days ago - 1 comment
Labels: matplotlib, api, ptable

#239 - Split `coordination.py` module into `plotly.py` and `helpers.py`

Pull Request - State: closed - Opened by janosh 13 days ago
Labels: testing, housekeeping

#238 - Speedup import and add regression check for import time

Pull Request - State: closed - Opened by DanielYang59 27 days ago - 13 comments
Labels: ux, pkg

#237 - Fix `/api` docs by migrating to `remark`/`rehype`

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: docs, fix

#236 - Add `coordination_vs_cutoff_line` plot function

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, local env

#235 - Coordination number histograms

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: plotly, feature, local env

#234 - Add `full_rdf`

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, rdf, local env

#233 - Experimental: add `show_bonds: bool | NearNeighbors = False` to `structure_(2|3)d_plotly`

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, structure

#232 - migrate `ptable_heatmap` to use recommended `return_type` as `figure`

Issue - State: closed - Opened by DanielYang59 about 1 month ago - 1 comment
Labels: matplotlib, ptable

#231 - Reuse optional dependency groups for single source of truth in `pyproject.toml`

Pull Request - State: closed - Opened by DanielYang59 about 1 month ago - 1 comment
Labels: pkg

#230 - Better missing value handling strategy for ptable heatmap

Issue - State: open - Opened by DanielYang59 about 1 month ago
Labels: matplotlib, ptable

#229 - Delete `correlation.py` module

Pull Request - State: closed - Opened by janosh about 1 month ago - 3 comments
Labels: housekeeping, breaking, pkg

#228 - Custom site hover texts in `pmv.structure_(2|3)d_plotly`

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, structure

#228 - Custom site hover texts in `pmv.structure_(2|3)d_plotly`

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, structure

#227 - Rainclouds

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: plotly, feature

#227 - Raincloud plots

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: plotly, feature

#226 - Fix `ptable_heatmap_ratio` following change of default `count_elements` `fill_value` to 0

Pull Request - State: closed - Opened by DanielYang59 about 1 month ago - 2 comments
Labels: breaking, api

#225 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago

#224 - use `pytest-split` in GitHub Action

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: testing, dx, ci

#223 - Vertically/horizontally stacked XRD plots

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, xrd

#222 - Element-projected phonon DOS and bandstructure

Issue - State: open - Opened by janosh about 1 month ago
Labels: enhancement, plotly, phonons

#221 - `save_and_compress_svg` cannot be used in non-editable mode

Issue - State: closed - Opened by DanielYang59 about 1 month ago - 1 comment
Labels: io

#220 - Support plotting site vectors like forces/magmoms in `structure_(2|3)d_plotly`

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, structure

#219 - Render spheres with hover tooltip on unit cell corners in `pmv.structure_(2|3)d_plotly`

Pull Request - State: closed - Opened by janosh about 1 month ago
Labels: enhancement, plotly, structure

#218 - `structure_(2|3)d_plotly` allow overriding subplot title's y position and anchor

Pull Request - State: closed - Opened by janosh about 2 months ago - 1 comment
Labels: plotly, linting, fix, structure

#217 - pin kaleido==0.2.1

Pull Request - State: closed - Opened by theochemtheo about 2 months ago - 5 comments
Labels: pkg, deps

#216 - Unable to install with extras={test,export-figs,make-assets} on mac due to upstream issue with kaleido

Issue - State: closed - Opened by theochemtheo about 2 months ago - 3 comments
Labels: pkg, deps

#215 - behavior change in `ptable_heatmap_ratio`

Issue - State: closed - Opened by DanielYang59 about 2 months ago - 1 comment
Labels: matplotlib, ptable

#214 - Add `structure_3d_plotly`

Pull Request - State: closed - Opened by janosh about 2 months ago
Labels: plotly, structure, feature

#213 - Add `structure_2d_plotly` to `pymatviz/structure_viz.py`

Pull Request - State: closed - Opened by janosh about 2 months ago
Labels: plotly, structure, feature

#212 - Fix `xrd_pattern` not allowing `annotate_peaks=0` to disable peak annotation

Pull Request - State: closed - Opened by janosh about 2 months ago
Labels: fix, xrd, rdf

#211 - Fix `calculate_rdf` not accounting for periodic boundaries

Pull Request - State: closed - Opened by janosh about 2 months ago
Labels: fix, rdf, local env

#210 - Add `scale: float = 1` to `ptable_heatmap_plotly`

Pull Request - State: closed - Opened by minhsueh about 2 months ago - 4 comments
Labels: enhancement, plotly, ptable

#209 - `pymatviz` import cost way too high

Issue - State: closed - Opened by janosh about 2 months ago - 3 comments
Labels: ux, pkg

#208 - Allow interactively inspect plots

Pull Request - State: open - Opened by DanielYang59 about 2 months ago - 3 comments
Labels: testing, matplotlib

#207 - Clean up var names in unit tests, avoid MP API access in GitHub workflow

Pull Request - State: closed - Opened by DanielYang59 about 2 months ago - 12 comments
Labels: testing, linting

#206 - Support `list`/`dict` of structures in `element_pair_rdfs`

Pull Request - State: closed - Opened by janosh about 2 months ago
Labels: enhancement, rdf, local env

#205 - Add kwarg `use_tooltips: bool = True` to `df_to_html` (prev `df_to_html_table`)

Pull Request - State: closed - Opened by janosh about 2 months ago
Labels: breaking, api, io

#204 - Fix RDF SVG asset paths in readme

Pull Request - State: closed - Opened by DanielYang59 about 2 months ago
Labels: docs

#203 - `element_pair_rdfs` plots radial distribution functions (RDFs) for element pairs in a structure

Pull Request - State: closed - Opened by janosh about 2 months ago - 1 comment
Labels: plotly, rdf, feature, local env

#202 - (Not) Exclude `tests` from source distribution, and drop python2 tag for wheel

Pull Request - State: closed - Opened by DanielYang59 about 2 months ago - 1 comment
Labels: pkg

#201 - Tests are included in source distribution?

Issue - State: closed - Opened by DanielYang59 about 2 months ago - 6 comments
Labels: pkg

#200 - Add `add_annotation` functionality for ptable plotters

Pull Request - State: closed - Opened by DanielYang59 2 months ago - 1 comment
Labels: enhancement, matplotlib, ptable

#199 - Restore `ptable_hists` kwarg `anno_kwds` (or something similar)

Issue - State: closed - Opened by janosh 2 months ago - 1 comment
Labels: matplotlib, ptable

#198 - Add `IS_IPYTHON` global

Pull Request - State: closed - Opened by janosh 2 months ago
Labels: enhancement

#197 - [Dev] `pre-commit.eslint` gives a ton of errors running locally

Issue - State: open - Opened by DanielYang59 3 months ago - 1 comment
Labels: help wanted, ci

#196 - ruff fixes

Pull Request - State: closed - Opened by DanielYang59 3 months ago - 1 comment
Labels: housekeeping, types

#195 - Bump min supported Python to 3.10

Pull Request - State: closed - Opened by janosh 3 months ago - 6 comments
Labels: breaking, pkg, ci, types

#194 - Self-import refactor

Pull Request - State: closed - Opened by janosh 3 months ago - 5 comments
Labels: housekeeping, pkg

#193 - `density_scatter_plotly` add kwarg `facet_col: str | None = None`

Pull Request - State: closed - Opened by janosh 3 months ago
Labels: enhancement, plotly, scatter

#192 - `bin_df_cols` leave input df unchanged

Pull Request - State: closed - Opened by janosh 3 months ago
Labels: enhancement, ux

#191 - Re-export all submodules/subpackages from `pymatviz.init.py`

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: enhancement, ux, pkg

#190 - `density_scatter_plotly` QoL tweaks

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: enhancement, plotly, scatter

#189 - Breaking: drop `plot_` prefix from multiple functions

Pull Request - State: closed - Opened by janosh 4 months ago - 1 comment
Labels: breaking, api

#188 - Overly large font size (or other elements) causing `ptable_heatmap` tiles to shrink

Issue - State: open - Opened by CompRhys 4 months ago - 10 comments
Labels: bug, matplotlib, ptable

#187 - Fix `svgo` workflow for ptable scatter plots

Pull Request - State: closed - Opened by DanielYang59 4 months ago - 6 comments
Labels: fix, ci

#186 - Fix `svgo` compress workflow for ptable scatter plots

Pull Request - State: closed - Opened by DanielYang59 4 months ago - 1 comment

#185 - Add protostructure terminology to enum

Pull Request - State: closed - Opened by CompRhys 4 months ago
Labels: enhancement, dx

#184 - `svgo` might break ptable scatter plots

Issue - State: closed - Opened by DanielYang59 4 months ago
Labels: dx

#183 - Enable tile size setter and f-block offset setter in ptable heatmap plotter

Issue - State: open - Opened by DanielYang59 4 months ago
Labels: enhancement, matplotlib, ptable

#182 - Update the function names for wren utils given breaking changes in Aviary

Pull Request - State: closed - Opened by CompRhys 4 months ago

#181 - [Dev] GitHub Pages- Build site workflow is failing

Issue - State: closed - Opened by DanielYang59 4 months ago - 2 comments

#180 - Fix ptable scatter examples in homepage

Pull Request - State: closed - Opened by DanielYang59 4 months ago - 1 comment
Labels: docs

#179 - Add `pymatviz.io.df_to_svg`

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: enhancement, matplotlib, breaking, io

#178 - Better default `ptable_heatmap_plotly` tooltips

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: enhancement, testing, plotly, ptable

#177 - Fix unit test for ptable plotly

Pull Request - State: closed - Opened by DanielYang59 4 months ago - 4 comments
Labels: fix, ci

#176 - Moving enums may have broken end users pickle's, reduce to str when pickling to be more backwards compatible going forward.

Pull Request - State: closed - Opened by CompRhys 4 months ago
Labels: fix

#175 - Better `density_scatter_plotly`

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: enhancement, plotly, scatter

#174 - Fix `ptable_heatmap_plotly` color scale tick labels for `log=True`

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: plotly, fix, ptable, examples

#173 - Fix missing keys `Te` + `Nd` in `ELEM_COLORS_VESTA` and support it in `plot_structure_2d`

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: matplotlib, structure, colors

#172 - Fix `log_density` in `density_scatter_plotly`

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: plotly, breaking, fix, scatter

#171 - Split `powerups` module by `backend`: `matplotlib`/`plotly`/`both`

Pull Request - State: closed - Opened by janosh 4 months ago
Labels: enhancement, pkg, powerups

#170 - Fix `count_elements` for series of `Composition`

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: testing, fix, ptable

#169 - Fix and test `ptable_heatmap` text color logic

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: matplotlib, fix, ptable

#168 - `plot_xrd_pattern` accept `DiffractionPattern | Structure` as input

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: enhancement, plotly, xrd

#167 - Add `plot_xrd_pattern()` for creating interactive XRD patterns with plotly

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: enhancement, plotly, structure

#166 - Fix `density_scatter_plotly` metric annotation

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: testing, plotly, fix

#165 - Add `toggle_log_linear_y_axis` powerup

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: enhancement, plotly, fix

#164 - [Dev] Include asset makers into CI tests

Issue - State: closed - Opened by DanielYang59 5 months ago - 2 comments
Labels: enhancement, dx

#163 - Fix bad NPY002 migration

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: fix, examples

#162 - Fix `ruff` `NPY002`

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: docs, linting

#161 - `density_scatter_plotly()`

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: plotly, breaking, parity, examples

#160 - Add `density_scatter_plotly`

Issue - State: closed - Opened by janosh 5 months ago - 4 comments
Labels: enhancement, plotly, parity

#159 - Add `pymatviz.histogram.plot_histogram`

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: enhancement, plotly, matplotlib, breaking, histograms

#158 - Fix `ptable_heatmap_ratio` legend

Pull Request - State: closed - Opened by janosh 5 months ago
Labels: matplotlib, fix, ptable

#157 - [Breaking] Refactor ptable heatmap plotter

Pull Request - State: closed - Opened by DanielYang59 5 months ago - 7 comments
Labels: enhancement, matplotlib, breaking, ptable

#156 - Support passing sequence of structures to `plot_structure_2d()` to be plotted in grid

Pull Request - State: closed - Opened by janosh 6 months ago
Labels: enhancement, matplotlib, structure

#155 - `ptable_scatters` allow 3rd data dimension for colormap

Pull Request - State: closed - Opened by DanielYang59 6 months ago - 3 comments
Labels: enhancement, matplotlib, ptable

#154 - Fix `PTableProjector.hide_f_block` property

Pull Request - State: closed - Opened by janosh 6 months ago
Labels: fix, ptable

#153 - ImportError from matplotlib - get_cmap

Issue - State: closed - Opened by rkingsbury 6 months ago - 3 comments
Labels: bug, matplotlib, ptable

#152 - Handle missing value (NaN) and infinity for ptable data

Pull Request - State: closed - Opened by DanielYang59 6 months ago - 4 comments
Labels: enhancement, ptable, pandas

#151 - [Enhancement] Allow adding `elem_type_legend` and color element tiles by `color_elem_strategy` for ptable scatter/line plotters

Issue - State: closed - Opened by DanielYang59 6 months ago - 1 comment
Labels: enhancement, ptable

GitHub / janosh/pymatviz issues and pull requests