Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / janeliascicomp/msg issues and pull requests

#47 - Add support for paired-end read alignment

Issue - State: closed - Opened by fdchevalier almost 3 years ago - 1 comment

#47 - Add support for paired-end read alignment

Issue - State: closed - Opened by fdchevalier almost 3 years ago - 1 comment

#46 - MSG can't process paired-end sequences

Issue - State: closed - Opened by fdchevalier almost 3 years ago

#46 - MSG can't process paired-end sequences

Issue - State: closed - Opened by fdchevalier almost 3 years ago

#45 - Solve CSV field error

Pull Request - State: open - Opened by fdchevalier almost 3 years ago - 4 comments

#45 - Solve CSV field error

Pull Request - State: open - Opened by fdchevalier almost 3 years ago - 4 comments

#44 - get_sample_data.sh file locations have changed

Issue - State: closed - Opened by pmcarlton almost 7 years ago

#44 - get_sample_data.sh file locations have changed

Issue - State: closed - Opened by pmcarlton almost 7 years ago

#43 - Master

Pull Request - State: closed - Opened by dstern over 8 years ago

#43 - Master

Pull Request - State: closed - Opened by dstern over 8 years ago

#42 - Compilation of simple fixes and first attempt at BWA-MEM support

Pull Request - State: closed - Opened by YourePrettyGood over 8 years ago - 8 comments

#42 - Compilation of simple fixes and first attempt at BWA-MEM support

Pull Request - State: closed - Opened by YourePrettyGood over 8 years ago - 8 comments

#41 - add msg.cfg parameter for one.sit.per.read in fit-hmm.R

Issue - State: open - Opened by gregpinero about 11 years ago

#41 - add msg.cfg parameter for one.sit.per.read in fit-hmm.R

Issue - State: open - Opened by gregpinero about 11 years ago

#40 - revert pre-theta

Pull Request - State: closed - Opened by dstern over 11 years ago

#40 - revert pre-theta

Pull Request - State: closed - Opened by dstern over 11 years ago

#39 - Have MSG Log all version numbers of dependencies

Issue - State: open - Opened by gregpinero over 12 years ago

#39 - Have MSG Log all version numbers of dependencies

Issue - State: open - Opened by gregpinero over 12 years ago

#38 - summaryPlots.R - Single Individual Fix

Issue - State: open - Opened by gregpinero over 12 years ago

#38 - summaryPlots.R - Single Individual Fix

Issue - State: open - Opened by gregpinero over 12 years ago

#37 - Parsing config files - skip over blank values

Issue - State: open - Opened by gregpinero over 12 years ago

#37 - Parsing config files - skip over blank values

Issue - State: open - Opened by gregpinero over 12 years ago

#35 - Viterbi HMM

Pull Request - State: open - Opened by shackett over 12 years ago - 17 comments

#35 - Viterbi HMM

Pull Request - State: open - Opened by shackett over 12 years ago - 17 comments

#32 - Handle slashes (and other chars) in barcodes

Issue - State: open - Opened by gregpinero over 12 years ago

#32 - Handle slashes (and other chars) in barcodes

Issue - State: open - Opened by gregpinero over 12 years ago

#29 - Don't quality trim files if a trimmed file is already present

Issue - State: closed - Opened by gregpinero almost 13 years ago

#29 - Don't quality trim files if a trimmed file is already present

Issue - State: closed - Opened by gregpinero almost 13 years ago

#27 - Create more documentation - see notes

Issue - State: open - Opened by gregpinero almost 13 years ago

#27 - Create more documentation - see notes

Issue - State: open - Opened by gregpinero almost 13 years ago

#26 - Remove poor quality reads from fastq file right away using TQSfastq.py

Issue - State: closed - Opened by gregpinero almost 13 years ago - 3 comments

#26 - Remove poor quality reads from fastq file right away using TQSfastq.py

Issue - State: closed - Opened by gregpinero almost 13 years ago - 3 comments

#25 - Samtools location

Pull Request - State: open - Opened by lparsons about 13 years ago - 7 comments

#25 - Samtools location

Pull Request - State: open - Opened by lparsons about 13 years ago - 7 comments

#23 - Include More Dependencies in Source/GitHub

Issue - State: open - Opened by gregpinero about 13 years ago

#23 - Include More Dependencies in Source/GitHub

Issue - State: open - Opened by gregpinero about 13 years ago

#22 - Change Perl Modules to use strict mode

Issue - State: open - Opened by gregpinero about 13 years ago

#22 - Change Perl Modules to use strict mode

Issue - State: open - Opened by gregpinero about 13 years ago

#21 - msg.pl - updating genomes step - samtools view command references missing var

Issue - State: closed - Opened by gregpinero about 13 years ago - 1 comment

#21 - msg.pl - updating genomes step - samtools view command references missing var

Issue - State: closed - Opened by gregpinero about 13 years ago - 1 comment

#20 - Parse gzipped fastq files directly

Issue - State: closed - Opened by gregpinero about 13 years ago

#20 - Parse gzipped fastq files directly

Issue - State: closed - Opened by gregpinero about 13 years ago

#17 - Update Code with Tina's changes

Issue - State: closed - Opened by JaneliaSciComp over 13 years ago

#17 - Update Code with Tina's changes

Issue - State: closed - Opened by JaneliaSciComp over 13 years ago

#16 - Add verbosity option for data output

Issue - State: closed - Opened by gregpinero over 13 years ago - 1 comment

#16 - Add verbosity option for data output

Issue - State: closed - Opened by gregpinero over 13 years ago - 1 comment

#15 - Make code run faster

Issue - State: closed - Opened by gregpinero over 13 years ago

#15 - Make code run faster

Issue - State: closed - Opened by gregpinero over 13 years ago

#14 - Investigate and Fix Strange Error Message

Issue - State: open - Opened by gregpinero over 13 years ago

#14 - Investigate and Fix Strange Error Message

Issue - State: open - Opened by gregpinero over 13 years ago

#13 - Validate that all output files were created

Issue - State: closed - Opened by gregpinero over 13 years ago

#11 - Investigate (and possibly fix) source of stochasticity

Issue - State: closed - Opened by gregpinero over 13 years ago

#10 - Github - Set up release tags

Issue - State: closed - Opened by gregpinero over 13 years ago

#9 - min_coverage parameter is not read from msg.cfg

Issue - State: closed - Opened by gregpinero over 13 years ago

#7 - Feature: change code to use max_coverage

Issue - State: closed - Opened by JaneliaSciComp over 13 years ago

#6 - feature: msgRun1.sh doesn't need to wait can be in parallel

Issue - State: closed - Opened by JaneliaSciComp over 13 years ago - 2 comments

#3 - Bug: Don't require blank line on last line of barcodes file

Issue - State: closed - Opened by JaneliaSciComp over 13 years ago - 2 comments

#2 - Bug: allow spaces around = in msg.cfg

Issue - State: closed - Opened by JaneliaSciComp over 13 years ago

#1 - Bring in pull requests from tinathu/msg

Issue - State: closed - Opened by JaneliaSciComp over 13 years ago - 1 comment