Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / james-thorson-noaa/vast issues and pull requests

#395 - Addressing convergence failures in VAST models with factor covariates

Issue - State: closed - Opened by OxanaHart 16 days ago - 3 comments

#100 - Changes introduced in response to the following GitHub issue: https:/…

Pull Request - State: closed - Opened by agruss2 over 6 years ago

#99 - Suggested changes in "VAST--single-species_example.Rmd"

Issue - State: closed - Opened by agruss2 over 6 years ago - 3 comments

#98 - Cross validation when using dummy observations

Issue - State: closed - Opened by ACharsley over 6 years ago - 8 comments

#97 - Opt results

Issue - State: closed - Opened by kvert-pre over 6 years ago - 4 comments

#96 - dependency of TMB package

Issue - State: closed - Opened by kellijohnson-NOAA over 6 years ago - 1 comment

#95 - The distribution of the random effects

Issue - State: closed - Opened by ACharsley over 6 years ago - 1 comment

#94 - Covariate setup for constant covariate in multivariate model

Issue - State: closed - Opened by CPerretti over 6 years ago - 4 comments

#93 - Adding V4.2.0 which fixes a bug..

Pull Request - State: closed - Opened by James-Thorson over 6 years ago - 1 comment

#92 - Knot on an island when adding depth as a covariate

Issue - State: closed - Opened by John-R-Wallace-NOAA over 6 years ago - 1 comment

#91 - Development

Pull Request - State: closed - Opened by James-Thorson over 6 years ago

#90 - QQ_Fn for VAST: plot for each category

Pull Request - State: closed - Opened by zeroyin over 6 years ago - 10 comments

#89 - make compile warnings go away (issue #34)

Pull Request - State: closed - Opened by iantaylor-NOAA over 6 years ago - 1 comment

#87 - broken link to PDF of User Manual in README

Issue - State: closed - Opened by iantaylor-NOAA over 6 years ago - 3 comments

#86 - Overdispersion random effects parameter names are inconsistent

Issue - State: closed - Opened by hoyles over 6 years ago - 1 comment

#85 - Extrapolation across hemispheres

Issue - State: closed - Opened by peterkuriyama over 6 years ago - 1 comment

#84 - Edit map_hypervariance()

Pull Request - State: closed - Opened by CPerretti over 6 years ago

#82 - recommend removing L83-85 in plot_factors function

Issue - State: closed - Opened by zeroyin over 6 years ago - 3 comments

#81 - Suggestion: Match t_yz to t_iz for seasonal models

Issue - State: closed - Opened by CPerretti almost 7 years ago - 1 comment

#80 - Error message when trying to run the multi-species example

Issue - State: closed - Opened by agruss2 almost 7 years ago - 4 comments

#79 - add function to give current cpp version

Issue - State: closed - Opened by wStockhausen almost 7 years ago - 3 comments
Labels: enhancement

#78 - Index_xcyl calculations

Issue - State: closed - Opened by kvert-pre almost 7 years ago - 1 comment

#77 - Rhoconfig switched with options in VAST manual

Issue - State: closed - Opened by kvert-pre almost 7 years ago - 1 comment

#76 - Making short-term spatial density prediction using VAST

Issue - State: closed - Opened by HaikunXu almost 7 years ago - 7 comments

#75 - Specifying catchability covariates for encounter probability only

Issue - State: closed - Opened by curryc2 almost 7 years ago - 1 comment

#74 - Fix for extrapolation area plot

Issue - State: closed - Opened by CPerretti almost 7 years ago - 1 comment

#73 - Modelling presence-absence

Issue - State: closed - Opened by hoyles almost 7 years ago - 1 comment

#72 - Samples as sum across categories

Pull Request - State: closed - Opened by James-Thorson almost 7 years ago

#71 - Recommendation: Add error if estimating vessel effects with a single vessel

Issue - State: closed - Opened by CPerretti almost 7 years ago - 1 comment

#70 - ObsModel Guidance for 100% encounter rates

Issue - State: closed - Opened by bellemlj almost 7 years ago - 1 comment

#69 - Error in max(t_iz) - min(t_iz) : non-numeric argument to binary operator

Issue - State: closed - Opened by Thom-Teears almost 7 years ago - 9 comments

#68 - Adding land color

Issue - State: closed - Opened by EllenY almost 7 years ago - 1 comment

#67 - Fit multiple data types

Pull Request - State: closed - Opened by James-Thorson almost 7 years ago

#66 - Installing the package "pander" only if not already installed

Issue - State: closed - Opened by agruss2 almost 7 years ago - 1 comment

#65 - Using Prepare_User_Extrapolation_Data_Fn.R

Issue - State: closed - Opened by agruss2 almost 7 years ago - 4 comments

#63 - Error using devtools::install_github("james-thorson/VAST")

Issue - State: open - Opened by areeder8 almost 7 years ago - 2 comments

#62 - How to install or update the package "ThorsonUtilities"?

Issue - State: closed - Opened by sea521 almost 7 years ago - 1 comment

#61 - VAST abundance index question

Issue - State: closed - Opened by EllenY almost 7 years ago - 1 comment

#60 - How to include measured categorical variables affecting catch rates?

Issue - State: closed - Opened by sea521 almost 7 years ago - 1 comment

#59 - Question for the "Optimize" function in TMBhelper

Issue - State: closed - Opened by sea521 almost 7 years ago - 2 comments

#58 - Error when running SpatialDeltaGLMM:::Plot_range_quantiles

Issue - State: closed - Opened by CPerretti about 7 years ago

#57 - y_lim error on PlotIndex_Fn & Plot_range_shifts

Issue - State: closed - Opened by hmorzaria about 7 years ago - 8 comments

#56 - SpatialDeltaGLMM:::plot_residuals error when using seasonal data

Issue - State: closed - Opened by CPerretti about 7 years ago - 1 comment

#55 - .cpp files fail to compile

Issue - State: closed - Opened by sea521 about 7 years ago - 7 comments

#54 - X_xtp formatting help

Issue - State: closed - Opened by areeder8 about 7 years ago - 2 comments

#53 - Error in compile(paste0(Version, ".cpp")) : Compilation failed + Build_TMB_Fn?

Issue - State: closed - Opened by Hanqingpeng about 7 years ago - 7 comments

#52 - Devel

Pull Request - State: closed - Opened by James-Thorson about 7 years ago

#51 - ObsModel link option 3

Pull Request - State: closed - Opened by rgirardi about 7 years ago - 1 comment

#50 - Add tutorials/user-manual to Vignettes

Pull Request - State: closed - Opened by James-Thorson about 7 years ago

#49 - undoing setwd() in Build_TMB_Fn?

Issue - State: closed - Opened by DanOvando over 7 years ago - 3 comments

#48 - Fixes dimensions of n_t and t_yz in Data_fn when data years are not sequential

Pull Request - State: closed - Opened by DanOvando over 7 years ago - 3 comments

#46 - Devel

Pull Request - State: closed - Opened by James-Thorson over 7 years ago

#45 - Devel

Pull Request - State: closed - Opened by James-Thorson over 7 years ago

#44 - Covariate matrix dimension size

Issue - State: closed - Opened by mcgowand over 7 years ago - 3 comments

#43 - add V2.6.0...

Pull Request - State: closed - Opened by James-Thorson over 7 years ago

#42 - Q about list of all fixed and random effects

Issue - State: closed - Opened by gertsevv over 7 years ago - 1 comment

#41 - Data_Geostat

Issue - State: closed - Opened by smartell over 7 years ago - 3 comments

#40 - binned-poisson data

Issue - State: closed - Opened by ceciliaOLearySBU over 7 years ago - 5 comments

#39 - PbsModel check in Data_Fn causes error in pre 2.5.0 version

Issue - State: closed - Opened by pdolder over 7 years ago - 1 comment

#38 - Knots

Issue - State: closed - Opened by ceciliaOLearySBU over 7 years ago - 2 comments

#37 - Add warning that X_xj deprecated

Issue - State: closed - Opened by pdolder over 7 years ago - 1 comment

#36 - Update to: West_Coast_Annual_example_2017

Issue - State: closed - Opened by John-R-Wallace-NOAA over 7 years ago - 1 comment

#34 - Lots of warnings about suggested cpp syntax

Issue - State: closed - Opened by iantaylor-NOAA over 7 years ago - 8 comments

#33 - error message

Issue - State: closed - Opened by EllenY over 7 years ago - 1 comment

#32 - update a few things in example script

Issue - State: open - Opened by iantaylor-NOAA over 7 years ago

#31 - VAST example for AFSC Triennial survey

Issue - State: closed - Opened by gertsevv over 7 years ago - 1 comment

#30 - Add function to find lastest version number

Pull Request - State: closed - Opened by kellijohnson-NOAA over 7 years ago - 1 comment

#29 - Years2Include Subset the Table_for_SS3.csv file

Issue - State: open - Opened by chantelwetzel-noaa over 7 years ago

#28 - consider adding "Advanced Topics" to documentation

Issue - State: closed - Opened by iantaylor-NOAA over 7 years ago - 5 comments

#27 - check units of area swept

Issue - State: closed - Opened by iantaylor-NOAA over 7 years ago - 1 comment

#26 - add triennial survey to west coast example

Issue - State: closed - Opened by iantaylor-NOAA over 7 years ago - 1 comment

#25 - Fixing INLA on some older Linux system

Issue - State: closed - Opened by John-R-Wallace-NOAA over 7 years ago

#24 - time varying catchability

Issue - State: closed - Opened by N-DucharmeBarth over 7 years ago - 1 comment

#23 - Add identifiability check for Q_ik and X_xtp

Issue - State: open - Opened by James-Thorson over 7 years ago

#22 - Add fine-scale variation in covariates

Issue - State: closed - Opened by James-Thorson over 7 years ago - 3 comments

#21 - California_current region for the extrapolation grid contains the CCA

Issue - State: closed - Opened by John-R-Wallace-NOAA over 7 years ago - 2 comments

#20 - Check for and use the latest executable available

Issue - State: closed - Opened by John-R-Wallace-NOAA over 7 years ago - 1 comment

#19 - Interpreting spatial-temporal factors

Issue - State: closed - Opened by larogers123 over 7 years ago - 1 comment

#18 - Too many zeroes?

Issue - State: closed - Opened by LibbyLogerwell over 7 years ago - 1 comment

#17 - Index calculations with random walks on

Issue - State: closed - Opened by GreatDana almost 8 years ago - 3 comments

#16 - Aleutian Islands example data interpretation seems off

Issue - State: closed - Opened by jimianelli almost 8 years ago - 2 comments

#15 - plot_residuals in VAST-single-species-example

Issue - State: open - Opened by jin-gao almost 8 years ago

#14 - plot_factors

Issue - State: closed - Opened by jin-gao almost 8 years ago - 1 comment

#13 - Error with Data_Fn

Issue - State: closed - Opened by Charles-Adams-NOAA almost 8 years ago - 2 comments

#12 - SpatialDeltaGLMM::Plot_data_and_knots does not work

Issue - State: closed - Opened by MarkMaunder almost 8 years ago - 7 comments

#11 - Memory allocation

Issue - State: closed - Opened by MarkMaunder almost 8 years ago - 3 comments

#10 - compile error

Issue - State: closed - Opened by MarkMaunder almost 8 years ago - 5 comments

#9 - Modify Rmarkdown PDF...

Issue - State: closed - Opened by James-Thorson almost 8 years ago

#8 - Fix `PlotIndex_Fn` for NEFSC

Issue - State: closed - Opened by James-Thorson almost 8 years ago - 1 comment

#7 - Requirement for Prop_nonzero != 0 | 1 when using TFpred

Issue - State: closed - Opened by pdolder almost 8 years ago - 6 comments

#6 - ThorsonUtilities package also needs to be installed

Issue - State: closed - Opened by jin-gao about 8 years ago - 4 comments

#5 - TMB issue

Issue - State: closed - Opened by EllenY about 8 years ago - 2 comments

#4 - Plot_factors()

Issue - State: closed - Opened by pdolder about 8 years ago - 3 comments

#3 - Coherence() returns error

Issue - State: closed - Opened by pdolder about 8 years ago - 2 comments

#2 - Function to output spatial abundance

Issue - State: closed - Opened by pdolder about 8 years ago - 5 comments