james-thorson-noaa/fishstatsutils issues and pull requests

#96 - how to modify custom extrapolation grid to prevent deparse_unit error?

Issue - State: closed - Opened by sgaichas about 1 month ago - 2 comments

#95 - Dev

Pull Request - State: closed - Opened by James-Thorson-NOAA 4 months ago

#94 - Options to simulate new dynamics and sampling data

Issue - State: open - Opened by agruss2 8 months ago

#93 - Adding capelin data for the projections demo

Pull Request - State: open - Opened by agruss2 9 months ago

#92 - Error in convert_shapefile function - no applicable method for `@` applied to an object of class "sf"

Issue - State: closed - Opened by AndyUEA 10 months ago - 4 comments

#91 - Dev

Pull Request - State: closed - Opened by James-Thorson-NOAA 11 months ago

#90 - Cannot install `FishStatsUtils`, `rgdal` package is no longer available

Issue - State: closed - Opened by jkbest2 about 1 year ago - 1 comment

#89 - Dev

Pull Request - State: closed - Opened by James-Thorson-NOAA almost 2 years ago

#88 - Install errors on CentOS 8 - conda environment

Issue - State: closed - Opened by Jason-Conner-NOAA almost 2 years ago - 2 comments

#87 - Install issues for INLA and FishStatsUtils - maybe INLA or rtools version issue?

Issue - State: closed - Opened by MargaretSiple-NOAA almost 2 years ago - 4 comments

#86 - Possible (?) error in issue check for oneStepAhead residuals in summary.fit_model()

Issue - State: closed - Opened by N-DucharmeBarth-NOAA almost 2 years ago - 1 comment

#85 - Dev

Pull Request - State: closed - Opened by James-Thorson-NOAA about 2 years ago

#84 - suggestion: make map_data an argument to make_mesh

Issue - State: closed - Opened by N-DucharmeBarth-NOAA over 2 years ago - 2 comments

#83 - suggestion: fit_model checks for mid-level objects (e.g. extrapolation_list)

Issue - State: closed - Opened by N-DucharmeBarth-NOAA over 2 years ago - 6 comments

#82 - remove RandomFields from Imports ...

Pull Request - State: closed - Opened by James-Thorson-NOAA over 2 years ago

#81 - RandomFields was removed from CRAN on 2022-0504

Issue - State: closed - Opened by kellijohnson-NOAA over 2 years ago - 4 comments

#80 - test merge

Pull Request - State: closed - Opened by James-Thorson-NOAA over 2 years ago

#79 - Updating AFSC grids for EBS / NBS and adding Chukchi

Pull Request - State: closed - Opened by James-Thorson-NOAA over 2 years ago

#78 - Updating AFSC grids for EBS / NBS and adding Chukchi ...

Pull Request - State: closed - Opened by James-Thorson-NOAA over 2 years ago

#77 - Dev

Pull Request - State: closed - Opened by James-Thorson-NOAA about 3 years ago

#76 - Dependency installation: plotKML removed from CRAN

Issue - State: closed - Opened by Jason-Conner-NOAA about 3 years ago - 3 comments

#75 - FishStatsUtils 2.9.1 fit_model: function argument error with covariates

Issue - State: closed - Opened by Jason-Conner-NOAA over 3 years ago - 1 comment

#74 - plot_results() and plot_biomass_index()

Issue - State: closed - Opened by David-S-Hanisko-NOAA over 3 years ago - 1 comment

#73 - Error: Check simulated residuals for NA values

Issue - State: closed - Opened by Jason-Conner-NOAA over 3 years ago - 12 comments

#72 - Error in summary(fit_model) when what="residuals"

Issue - State: closed - Opened by N-DucharmeBarth over 3 years ago - 2 comments

#71 - combine_extrapolation_info doesn't create strata_per_region with user-defined grid

Issue - State: open - Opened by Jason-Conner-NOAA over 3 years ago - 7 comments

#70 - Dev

Pull Request - State: closed - Opened by James-Thorson-NOAA over 3 years ago

#69 - Update docs and examples

Pull Request - State: closed - Opened by James-Thorson-NOAA over 3 years ago

#68 - Season

Pull Request - State: closed - Opened by James-Thorson-NOAA almost 4 years ago

#67 - Contrasts parameter for factor covariates

Pull Request - State: closed - Opened by aallyn almost 4 years ago - 1 comment

#66 - fit_model and make_covs ready for PR

Pull Request - State: closed - Opened by aallyn almost 4 years ago - 1 comment

#65 - Add option to specify the path in get_latest_version so it works with CI and locally

Pull Request - State: closed - Opened by Cole-Monnahan-NOAA almost 4 years ago

#64 - Minor issue regarding rotate_factors in the development branch

Issue - State: closed - Opened by agruss2 almost 4 years ago - 1 comment

#63 - Changes in load_example.R for all examples to work

Pull Request - State: closed - Opened by agruss2 almost 4 years ago - 2 comments

#62 - Changes in load_example.R for all examples to work

Pull Request - State: closed - Opened by agruss2 almost 4 years ago

#61 - Update of the PESC example datasets

Pull Request - State: closed - Opened by agruss2 almost 4 years ago - 1 comment

#60 - Update in the PESC example

Pull Request - State: closed - Opened by agruss2 almost 4 years ago

#59 - Update in the PESC example

Pull Request - State: closed - Opened by agruss2 almost 4 years ago - 1 comment

#58 - Streamline make_kmeans to avoid recalculation of extrapolation grid and improve console output

Pull Request - State: closed - Opened by Cole-Monnahan-NOAA almost 4 years ago - 1 comment

#57 - Update make_settings documentation

Pull Request - State: closed - Opened by Cole-Monnahan-NOAA almost 4 years ago - 1 comment

#56 - Very minor change in make_kmeans.R (and wherever relevant)

Issue - State: closed - Opened by agruss2 almost 4 years ago - 1 comment

#55 - Potential typo in Prepare_XXXX_Extrapolation_Data_Fn.R

Issue - State: closed - Opened by agruss2 almost 4 years ago - 1 comment

#54 - Making Quantile Residulas and VAST is not linked as DLL

Issue - State: closed - Opened by dshanisko about 4 years ago - 7 comments

#53 - ... in `plot_results` leads to warning with `Dens_xt = do.call(what = plot_maps, args = plot_maps_args)`

Issue - State: open - Opened by kellijohnson-NOAA about 4 years ago

#52 - Development

Pull Request - State: closed - Opened by James-Thorson-NOAA about 4 years ago

#51 - fix(Prepare_XXXX_Extrapolation_Data_Fn): Depth was mislabeled

Pull Request - State: closed - Opened by kellijohnson-NOAA about 4 years ago - 2 comments

#50 - proj4string in plot_data leads to warning message with spTransform

Issue - State: closed - Opened by kellijohnson-NOAA over 4 years ago - 4 comments

#49 - Supporting VAST release 3.5.0

Pull Request - State: closed - Opened by James-Thorson-NOAA over 4 years ago

#48 - for stream networks only, minor adjustment to loc_x argument in Calc_…

Pull Request - State: closed - Opened by merrillrudd over 4 years ago - 1 comment

#47 - Development

Pull Request - State: closed - Opened by James-Thorson-NOAA over 4 years ago

#46 - Fix NEUS EPUs on dev branch

Pull Request - State: closed - Opened by slarge over 4 years ago - 1 comment

#45 - Fix NEUS EPUs

Pull Request - State: closed - Opened by slarge over 4 years ago

#44 - plot.fit_model() help is incorrect and other issues

Issue - State: open - Opened by John-R-Wallace-NOAA over 4 years ago

#43 - Replace calls to "plot_lines" with calls to "plot_timeseries" wherever needed

Issue - State: open - Opened by agruss2 almost 5 years ago

#42 - small type fix in summarize_covariance

Pull Request - State: closed - Opened by pdolder almost 5 years ago

#41 - Update plotmaps dox

Pull Request - State: closed - Opened by mkapur almost 5 years ago

#40 - Northwest Atlantic - subset EPUs

Pull Request - State: closed - Opened by slarge almost 5 years ago - 2 comments

#39 - Merging development branch

Pull Request - State: closed - Opened by James-Thorson-NOAA almost 5 years ago

#38 - make_covariates drops values

Issue - State: closed - Opened by cstawitz almost 5 years ago - 8 comments

#37 - Misnamed covariate column

Issue - State: open - Opened by cstawitz almost 5 years ago - 2 comments

#36 - Implementation of fine_scale option in make_map_info

Issue - State: closed - Opened by embiuw almost 5 years ago - 3 comments

#35 - Error in make_covariates

Issue - State: closed - Opened by N-DucharmeBarth almost 5 years ago - 1 comment

#34 - Add example data set for combining acoustic and bottom trawl data

Pull Request - State: closed - Opened by colemonnahan almost 5 years ago

#33 - Corrected for the error in the "calculate_proportion" function

Pull Request - State: closed - Opened by agruss2 almost 5 years ago

#32 - Adding example...

Pull Request - State: closed - Opened by James-Thorson-NOAA almost 5 years ago

#31 - Updated calculate_proportion.R

Pull Request - State: closed - Opened by agruss2 almost 5 years ago - 1 comment

#30 - Corrected for a typo in calculate_proportion.R

Pull Request - State: closed - Opened by agruss2 almost 5 years ago - 1 comment

#29 - Updated calculate_proportion.R and load_example.R, and created PESC_example_red_grouper.rda

Pull Request - State: closed - Opened by agruss2 almost 5 years ago - 1 comment

#28 - Updated calculate_proportion.R and load_example.R, and created PESC_example_red_grouper.rda

Pull Request - State: closed - Opened by agruss2 almost 5 years ago - 2 comments

#27 - Fix bug...

Pull Request - State: closed - Opened by James-Thorson-NOAA about 5 years ago

#26 - Fix bug in mesh creation when knot_method is grid and finescale is true

Pull Request - State: closed - Opened by colemonnahan about 5 years ago

#25 - Mesh creation

Issue - State: open - Opened by GiancarloMCorrea about 5 years ago

#24 - Fix another bug in make_covariates(.) ...

Pull Request - State: closed - Opened by James-Thorson-NOAA about 5 years ago

#23 - Bug in plot_biomass_index when using combined model

Issue - State: closed - Opened by colemonnahan about 5 years ago - 2 comments

#22 - Development

Pull Request - State: closed - Opened by James-Thorson-NOAA about 5 years ago

#21 - devtools installation fails

Issue - State: closed - Opened by Jason-Conner-NOAA about 5 years ago - 5 comments

#20 - Improve plots and interface

Pull Request - State: closed - Opened by James-Thorson-NOAA about 5 years ago

#19 - summarize_covariance returns errors

Issue - State: open - Opened by N-DucharmeBarth about 5 years ago - 1 comment

#18 - Suggested changes in calculate_proportion

Issue - State: closed - Opened by agruss2 over 5 years ago - 1 comment

#17 - Changes recently introduced in make_spatial_info in the development branch are computationally intensive

Issue - State: closed - Opened by agruss2 over 5 years ago - 2 comments

#16 - Adding S3 objects

Pull Request - State: closed - Opened by James-Thorson-NOAA over 5 years ago

#15 - Problems to plot the legend with plot_results/plot maps

Issue - State: open - Opened by aastarloa over 5 years ago - 1 comment

#14 - plot_residuals function returns error with VAST single species example

Issue - State: open - Opened by dshanisko over 5 years ago - 4 comments

#13 - Add stream-network features

Pull Request - State: closed - Opened by James-Thorson over 5 years ago

#12 - make_spatial_info return list is incomplete

Issue - State: open - Opened by ChristineStawitz-NOAA over 5 years ago - 1 comment

#11 - fix: Years2Include was not being passed to PlotMap_Fn

Pull Request - State: closed - Opened by kellijohnson-NOAA over 5 years ago - 2 comments

#10 - Region="other" in make_extrapolation_info

Issue - State: closed - Opened by aastarloa over 5 years ago - 4 comments

#9 - Adding features for `fine_scale=TRUE`

Pull Request - State: closed - Opened by James-Thorson over 5 years ago

#8 - new zealand waitaki catchment longfin eel data - downstream segemnts …

Pull Request - State: closed - Opened by merrillrudd over 5 years ago

#7 - Development

Pull Request - State: closed - Opened by James-Thorson over 5 years ago

#6 - Take out detach statements for maps and mapdata

Pull Request - State: closed - Opened by colemonnahan over 5 years ago - 1 comment

#5 - please delete summary_nwfsc from NAMESPACE

Issue - State: closed - Opened by BradHubley almost 6 years ago - 1 comment

#4 - multiple regions in make_extrapolation_info

Issue - State: closed - Opened by mkapur almost 6 years ago - 2 comments

#3 - Fix bug in summary_nwfsc with Poisson-Link

Pull Request - State: closed - Opened by kellijohnson-NOAA about 6 years ago - 1 comment

#2 - Required packages 'pander' and 'formatR' are not installed if missing

Issue - State: closed - Opened by John-R-Wallace-NOAA over 6 years ago - 1 comment

#1 - Issues with `Calc_Kmeans`

Issue - State: closed - Opened by kellijohnson-NOAA over 6 years ago - 4 comments

GitHub / james-thorson-noaa/fishstatsutils issues and pull requests