Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jackh726/bigtools issues and pull requests

#65 - Help maturin recognize mixed rust-python project

Pull Request - State: closed - Opened by nvictus 2 days ago - 1 comment

#64 - pip install pybigtools leads to BBIReadError (but conda works)

Issue - State: open - Opened by LukasMahieu 5 days ago - 1 comment

#62 - pybigwig's values() not reading outside chromosome

Issue - State: open - Opened by casblaauw 16 days ago - 1 comment

#61 - Select position range in BigWig

Issue - State: open - Opened by multimeric 17 days ago - 2 comments

#60 - Make certain fields public within BigWigMerge structs

Pull Request - State: closed - Opened by donaldcampbelljr 17 days ago - 1 comment

#59 - Access bigwigmerge from other crates

Issue - State: open - Opened by donaldcampbelljr 17 days ago - 4 comments

#58 - Add `--clip` argument to `bedgraphtobigwig`

Pull Request - State: open - Opened by nleroy917 18 days ago - 1 comment

#57 - pybigtools should allow setting autosql

Issue - State: open - Opened by jackh726 25 days ago

#56 - `bigtools bedgraphtobigwig` -- add option to skip invalid chromosomes

Issue - State: open - Opened by nleroy917 about 1 month ago - 6 comments

#55 - Issue with resulting .bigwig file and IGV

Issue - State: closed - Opened by maxgmarin about 1 month ago - 4 comments

#54 - pybigtools bigbed write appears to store chrom as "rest"

Issue - State: closed - Opened by nvictus about 1 month ago - 3 comments

#52 - Allow renaming chromosome names in bigWig/bigBed files.

Issue - State: open - Opened by ghuls about 2 months ago

#51 - installing pybigtools fails due to inability to compile ring v0.17.8

Issue - State: open - Opened by dmalzl about 2 months ago - 2 comments

#50 - Support for bigbed

Issue - State: closed - Opened by pkerpedjiev 4 months ago - 2 comments

#49 - bedToBigBed allow1bpOverlap

Issue - State: closed - Opened by mrvollger 4 months ago - 1 comment

#48 - Missing fields when using `-a` with bedtobigbed

Issue - State: open - Opened by mrvollger 4 months ago - 35 comments

#47 - Granularize api tests

Pull Request - State: closed - Opened by nvictus 5 months ago

#46 - Add bb test files

Pull Request - State: closed - Opened by nvictus 5 months ago - 3 comments

#45 - Refactor bigtools internals and API for writing

Pull Request - State: closed - Opened by jackh726 5 months ago - 1 comment

#44 - Refactor pybigtools API

Pull Request - State: closed - Opened by jackh726 5 months ago

#43 - pybigtools: NumPy 2.0

Issue - State: open - Opened by nvictus 6 months ago - 3 comments

#42 - Add more bigwigaverageoverbed stats

Pull Request - State: closed - Opened by ghuls 6 months ago - 19 comments

#41 - Fix behaviour of names argument in bigWigAverageOverBed of pybigtools.

Pull Request - State: closed - Opened by ghuls 6 months ago - 1 comment

#40 - Update citation

Pull Request - State: closed - Opened by nvictus 6 months ago

#39 - Support specifying bed(Graph) input files as .gz

Issue - State: open - Opened by jackh726 6 months ago - 4 comments

#38 - Implement `-minMax` option of bigWigAverageOverBed.

Issue - State: closed - Opened by ghuls 7 months ago - 3 comments

#37 - build: Add .cargo/config for project root `cargo build` on macos

Pull Request - State: closed - Opened by nvictus 7 months ago

#36 - Specialized Python exceptions

Pull Request - State: closed - Opened by nvictus 8 months ago

#35 - Make `is_bigwig`, `is_bigbed` properties

Pull Request - State: closed - Opened by nvictus 8 months ago

#35 - Make `is_bigwig`, `is_bigbed` properties

Pull Request - State: closed - Opened by nvictus 8 months ago

#34 - Enhancements to Python writer API

Issue - State: open - Opened by nvictus 9 months ago

#34 - Enhancements to Python writer API

Issue - State: open - Opened by nvictus 9 months ago

#33 - Enhancements to Python reader API

Issue - State: closed - Opened by nvictus 9 months ago

#32 - Add "__version__" package attribute

Pull Request - State: closed - Opened by ghuls 9 months ago - 1 comment

#32 - Add "__version__" package attribute

Pull Request - State: closed - Opened by ghuls 9 months ago - 1 comment

#32 - Add "__version__" package attribute

Pull Request - State: closed - Opened by ghuls 9 months ago - 1 comment

#31 - Update README.md

Pull Request - State: closed - Opened by nvictus 9 months ago

#31 - Update README.md

Pull Request - State: closed - Opened by nvictus 9 months ago

#30 - Patch bump

Pull Request - State: closed - Opened by nvictus 9 months ago

#30 - Patch bump

Pull Request - State: closed - Opened by nvictus 9 months ago

#30 - Patch bump

Pull Request - State: closed - Opened by nvictus 9 months ago

#29 - Change build steps

Pull Request - State: closed - Opened by nvictus 9 months ago

#29 - Change build steps

Pull Request - State: closed - Opened by nvictus 9 months ago

#29 - Change build steps

Pull Request - State: closed - Opened by nvictus 9 months ago

#28 - minor pybigtools complaints

Issue - State: closed - Opened by sergpolly 9 months ago - 2 comments

#28 - minor pybigtools complaints

Issue - State: closed - Opened by sergpolly 9 months ago - 2 comments

#28 - minor pybigtools complaints

Issue - State: closed - Opened by sergpolly 9 months ago - 2 comments

#27 - pybigwig regression writing bigwigs in >=0.1.1

Issue - State: closed - Opened by sergpolly 9 months ago - 3 comments

#27 - pybigwig regression writing bigwigs in >=0.1.1

Issue - State: closed - Opened by sergpolly 9 months ago - 3 comments

#26 - Bump pybigtools for packaging fix

Pull Request - State: closed - Opened by nvictus 9 months ago

#26 - Bump pybigtools for packaging fix

Pull Request - State: closed - Opened by nvictus 9 months ago

#26 - Bump pybigtools for packaging fix

Pull Request - State: closed - Opened by nvictus 9 months ago

#26 - Bump pybigtools for packaging fix

Pull Request - State: closed - Opened by nvictus 9 months ago

#25 - Make sure license file is bundled with sdist

Pull Request - State: closed - Opened by nvictus 9 months ago

#24 - Add CITATION.cff

Pull Request - State: closed - Opened by nvictus 10 months ago

#23 - Update README.md

Pull Request - State: closed - Opened by nvictus 10 months ago

#22 - Fix "read" feature.

Pull Request - State: closed - Opened by ghuls 10 months ago - 1 comment

#21 - Add Zenodo badge

Pull Request - State: closed - Opened by nvictus 10 months ago

#20 - Switch to rustls for attohttpc

Pull Request - State: closed - Opened by anderspitman 10 months ago - 2 comments

#19 - Avoiding OpenSSL

Issue - State: closed - Opened by anderspitman 10 months ago - 2 comments

#18 - bigtools bigwigtobedgraph hangs for certain bigwig file created with pyBigWig

Issue - State: closed - Opened by ghuls 10 months ago - 3 comments

#17 - Move cancellation check to `build.commands`

Pull Request - State: closed - Opened by nvictus 10 months ago - 1 comment

#16 - Fix typo

Pull Request - State: closed - Opened by nvictus 10 months ago

#15 - Add logo

Pull Request - State: closed - Opened by nvictus 10 months ago

#14 - Readthedocs configuration

Pull Request - State: closed - Opened by nvictus 10 months ago - 4 comments

#13 - Conditional python release workflow

Pull Request - State: closed - Opened by nvictus 10 months ago

#12 - Fix bigwigmerge.

Pull Request - State: closed - Opened by ghuls about 1 year ago - 1 comment

#10 - BED file with only 3 columns is not supported by bigwigaverageoverbed

Issue - State: closed - Opened by ghuls about 1 year ago - 1 comment

#9 - Different chromosome order with bigwigtobedgraph than with UCSC bigWigToBedGraph

Issue - State: closed - Opened by ghuls about 1 year ago - 1 comment

#5 - Bump openssl from 0.10.52 to 0.10.55

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#4 - Example of writing a bigbed

Issue - State: closed - Opened by mrvollger over 1 year ago - 2 comments

#3 - Fix bytes read in get_zoom_block_values

Pull Request - State: closed - Opened by pkerpedjiev over 1 year ago

#2 - "range end index 4 out of range for slice of length 3"

Issue - State: closed - Opened by jackh726 over 3 years ago - 1 comment

#1 - make reqwests blocking for RemoteFile

Pull Request - State: closed - Opened by paul-sud almost 5 years ago - 3 comments