Ecosyste.ms: Issues

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GitHub / j-andrews7/eclipse issues and pull requests

#26 - Implement stitch distance optimization

Issue - State: open - Opened by j-andrews7 17 days ago - 1 comment

#26 - Implement stitch distance optimization

Issue - State: open - Opened by j-andrews7 17 days ago - 1 comment

#25 - Add force parameter to run_rose function

Pull Request - State: closed - Opened by j-andrews7 18 days ago

#25 - Add force parameter to run_rose function

Pull Request - State: closed - Opened by j-andrews7 18 days ago

#24 - width normalization

Pull Request - State: closed - Opened by j-andrews7 18 days ago

#24 - width normalization

Pull Request - State: closed - Opened by j-andrews7 18 days ago

#22 - Add new thresholding methods

Pull Request - State: closed - Opened by j-andrews7 about 1 month ago

#22 - Add new thresholding methods

Pull Request - State: closed - Opened by j-andrews7 about 1 month ago

#21 - Add group-wise calling

Issue - State: open - Opened by j-andrews7 about 1 month ago - 2 comments

#21 - Add group-wise calling

Issue - State: open - Opened by j-andrews7 about 1 month ago - 2 comments

#20 - Add new thresholding approaches

Issue - State: closed - Opened by j-andrews7 about 1 month ago - 1 comment

#20 - Add new thresholding approaches

Issue - State: closed - Opened by j-andrews7 about 1 month ago - 1 comment

#18 - Functional implementation

Pull Request - State: closed - Opened by j-andrews7 about 2 months ago

#18 - Functional implementation

Pull Request - State: closed - Opened by j-andrews7 about 2 months ago

#17 - Add option to drop negative signal regions

Pull Request - State: closed - Opened by j-andrews7 about 2 months ago

#17 - Add option to drop negative signal regions

Pull Request - State: closed - Opened by j-andrews7 about 2 months ago

#16 - Support for GRanges as input

Pull Request - State: closed - Opened by j-andrews7 about 2 months ago

#16 - Support for GRanges as input

Pull Request - State: closed - Opened by j-andrews7 about 2 months ago

#14 - Use consistuent element size for width scaling

Issue - State: closed - Opened by j-andrews7 about 2 months ago

#14 - Use consistuent element size for width scaling

Issue - State: closed - Opened by j-andrews7 about 2 months ago

#13 - Add option to drop negative signal regions

Issue - State: closed - Opened by j-andrews7 about 2 months ago - 1 comment

#13 - Add option to drop negative signal regions

Issue - State: closed - Opened by j-andrews7 about 2 months ago - 1 comment

#12 - Annotation functionality

Pull Request - State: closed - Opened by nbpeterson3 3 months ago

#12 - Annotation functionality

Pull Request - State: closed - Opened by nbpeterson3 3 months ago

#11 - Error when dropping peaks in chrY

Issue - State: closed - Opened by nbpeterson3 3 months ago - 1 comment

#11 - Error when dropping peaks in chrY

Issue - State: closed - Opened by nbpeterson3 3 months ago - 1 comment

#10 - Import setter function 'ranges<-' from GenomicRanges.

Pull Request - State: closed - Opened by nbpeterson3 4 months ago

#10 - Import setter function 'ranges<-' from GenomicRanges.

Pull Request - State: closed - Opened by nbpeterson3 4 months ago

#9 - Fix for Issue 8 - Add catch for no BAM index

Pull Request - State: closed - Opened by nbpeterson3 4 months ago - 2 comments

#9 - Fix for Issue 8 - Add catch for no BAM index

Pull Request - State: closed - Opened by nbpeterson3 4 months ago - 2 comments

#8 - Add catch for no BAM index

Issue - State: closed - Opened by j-andrews7 4 months ago

#7 - Double check imports / DESCRIPTION

Issue - State: closed - Opened by j-andrews7 4 months ago - 1 comment

#6 - Accept BigWig files or GRanges as inputs.

Issue - State: closed - Opened by j-andrews7 4 months ago - 1 comment

#5 - Add enhancer annotation parameters.

Issue - State: closed - Opened by j-andrews7 4 months ago - 3 comments

#4 - Add Shiny app function

Issue - State: open - Opened by j-andrews7 4 months ago

#3 - Add viz function for snapshots

Issue - State: open - Opened by j-andrews7 4 months ago

#2 - Add differential analysis functions

Issue - State: open - Opened by j-andrews7 4 months ago

#1 - Implement stitching/unstitching process

Issue - State: closed - Opened by j-andrews7 4 months ago - 1 comment