Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ivadomed/ivadomed issues and pull requests
#1179 - Remove deprecated torch and dev installation instructions
Pull Request -
State: closed - Opened by mathieuboudreau over 2 years ago
- 13 comments
Labels: documentation, installation
#1175 - Integrate static type checking with mypy workflow
Pull Request -
State: open - Opened by kanishk16 over 2 years ago
- 1 comment
Labels: CI
#1164 - `PatchFilter` for 3D subvolume filtering
Pull Request -
State: closed - Opened by uzaymacar over 2 years ago
- 4 comments
Labels: feature, Ready for review, priority:high
#1163 - `patch_filter_params` for 3D to remove empty subvolumes
Issue -
State: closed - Opened by uzaymacar over 2 years ago
Labels: feature
#1162 - Type Hint for utils.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1161 - Type Hint for slice_filter.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1160 - Type Hint for segmentation_pair.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1159 - Type Hint for sample_meta_data.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1158 - Type Hint for patch_filter.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1157 - Type Hint for mri3d_subvolume_segmentation_dataset.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1156 - Type Hint for mri2d_segmentation_dataset.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1155 - type hinting for bids_dataset.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1154 - Type Hint for bids_dataframe.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1153 - Type Hint for bids3d_dataset
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1152 - Type Hinting for balanced_sampler.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1151 - Typehint for loader/film.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1150 - Type Hinting for loader.py
Pull Request -
State: closed - Opened by cakester over 2 years ago
- 1 comment
Labels: refactoring
#1137 - Support python3.10
Pull Request -
State: closed - Opened by kousu over 2 years ago
- 10 comments
Labels: enhancement, dependencies, installation, priority:medium
#1125 - docs: unify installation
Pull Request -
State: open - Opened by kanishk16 almost 3 years ago
- 19 comments
Labels: documentation, priority:high
#1124 - wandb sweeps integration for hyperparameter optimization
Issue -
State: open - Opened by kiristern almost 3 years ago
- 12 comments
Labels: enhancement, priority:high, wandb
#1107 - Fix loading of TIF 16bits grayscale files
Pull Request -
State: closed - Opened by mariehbourget almost 3 years ago
- 3 comments
Labels: bug
#1081 - Fix long evaluation time on microscopy images
Pull Request -
State: closed - Opened by mariehbourget almost 3 years ago
- 2 comments
Labels: bug
#1022 - Reasons for `multiple of length plus 2 * padding and a multiple of 16` condition for inputs
Issue -
State: open - Opened by uzaymacar about 3 years ago
- 4 comments
Labels: question, priority:high
#1002 - Is there a CLI for segmenting a single image?
Issue -
State: open - Opened by jcohenadad about 3 years ago
- 4 comments
Labels: priority:high
#1001 - Unclear what the difference is between `--segment` and `--test`
Issue -
State: open - Opened by jcohenadad about 3 years ago
- 5 comments
Labels: documentation
#945 - Add rec- files from dwi folder
Pull Request -
State: closed - Opened by cakester over 3 years ago
- 4 comments
Labels: imaging
#911 - Dice loss modified to eliminate the batch size affects (issue #910)
Pull Request -
State: open - Opened by gbazad93 over 3 years ago
- 18 comments
#860 - BIDS derived datasets file naming
Issue -
State: open - Opened by mariehbourget over 3 years ago
- 27 comments
Labels: help wanted, card:DESIGN_DISCUSSION
#852 - Intervertebral disc labeling using pose estimation
Pull Request -
State: closed - Opened by joshuacwnewton over 3 years ago
- 9 comments
Labels: feature, ivadomed
#738 - Refactoring: reduce complexity of BIDStoHDF5 __init__
Pull Request -
State: closed - Opened by gisellemartel almost 4 years ago
- 1 comment
Labels: refactoring
#736 - Refactor `create_df` in DataFrame class to reduce complexity
Pull Request -
State: closed - Opened by gisellemartel almost 4 years ago
- 1 comment
Labels: refactoring
#734 - New loader: Load PNG/TIF/JPG microscopy files as numpy array
Pull Request -
State: closed - Opened by mariehbourget almost 4 years ago
- 5 comments
Labels: feature
#725 - New loader: Update test_loader.py
Pull Request -
State: closed - Opened by mariehbourget almost 4 years ago
- 6 comments
Labels: testing
#721 - New loader: add support for CT-scan files
Pull Request -
State: closed - Opened by mariehbourget almost 4 years ago
- 2 comments
Labels: feature
#714 - Copy nibabel header when creating output prediction
Pull Request -
State: closed - Opened by jcohenadad almost 4 years ago
- 9 comments
Labels: bug
#689 - Release 2.7.2
Pull Request -
State: closed - Opened by andreanne-lemay almost 4 years ago
- 1 comment
#688 - Multiclass ignored during inference if n_input and n_output are different
Pull Request -
State: closed - Opened by charleygros almost 4 years ago
- 2 comments
Labels: bug
#687 - New loader: input from multiple BIDS datasets
Pull Request -
State: closed - Opened by mariehbourget almost 4 years ago
- 1 comment
Labels: enhancement
#683 - Add DOI JOSS
Pull Request -
State: closed - Opened by charleygros almost 4 years ago
- 3 comments
Labels: documentation
#682 - Add pre-commit hooks to limit file size to 500KB
Pull Request -
State: closed - Opened by gisellemartel almost 4 years ago
- 1 comment
Labels: enhancement, CI, priority:medium
#681 - Make change_keys method from ConfigurationManager compatible with python3.8
Pull Request -
State: closed - Opened by andreanne-lemay almost 4 years ago
- 3 comments
Labels: bug
#679 - Shared weights for the two first FiLM generator layers
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 2 comments
Labels: enhancement
#664 - Fix structure wise uncertainty computation
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 3 comments
Labels: bug
#663 - Store FiLM parameters during testing instead of training
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 2 comments
Labels: enhancement
#661 - Allow for non-dictionary hyperparameters in automate_training
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 3 comments
Labels: enhancement
#659 - Multimodal segmentation tasks with non-coregistered data
Issue -
State: open - Opened by jcohenadad about 4 years ago
- 7 comments
Labels: Good intership project
#656 - Remove PyTorch requirement in documentation
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 1 comment
Labels: installation
#652 - Externalize command, log_directory, and bids_path fields from JSON config files to CLI
Pull Request -
State: closed - Opened by gisellemartel about 4 years ago
- 5 comments
Labels: enhancement, card:DESIGN_DISCUSSION
#650 - Reformat configuration_file.rst for docs
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 6 comments
Labels: documentation, refactoring
#648 - New loader: BidsDataframe class
Pull Request -
State: closed - Opened by mariehbourget about 4 years ago
- 4 comments
Labels: enhancement, refactoring
#647 - Add functional test for automate_training run_test flag
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 2 comments
Labels: testing
#646 - Fix bugs in plot film params
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 3 comments
Labels: bug
#644 - Standardize the gpu ID argument
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 4 comments
Labels: refactoring
#642 - Fix store film params
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 1 comment
Labels: bug
#641 - Add metavar to parser
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 4 comments
Labels: documentation
#640 - Test GH actions automate training
Pull Request -
State: closed - Opened by olix86 about 4 years ago
- 1 comment
Labels: draft
#639 - version_info.log added in the log directory
Pull Request -
State: closed - Opened by mpompolas about 4 years ago
- 1 comment
Labels: enhancement
#638 - Add test template files
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 1 comment
Labels: testing
#631 - Remove the testing_data folder from ivadomed
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 3 comments
Labels: testing
#628 - Bug in Coveralls release 3.0.0
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 3 comments
Labels: testing
#626 - Add a README for the Sphinx docs
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 9 comments
Labels: documentation
#625 - Add documentation on packaged model format
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 8 comments
Labels: documentation
#624 - soft_gt param: only active after Data Augmentation
Pull Request -
State: closed - Opened by charleygros about 4 years ago
- 2 comments
Labels: bug
#623 - AnimatedGIf import and documentation
Pull Request -
State: closed - Opened by charleygros about 4 years ago
- 3 comments
Labels: bug
#621 - Add explanation for Windows incompatibility in installation docs #2
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 1 comment
Labels: installation
#620 - Revert pull request #605 (Windows incompatibility)
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 1 comment
Labels: installation
#619 - Add new custom css rule for table in purpose section (#617)
Pull Request -
State: closed - Opened by gisellemartel about 4 years ago
- 9 comments
Labels: documentation
#618 - Add DeepReg to comparison table
Pull Request -
State: closed - Opened by charleygros about 4 years ago
- 1 comment
Labels: documentation
#616 - Update PyTorch Ref
Pull Request -
State: closed - Opened by charleygros about 4 years ago
- 1 comment
Labels: documentation
#612 - Clarified doc on config file and fixed few typos/formatting issues
Pull Request -
State: closed - Opened by jcohenadad about 4 years ago
- 4 comments
Labels: card:DESIGN_DISCUSSION, documentation
#610 - Small clarifications and typos fixes in the Unet tutorial
Pull Request -
State: closed - Opened by jcohenadad about 4 years ago
- 1 comment
Labels: documentation
#609 - Indicate folder created after running ivadomed_download_data
Pull Request -
State: closed - Opened by Kcpf about 4 years ago
- 1 comment
Labels: enhancement
#607 - Added warning on installation to make sure proper Python version is installed
Pull Request -
State: closed - Opened by jcohenadad about 4 years ago
- 1 comment
Labels: documentation
#605 - Add explanation for Windows incompatibility in installation docs
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 3 comments
Labels: enhancement
#602 - Make sure test_HeMIS runs tests in order
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 1 comment
Labels: bug
#597 - Made the BIDS example more general for the audience
Pull Request -
State: closed - Opened by jcohenadad about 4 years ago
- 3 comments
Labels: documentation
#594 - Add new filter to SliceFilter class
Pull Request -
State: closed - Opened by leandervaneekelen about 4 years ago
- 3 comments
Labels: enhancement
#591 - New loader: Adapt splitting methods
Pull Request -
State: closed - Opened by mariehbourget about 4 years ago
- 4 comments
Labels: enhancement
#588 - Enable the pipeline to run with inputs from multiple BIDS datasets
Pull Request -
State: closed - Opened by mpompolas about 4 years ago
- 5 comments
Labels: feature
#585 - Refactor some of the code in main.py
Pull Request -
State: open - Opened by ahill187 about 4 years ago
- 1 comment
Labels: refactoring
#580 - Add functional tests for CLI
Pull Request -
State: closed - Opened by ahill187 about 4 years ago
- 3 comments
Labels: enhancement
#572 - visualization of multiple evaluation models
Pull Request -
State: closed - Opened by mpompolas about 4 years ago
- 9 comments
Labels: enhancement
#570 - Remove small for multiclass
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 1 comment
Labels: enhancement
#569 - Save config file before training
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 1 comment
Labels: enhancement
#567 - Transpose csv to facilitate reading
Pull Request -
State: closed - Opened by lrouhier about 4 years ago
- 13 comments
#566 - Add github action badge
Pull Request -
State: closed - Opened by lrouhier about 4 years ago
- 2 comments
#565 - Add issue/PR templates + root-level community guidelines
Pull Request -
State: closed - Opened by joshuacwnewton about 4 years ago
- 1 comment
Labels: documentation
#562 - Removing support for Python 3.9 (for now)
Pull Request -
State: closed - Opened by lrouhier about 4 years ago
- 2 comments
Labels: documentation
#561 - Add installation instructions in README
Pull Request -
State: closed - Opened by charleygros about 4 years ago
- 2 comments
#560 - Updating comparison table after review
Pull Request -
State: closed - Opened by lrouhier about 4 years ago
- 2 comments
Labels: documentation
#552 - Implemented attention Unet
Pull Request -
State: closed - Opened by AshkanTaghipour about 4 years ago
- 4 comments
Labels: deep learning
#551 - Implementation of max pooling
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 3 comments
#549 - Apply bounding box safety factor in segment volume
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 1 comment
Labels: enhancement
#546 - Random sampling of expert annotations
Pull Request -
State: closed - Opened by charleygros about 4 years ago
- 4 comments
Labels: enhancement
#544 - Multichannel support for convert_to_onnx script
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 1 comment
Labels: enhancement
#543 - Multichannel for convert_to_onnx script
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 1 comment
#542 - fix lfdr
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 6 comments
#541 - Fix HeMIS related bugs
Pull Request -
State: open - Opened by andreanne-lemay about 4 years ago
- 4 comments
Labels: bug
#538 - New loader: generate dataframe
Pull Request -
State: closed - Opened by mariehbourget about 4 years ago
- 5 comments
Labels: enhancement
#537 - Split_dataset: consider center_list when per_patient is used
Pull Request -
State: closed - Opened by andreanne-lemay about 4 years ago
- 1 comment
Labels: bug