ismms-himc/clustergrammer2 issues and pull requests

#124 - how to use clustergrammer2 with "dash" for my web app

Issue - State: open - Opened by jessielyons over 1 year ago - 4 comments

#123 - Bump flat and mocha

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#122 - Bump json5, source-map-loader, ts-loader, webpack and webpack-cli

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#121 - Bump qs and body-parser

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#120 - Bump decode-uri-component from 0.2.0 to 0.2.2

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#119 - Bump loader-utils

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#118 - Bump loader-utils

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, javascript

#117 - KeyError "Y" axis not found on net.cluster with run_clustering=False

Issue - State: open - Opened by antoinegaston about 2 years ago

#116 - Missing value in the input matrix

Issue - State: open - Opened by anlin00007 about 2 years ago - 3 comments

#115 - Bump terser from 4.6.3 to 4.8.1

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, javascript

#114 - Bump moment from 2.24.0 to 2.29.4

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, javascript

#113 - Bump shell-quote from 1.6.1 to 1.7.3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies, javascript

#112 - Bump numpy from 1.19.5 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies, python

#111 - Bug: Use of distance metrics when clustering

Issue - State: open - Opened by ltsypin over 2 years ago - 1 comment

#110 - Category colors not rendering properly

Issue - State: open - Opened by ltsypin over 2 years ago - 1 comment

#109 - Bump async from 1.5.2 to 2.6.4

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#108 - Bump moment from 2.24.0 to 2.29.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#107 - Bump karma from 5.0.7 to 6.3.16

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#106 - Bump url-parse from 1.4.3 to 1.4.7

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#105 - Bump ajv from 6.5.4 to 6.12.6

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#104 - Bump karma from 5.0.7 to 6.3.14

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#103 - Bump node-fetch from 2.6.0 to 2.6.7

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#102 - Export Clustergrammer2 WebGL to vector image

Issue - State: open - Opened by cornhundred almost 3 years ago

#101 - Bump tar from 4.4.6 to 4.4.19

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#100 - Bump path-parse from 1.0.6 to 1.0.7

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#99 - Bump tar from 4.4.6 to 4.4.15

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#98 - Clustergrammer2 error: 'DataFrame' object has no attribute 'ix'

Issue - State: open - Opened by zzzbobml about 3 years ago - 2 comments

#97 - unable saving interactive heatmap plot in to html file

Issue - State: open - Opened by TalWac about 3 years ago - 10 comments

#96 - Bump debug from 0.7.4 to 2.6.9

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#95 - Bump braces from 0.1.5 to 2.3.2

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#94 - Bump hosted-git-info from 2.7.1 to 2.8.9

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#93 - Bump lodash from 4.17.15 to 4.17.21

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#92 - Bump ssri from 5.3.0 to 6.0.2

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#91 - Bump elliptic from 6.4.1 to 6.5.4

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#90 - @cornhundred I‘ve figured this out. It seems my dataframe is having index of dtype "Int64" and can't be rendered by Clustergrammer2 properly. I changed to normal python object dtype and it works. But I believe this should not be the expected behavior so probably there's a bug behind it that you may want to fix

Issue - State: open - Opened by cornhundred over 3 years ago

#86 - Bump ini from 1.3.5 to 1.3.8

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#85 - Bump ini from 1.3.5 to 1.3.7

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#84 - Legend for Clustergrammer JS doesnt get updated on Defining Custom Tile Colors

Issue - State: closed - Opened by mayankmusaddi almost 4 years ago - 2 comments

#83 - Unable to set any other color other than white to denote a 0 value in a heatmap

Issue - State: closed - Opened by mayankmusaddi almost 4 years ago - 2 comments

#82 - Widget not displayed in Jupyter Lab

Issue - State: closed - Opened by mdmanurung about 4 years ago - 1 comment

#81 - Bump node-fetch from 2.6.0 to 2.6.1

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#80 - Bump yargs-parser from 10.1.0 to 13.1.2

Pull Request - State: open - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#79 - Bump http-proxy from 1.17.0 to 1.18.1

Pull Request - State: open - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#78 - Bump lodash from 4.17.15 to 4.17.20

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#77 - use .values

Issue - State: closed - Opened by cornhundred about 4 years ago - 1 comment

#76 - The search button touches or overlaps the download section of the widget

Issue - State: open - Opened by matrs about 4 years ago

#75 - Bump elliptic from 6.4.1 to 6.5.3

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#74 - Bump lodash from 4.17.15 to 4.17.19

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#73 - visualize larger matrices

Issue - State: open - Opened by cornhundred over 4 years ago - 1 comment

#72 - value based categories to string

Issue - State: closed - Opened by cornhundred over 4 years ago - 1 comment

#71 - Manual category updates

Issue - State: open - Opened by cornhundred over 4 years ago

#70 - kaggle static HTML is not wide enough

Issue - State: closed - Opened by cornhundred over 4 years ago - 1 comment

#69 - Bump acorn from 4.0.13 to 6.4.1

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#68 - increase recursion limit by default

Issue - State: open - Opened by cornhundred over 4 years ago

#67 - cell type category coloring conventions

Issue - State: open - Opened by cornhundred over 4 years ago

#66 - Preferred names for manual categories

Issue - State: closed - Opened by cornhundred over 4 years ago - 1 comment

#65 - Cleaning cats

Pull Request - State: open - Opened by cornhundred over 4 years ago

#64 - Bump jquery from 3.4.1 to 3.5.1

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#63 - Bump jquery from 3.4.1 to 3.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#62 - Question: Can I display custom mouse-over gene descriptions?

Issue - State: open - Opened by matrs over 4 years ago - 4 comments
Labels: enhancement

#61 - Clustergrammer2 0.5.18 not working with jupyterlab 2.0.1

Issue - State: closed - Opened by matrs over 4 years ago - 11 comments

#60 - NBA spatial data

Issue - State: closed - Opened by cornhundred over 4 years ago - 1 comment

#59 - Bump handlebars from 4.0.12 to 4.7.3

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#58 - Tableau extension

Issue - State: closed - Opened by cornhundred almost 5 years ago - 1 comment

#57 - Bump handlebars from 4.0.12 to 4.5.3

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 2 comments
Labels: dependencies

#56 - Clustergrammer2 Widget makes page unresponsive sometimes in Jupyter Lab

Issue - State: closed - Opened by cornhundred almost 5 years ago - 1 comment

#55 - Interactive Dendrogram Generated Sample Metadata

Issue - State: closed - Opened by cornhundred almost 5 years ago - 1 comment

#54 - Bump js-yaml from 3.12.0 to 3.13.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#53 - Bump handlebars from 4.0.12 to 4.5.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#52 - Bump mixin-deep from 1.3.1 to 1.3.2

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#51 - Bump lodash from 4.17.11 to 4.17.15

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#50 - Bump jquery from 3.3.1 to 3.4.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#49 - dendrogram slicing and linkage matrix

Issue - State: closed - Opened by cornhundred almost 5 years ago - 1 comment

#48 - Clustergrammer2 0.5.2 not working in Jupyter Lab (JLab)

Issue - State: closed - Opened by cornhundred almost 5 years ago - 2 comments
Labels: bug

#47 - deprecate up/down values for matrix

Issue - State: closed - Opened by cornhundred almost 5 years ago - 1 comment

#46 - deprecate additional pre-filtered views

Issue - State: closed - Opened by cornhundred almost 5 years ago - 1 comment

#44 - The widget is not responding well

Issue - State: closed - Opened by AviMaayan about 6 years ago - 1 comment
Labels: bug

#40 - make methods to save and load pre-clustered views

Issue - State: closed - Opened by cornhundred about 5 years ago - 1 comment

#39 - custom matrix tile color scheme

Issue - State: closed - Opened by cornhundred about 5 years ago - 9 comments
Labels: enhancement

#37 - not seeing selected rows/cols in input in dendrogram tooltip

Issue - State: closed - Opened by cornhundred about 5 years ago - 1 comment
Labels: bug

#36 - Fix .ix deprecation warning (switch to .iloc)

Issue - State: closed - Opened by cornhundred about 5 years ago - 2 comments

#34 - Improve API

Issue - State: open - Opened by cornhundred about 5 years ago
Labels: enhancement

#33 - make Clustergrammer2 conda installable

Issue - State: open - Opened by cornhundred about 5 years ago - 1 comment
Labels: enhancement

#26 - require? X clustergrammer2/extension

Issue - State: closed - Opened by brobr over 5 years ago - 12 comments

#25 - clean clustergrammer2 methods

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment

#24 - look into voila for making a Dashboard from Notebooks and Widgets

Issue - State: closed - Opened by cornhundred over 5 years ago - 3 comments
Labels: enhancement

#23 - add video tutorials to notebooks

Issue - State: closed - Opened by cornhundred over 5 years ago - 2 comments

#21 - Allow users to choose between SVG or WebGL front ends.

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment
Labels: enhancement

#20 - Save cell type similarity scores with value-based-category

Issue - State: open - Opened by cornhundred over 5 years ago
Labels: enhancement, help wanted

#19 - Row category based on highest cell-type category expression

Issue - State: open - Opened by cornhundred over 5 years ago
Labels: enhancement, help wanted

#17 - update pandas to 0.24.2 in requirements.txt

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment

#16 - Space button if spatial information is available for cells

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment
Labels: enhancement

#13 - precalc UMAP and add row/col reorder buttons

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment
Labels: enhancement, help wanted

#12 - Add Clustergrammer2 to awesome single cell list

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment

#11 - Improve Google Colab support

Issue - State: open - Opened by cornhundred over 5 years ago - 4 comments
Labels: enhancement

#10 - add local enrichment analysis and multi-library aggregation function

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment
Labels: enhancement

#6 - build category addition method

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment
Labels: enhancement

#3 - Error: similarity matrix for tuple-matrix in python

Issue - State: closed - Opened by cinaljess over 5 years ago - 2 comments
Labels: bug

#2 - allow more flexibility in the widget width

Issue - State: open - Opened by cornhundred over 5 years ago - 4 comments
Labels: enhancement

#1 - customized initial ordering of the heatmap

Issue - State: closed - Opened by cornhundred over 5 years ago - 1 comment
Labels: enhancement

GitHub / ismms-himc/clustergrammer2 issues and pull requests