Ecosyste.ms: Issues

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GitHub / isi-vista/vista-pegasus-wrapper issues and pull requests

#113 - Bump black from 19.3b0 to 24.3.0

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#112 - Update repo to use Python 3.7-3.8

Issue - State: open - Opened by lichtefeld almost 3 years ago

#111 - Update PEGASUS_HOME to new version

Pull Request - State: closed - Opened by lichtefeld almost 3 years ago - 1 comment

#110 - Saga Cluster: Update PEGASUS_HOME

Issue - State: closed - Opened by elizlee almost 3 years ago - 2 comments
Labels: bug, size-small

#109 - Add override SpackConfig to python job builder

Issue - State: open - Opened by lichtefeld about 3 years ago
Labels: enhancement

#108 - Release 0.5.0

Pull Request - State: closed - Opened by joecummings over 3 years ago - 1 comment

#106 - Include support for native backends (Mac OSX, Windows)

Issue - State: open - Opened by joecummings over 3 years ago
Labels: enhancement, priority-1-normal

#105 - Add support for Python venvs (similar to Conda)

Issue - State: open - Opened by lichtefeld over 3 years ago

#104 - Relax Setup Requirements & Fix a Bash Job Bug

Pull Request - State: closed - Opened by lichtefeld over 3 years ago - 1 comment

#102 - SAGA Cluster - ephemeral-lg defaults

Issue - State: open - Opened by lichtefeld over 3 years ago

#101 - New Functionality for Containers

Pull Request - State: closed - Opened by lichtefeld over 3 years ago - 1 comment

#100 - Update from PyPi Release for Version 0.3

Pull Request - State: closed - Opened by lichtefeld over 3 years ago - 1 comment

#99 - Fix Duplicate Job Execution Bug

Pull Request - State: closed - Opened by lichtefeld over 3 years ago - 1 comment

#98 - Conda script runs Python script twice

Issue - State: closed - Opened by spigo900 over 3 years ago - 2 comments
Labels: bug

#97 - Improved handling of docker images as a service during a workflow

Issue - State: closed - Opened by lichtefeld over 3 years ago
Labels: enhancement, size-medium, priority-0-high

#96 - add configuration note to readme

Pull Request - State: closed - Opened by elizlee over 3 years ago - 1 comment

#95 - Add more container capabilities

Pull Request - State: closed - Opened by elizlee over 3 years ago - 1 comment

#94 - Allow users to create arbitrary dependencies in workflow

Issue - State: open - Opened by joecummings almost 4 years ago - 4 comments
Labels: enhancement, help wanted, priority-2-low

#93 - Validate that locator does not contain an '='

Pull Request - State: closed - Opened by spigo900 almost 4 years ago - 2 comments

#92 - Job names should never contain =; warn users of this somehow

Issue - State: closed - Opened by spigo900 almost 4 years ago

#91 - False "jobs won't start" error message

Issue - State: closed - Opened by joecummings almost 4 years ago - 2 comments
Labels: bug

#90 - Version bump from release

Pull Request - State: closed - Opened by lichtefeld almost 4 years ago - 1 comment

#89 - Address upcoming service change for saga cluster job prioritization

Pull Request - State: closed - Opened by lichtefeld almost 4 years ago - 1 comment

#88 - Bump pyyaml from 5.3.1 to 5.4

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#87 - Add checkpoint file as checkpoint, remove --force option

Pull Request - State: open - Opened by joecummings almost 4 years ago - 2 comments

#86 - Multiply time by 60 to meet new 5.0.0 walltime format

Pull Request - State: closed - Opened by joecummings almost 4 years ago - 2 comments

#85 - Update SlurmResourceRequest unify method

Pull Request - State: closed - Opened by joecummings almost 4 years ago - 1 comment

#84 - Allow python script path and command-line args in job request

Pull Request - State: closed - Opened by lichtefeld almost 4 years ago - 3 comments

#83 - Should this wrapper support ISI's donut cluster?

Issue - State: closed - Opened by lichtefeld almost 4 years ago - 1 comment

#82 - Fix failure to stage-out checkpoint files

Pull Request - State: closed - Opened by lichtefeld almost 4 years ago - 1 comment

#81 - Determine how to automatically identify Partitions (e.g. gaia) max wall time dynamically

Issue - State: open - Opened by lichtefeld almost 4 years ago - 3 comments
Labels: enhancement, size-medium, priority-1-normal

#80 - Implement Python job on SLURM which takes command line arguments rather than a parameter file

Issue - State: closed - Opened by lichtefeld almost 4 years ago
Labels: enhancement, size-large, priority-0-high

#79 - Implement ability to run shell scripts on EVENT TRIGGERS in Pegasus

Issue - State: open - Opened by lichtefeld about 4 years ago
Labels: enhancement, size-medium, priority-1-normal

#78 - Document Category limits in read me & Sample Workflow Script

Pull Request - State: closed - Opened by lichtefeld about 4 years ago - 1 comment

#77 - Initial PyPi Release

Pull Request - State: closed - Opened by lichtefeld about 4 years ago - 1 comment

#76 - Add Support for jobs with Containers

Pull Request - State: closed - Opened by lichtefeld about 4 years ago - 1 comment

#75 - Add functionality to support docker containers

Issue - State: closed - Opened by lichtefeld about 4 years ago
Labels: enhancement, size-large, priority-1-normal

#74 - Add functionality for other backend services (besides SLURM)

Issue - State: open - Opened by joecummings about 4 years ago - 3 comments
Labels: enhancement, size-medium, priority-2-low

#73 - Update Wrapper to Support Pegasus 5.0.0

Pull Request - State: closed - Opened by lichtefeld about 4 years ago - 2 comments

#72 - Allow adding to pegasus 'properties.properties' file from params

Issue - State: open - Opened by lichtefeld about 4 years ago - 1 comment
Labels: enhancement, size-small, priority-1-normal

#70 - Fix max walltime

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#69 - Allow user to specify partition to run specific job on

Issue - State: closed - Opened by joecummings over 4 years ago - 2 comments
Labels: enhancement, priority-2-low

#68 - Allow Conda Job Script to Specify pypy3 rather than python

Pull Request - State: closed - Opened by lichtefeld over 4 years ago - 1 comment

#67 - SAGA cluster is going to start enforcing a new account type for Scavenge and Ephemeral Usage

Issue - State: closed - Opened by lichtefeld over 4 years ago - 4 comments
Labels: size-small, priority-0-high

#66 - Document HTCondor-related job name restrictions

Issue - State: open - Opened by spigo900 over 4 years ago
Labels: size-medium, priority-2-low

#65 - Fix nuke noop confirm

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#64 - Add validation for times partitions

Pull Request - State: closed - Opened by joecummings over 4 years ago - 3 comments

#62 - Fix `nuke` auto script

Issue - State: closed - Opened by joecummings over 4 years ago
Labels: bug

#61 - Optional nuke checkpoint if DAX creates NOOP

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#60 - Update example workflow builder tutorial

Issue - State: open - Opened by joecummings over 4 years ago - 2 comments
Labels: size-medium, priority-2-low

#59 - Allow setting job category in helper `run_python_on_parameters` function

Pull Request - State: closed - Opened by lichtefeld over 4 years ago - 1 comment

#57 - Update README.md

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#56 - Document ability to limit number of active jobs using categories.

Issue - State: closed - Opened by lichtefeld over 4 years ago - 1 comment
Labels: enhancement, priority-2-low

#55 - must_be_exhaustive param not being picked up by vistautils script

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#54 - Add experiment_name to job identifier; minor refactorings

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#53 - Update README.md

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#52 - Package for PyPi release

Issue - State: closed - Opened by joecummings over 4 years ago - 6 comments
Labels: priority-1-normal

#51 - Add API overview

Pull Request - State: closed - Opened by spigo900 over 4 years ago - 1 comment

#50 - Enable restricting jobs to specific compute nodes in SLURM cluster

Issue - State: closed - Opened by lichtefeld over 4 years ago - 11 comments
Labels: enhancement, size-small, priority-1-normal

#49 - option to exclude some nodes (i.e. the faulty nodes) from the computa…

Pull Request - State: closed - Opened by hassanzadeh over 4 years ago - 5 comments

#48 - Upgrade to 5.0.0dev API for making workflows

Issue - State: closed - Opened by lichtefeld over 4 years ago - 7 comments
Labels: size-large, priority-1-normal

#47 - Implement job throttling

Pull Request - State: closed - Opened by spigo900 over 4 years ago - 3 comments

#46 - Add error and debugging help to README

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#45 - Update default wall limit in sites.xml

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#44 - Add job time to unify Slurm request; change wall clock limit default

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#43 - Include job_time_in_minutes when unifying SLURM resource requests

Pull Request - State: closed - Opened by spigo900 over 4 years ago - 1 comment

#41 - Add debugging tricks from Slack to README

Issue - State: closed - Opened by joecummings over 4 years ago

#40 - Ensure exit code of a Python process is preserved even with output re…

Pull Request - State: closed - Opened by gabbard over 4 years ago - 1 comment

#39 - Add option to specify random seed when splitting corpus into even slices

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#38 - Join stdout and stderr before logging

Pull Request - State: closed - Opened by spigo900 over 4 years ago - 1 comment

#37 - Change default job time in minutes to 24 hours

Pull Request - State: closed - Opened by joecummings over 4 years ago - 1 comment

#36 - Fix for empty logs

Pull Request - State: closed - Opened by hassanzadeh over 4 years ago - 2 comments

#35 - A working multi stage example + other minor changes

Pull Request - State: closed - Opened by hassanzadeh over 4 years ago

#34 - A hopefully reproducible code for the issue with pegasus jobs

Pull Request - State: closed - Opened by hassanzadeh over 4 years ago - 1 comment

#33 - Singleton workflow builder

Pull Request - State: closed - Opened by gabbard over 4 years ago - 1 comment

#32 - Trigger pipeline support

Pull Request - State: closed - Opened by gabbard over 4 years ago - 1 comment

#31 - Pegasus Replica Catalog

Issue - State: closed - Opened by lichtefeld over 4 years ago - 2 comments

#30 - Make the checkpoint files be handled as Pegasus files.

Pull Request - State: closed - Opened by lichtefeld almost 5 years ago - 1 comment
Labels: help wanted

#28 - Update Module Documentation & Usage

Pull Request - State: closed - Opened by lichtefeld almost 5 years ago - 1 comment

#27 - Modify submit script generation tool to accept a relative directory argument

Issue - State: closed - Opened by lichtefeld almost 5 years ago - 2 comments

#26 - Write job logs to the experiment directory

Issue - State: closed - Opened by gabbard almost 5 years ago - 8 comments

#25 - Drop reliance on a local filesystem

Issue - State: open - Opened by gabbard almost 5 years ago
Labels: size-large, priority-0-high

#24 - Add basic user documentation

Issue - State: closed - Opened by gabbard almost 5 years ago

#23 - Use Pegasus's own checkpoint handling

Issue - State: closed - Opened by gabbard almost 5 years ago - 1 comment

#22 - Add class to wrap data splits

Pull Request - State: closed - Opened by gabbard almost 5 years ago - 1 comment

#21 - Test Coverage for `key_pair`

Issue - State: open - Opened by lichtefeld almost 5 years ago
Labels: size-small, priority-0-high

#20 - Various additional fixes in support of AA decoder pipeline

Pull Request - State: closed - Opened by gabbard almost 5 years ago - 1 comment

#17 - Robust CI testing for workflow creation

Pull Request - State: closed - Opened by lichtefeld almost 5 years ago - 2 comments

#14 - Implement robust testing of a sample workflow in CI

Issue - State: closed - Opened by lichtefeld almost 5 years ago

#13 - Have `run_python_on_parameters` take a params path or Parameters directly

Issue - State: closed - Opened by jamart28 almost 5 years ago - 1 comment

#11 - Support job throttling

Issue - State: closed - Opened by gabbard almost 5 years ago - 3 comments