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GitHub / irods/irods_capability_automated_ingest issues and pull requests

#308 - [#180] Update requirements.txt

Pull Request - State: closed - Opened by alanking 3 months ago - 7 comments

#307 - Bump werkzeug from 3.0.3 to 3.0.6

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#306 - [#299] Update changelog (main)

Pull Request - State: closed - Opened by korydraughn 3 months ago - 1 comment

#305 - [#266] Bump Celery minimum version

Pull Request - State: closed - Opened by alanking 3 months ago - 2 comments

#304 - [#299] Update changelog (main)

Pull Request - State: closed - Opened by korydraughn 4 months ago - 4 comments

#303 - [#299] v0.6.0, plus python version bumps

Pull Request - State: closed - Opened by alanking 4 months ago - 5 comments

#302 - [#261] Prevent Delete Mode with mapped paths

Pull Request - State: closed - Opened by alanking 4 months ago - 2 comments

#301 - `character_map` appends a random string to the end

Issue - State: open - Opened by alanking 4 months ago
Labels: documentation

#300 - Adding and fixing some tests

Pull Request - State: closed - Opened by alanking 4 months ago - 3 comments

#299 - Release activities for 0.6.0

Issue - State: closed - Opened by korydraughn 4 months ago - 1 comment
Labels: documentation

#298 - [#277] Do not add unreadable files to sync chunks

Pull Request - State: closed - Opened by alanking 4 months ago - 1 comment

#297 - Make `json_redis_key_handle` handle JSON

Issue - State: open - Opened by alanking 4 months ago
Labels: enhancement

#296 - Add an intentionally failing task which implicates individual files which failed to sync

Issue - State: open - Opened by alanking 4 months ago - 4 comments
Labels: enhancement

#295 - Add tests for periodic jobs

Issue - State: open - Opened by alanking 4 months ago - 1 comment
Labels: testing

#294 - `irods_sync` script fixes and enhancements (plus one other bug fix)

Pull Request - State: closed - Opened by alanking 4 months ago - 11 comments

#293 - Scheduling a periodic job fails on main

Issue - State: closed - Opened by alanking 4 months ago
Labels: bug

#292 - Investigate Python Metaclasses for redis_key types

Issue - State: open - Opened by alanking 4 months ago - 2 comments
Labels: enhancement, refactor

#291 - Add very basic S3 tests and fix some S3 bugs

Pull Request - State: closed - Opened by alanking 4 months ago - 3 comments

#290 - Fix PUT operation documentation and give node name to demo Celery workers

Pull Request - State: closed - Opened by alanking 4 months ago - 1 comment

#289 - `Operation.PUT` does not error when attempting to update existing data objects

Issue - State: closed - Opened by alanking 4 months ago
Labels: documentation

#288 - Add test for Delete Mode which deletes all files in a directory, but not the directory

Issue - State: closed - Opened by alanking 4 months ago
Labels: testing, needs-test

#287 - Assertions in `test_delete_modes` could be more comprehensive

Issue - State: open - Opened by alanking 4 months ago
Labels: testing

#286 - Create library functions for deriving test environment info

Issue - State: open - Opened by alanking 4 months ago
Labels: testing

#285 - S3 bucket syncs for uploading data not working

Issue - State: closed - Opened by alanking 4 months ago
Labels: bug

#284 - Implement recursive folder support for S3 bucket syncs

Issue - State: open - Opened by alanking 4 months ago
Labels: enhancement

#283 - Add Delete Mode

Pull Request - State: closed - Opened by alanking 4 months ago - 9 comments

#282 - Add Delete Mode for S3 buckets

Issue - State: open - Opened by alanking 4 months ago
Labels: enhancement

#281 - Rename new Celery tasks

Issue - State: closed - Opened by alanking 4 months ago
Labels: refactor

#280 - Investigate need for `time.sleep` after calling `os.makedirs`

Issue - State: closed - Opened by alanking 4 months ago - 3 comments
Labels: testing

#279 - Create a NO_OP-like delete mode

Issue - State: open - Opened by alanking 4 months ago
Labels: enhancement

#278 - [#276] Do not allow data transfers to redirect by default

Pull Request - State: closed - Opened by alanking 4 months ago - 7 comments

#277 - Unreadable files should not be added to sync chunks

Issue - State: closed - Opened by alanking 4 months ago - 7 comments
Labels: bug

#276 - `PUT`-like operations create extra connections which never clean up

Issue - State: closed - Opened by alanking 4 months ago - 2 comments
Labels: bug

#275 - Possible bug in `PUT` Operation when syncing to existing data objects

Issue - State: closed - Opened by alanking 4 months ago - 1 comment
Labels: bug, resolved/invalid

#274 - Refactor `sync_data_from_file` for filesystem and S3 syncing

Issue - State: closed - Opened by alanking 4 months ago
Labels: refactor

#273 - Investigate `parallel_upload_from_S3` chunking logic

Issue - State: open - Opened by alanking 4 months ago
Labels: refactor

#272 - `exclude_file_type` refactoring

Issue - State: closed - Opened by alanking 4 months ago
Labels: refactor

#271 - `child_of` function refactoring

Issue - State: open - Opened by alanking 4 months ago
Labels: refactor

#270 - `size` function does not account for multiple replicas

Issue - State: open - Opened by alanking 4 months ago
Labels: bug

#268 - [#257] Add documentation for meta dict

Pull Request - State: closed - Opened by alanking 4 months ago - 3 comments

#267 - New Celery app, remove kubernetes / flask, update tests to iRODS 4.3.3

Pull Request - State: closed - Opened by alanking 4 months ago - 13 comments

#266 - Bump celery dependency

Issue - State: closed - Opened by alanking 4 months ago - 1 comment
Labels: enhancement

#265 - Bump redis-py dependency

Issue - State: open - Opened by alanking 4 months ago
Labels: enhancement

#264 - Create event handler method for S3 keypair

Issue - State: open - Opened by alanking 4 months ago - 1 comment
Labels: enhancement

#263 - Bump python-irodsclient dependency to 2.1.0

Issue - State: closed - Opened by alanking 4 months ago - 2 comments
Labels: enhancement

#262 - Remove `flask.py` and flask dependencies

Issue - State: closed - Opened by alanking 4 months ago - 1 comment
Labels: enhancement

#261 - Integrate character_map / UnicodeEncodeError paths with delete operation feature

Issue - State: open - Opened by alanking 4 months ago - 6 comments
Labels: enhancement

#260 - Remove `hdlr_mod` parameter in static event handler methods

Issue - State: open - Opened by alanking 5 months ago
Labels: enhancement

#259 - Implement `except` and `finally` Event Handlers

Issue - State: open - Opened by alanking 5 months ago
Labels: enhancement

#258 - Expand README documentation, remove `--append_json`

Pull Request - State: closed - Opened by alanking 5 months ago - 5 comments

#257 - Document `meta` dict

Issue - State: closed - Opened by alanking 5 months ago
Labels: documentation

#256 - Investigate / Document `--profile` option

Issue - State: open - Opened by alanking 5 months ago - 1 comment
Labels: documentation

#255 - Add tests for `--profile` option

Issue - State: open - Opened by alanking 5 months ago - 4 comments
Labels: testing

#254 - Add tests for symlinks to directories

Issue - State: open - Opened by alanking 5 months ago
Labels: testing

#253 - Add tests for `--exclude_directory_name`

Issue - State: open - Opened by alanking 5 months ago
Labels: testing

#252 - Add tests for `files_per_task`

Issue - State: open - Opened by alanking 5 months ago
Labels: testing

#250 - Investigate use of `os.path` on iRODS and S3 paths

Issue - State: open - Opened by alanking 5 months ago
Labels: bug

#249 - Remove unneeded Docker projects

Pull Request - State: closed - Opened by alanking 5 months ago - 1 comment

#248 - docker: Remove or rework `performance_testing`

Issue - State: closed - Opened by alanking 5 months ago
Labels: enhancement

#247 - docker: Remove `point_and_click` project

Issue - State: closed - Opened by alanking 5 months ago
Labels: enhancement

#246 - docker: Remove `rq` and `rq-scheduler`

Issue - State: closed - Opened by alanking 5 months ago
Labels: enhancement

#245 - docker: Remove `irods-cockroachdb`

Issue - State: closed - Opened by alanking 5 months ago - 1 comment
Labels: enhancement

#244 - Create `irods_demo`-like Compose project

Issue - State: closed - Opened by alanking 5 months ago - 3 comments
Labels: enhancement

#243 - [238] v0.5.0 and update changelog

Pull Request - State: closed - Opened by trel 6 months ago - 5 comments

#242 - [#180] Add tags to gitignore

Pull Request - State: closed - Opened by alanking 6 months ago

#240 - `pre_coll_modify`/`post_coll_modify` invoked on first sync

Issue - State: open - Opened by alanking 7 months ago - 4 comments
Labels: bug

#239 - Bump certifi from 2023.7.22 to 2024.7.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 3 comments
Labels: dependencies

#238 - release activities for 0.5.0

Issue - State: closed - Opened by alanking 7 months ago - 1 comment
Labels: documentation

#237 - Add demo Compose project for testing

Pull Request - State: closed - Opened by alanking 7 months ago - 12 comments

#236 - Restore event handler interface, fix log formatting technique

Pull Request - State: closed - Opened by alanking 7 months ago - 13 comments

#235 - `ingest-test` Docker volume mounts a directory in `/tmp` on the host filesystem

Issue - State: closed - Opened by alanking 7 months ago
Labels: bug, testing

#234 - Bump urllib3 from 1.26.18 to 1.26.19

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#233 - Documentation updates

Pull Request - State: closed - Opened by alanking 8 months ago - 3 comments

#232 - Update or remove existing Kubernetes / Helm support

Issue - State: open - Opened by alanking 8 months ago - 2 comments
Labels: enhancement, documentation

#231 - Bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#230 - Bump werkzeug from 2.3.8 to 3.0.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#229 - Document using PRC client settings

Issue - State: closed - Opened by alanking 9 months ago - 4 comments
Labels: documentation

#228 - Investigate supporting an alternative/replacement for Redis as a key-value store

Issue - State: open - Opened by alanking 9 months ago - 3 comments
Labels: enhancement

#227 - Bump certifi from 2022.12.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#226 - Bump urllib3 from 1.26.5 to 1.26.18

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#225 - Bump jinja2 from 2.11.3 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#224 - Bump flask from 1.0.2 to 2.2.5

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#223 - Bump werkzeug from 2.2.3 to 2.3.8

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#222 - Use %-formatting instead of f-strings in `logging` calls

Issue - State: closed - Opened by alanking 9 months ago
Labels: enhancement, consortium-member

#221 - Fix failing tests

Pull Request - State: closed - Opened by alanking 9 months ago - 5 comments

#220 - Update `ingest-test` environment

Issue - State: closed - Opened by alanking 9 months ago
Labels: testing

#219 - Breaking change in event handler interface caused by #207

Issue - State: closed - Opened by rmoreas 9 months ago - 11 comments
Labels: bug, consortium-member

#218 - ssl_context in PRC connections should be more automatic

Issue - State: open - Opened by alanking 11 months ago - 4 comments
Labels: bug, consortium-member

#217 - Add testing for TLS connections

Issue - State: open - Opened by alanking 11 months ago
Labels: testing

#216 - Update documentation (and Dockerfiles) in ./docker/ingest-test

Issue - State: closed - Opened by alanking about 1 year ago - 4 comments
Labels: documentation

#215 - Investigate failing tests

Issue - State: closed - Opened by alanking about 1 year ago - 4 comments
Labels: bug

#214 - Add more detailed ingest option documentation

Issue - State: closed - Opened by alanking about 1 year ago
Labels: documentation

#212 - metadata.py in examples uses Operation.REGISTER instead of Operation.REGISTER_SYNC

Issue - State: closed - Opened by avkrishnamurthy over 1 year ago - 3 comments
Labels: bug

#211 - Create new Celery application with storage-specific tasks

Issue - State: closed - Opened by avkrishnamurthy over 1 year ago - 2 comments
Labels: refactor

#210 - Synchronous start job command doesn't exit when the job is stopped with the cli

Issue - State: closed - Opened by rmoreas over 1 year ago - 8 comments
Labels: bug, consortium-member

#209 - [#207] multi read and write from S3 to iRODS for put, putsync

Pull Request - State: closed - Opened by avkrishnamurthy over 1 year ago - 6 comments