Ecosyste.ms: Issues

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GitHub / iomega/spec2vec issues and pull requests

#90 - Fixed missing keyword in model dict

Pull Request - State: open - Opened by hechth about 1 year ago - 1 comment

#89 - Create 0.7.0 version

Pull Request - State: closed - Opened by florian-huber over 1 year ago

#88 - Move to matchms >=0.18.0

Pull Request - State: closed - Opened by florian-huber over 1 year ago

#87 - Getting nan score for spec2vec_similarity function

Issue - State: open - Opened by r00bit over 1 year ago - 3 comments

#86 - reduce the size score after calling calculate_stores

Issue - State: open - Opened by r00bit over 1 year ago - 1 comment

#85 - Issue83

Pull Request - State: closed - Opened by florian-huber over 1 year ago - 1 comment

#84 - Fix CI failing for Python 3.8 & 3.9 on ubuntu-latest

Pull Request - State: closed - Opened by maximskorik over 1 year ago - 1 comment

#83 - Two test failing with conda package and ubuntu

Issue - State: closed - Opened by florian-huber almost 2 years ago - 1 comment

#82 - Exclude Conda build test from automatic tests

Issue - State: closed - Opened by florian-huber almost 2 years ago - 3 comments

#81 - Model serialization

Pull Request - State: closed - Opened by florian-huber almost 2 years ago - 1 comment

#80 - Serialize Word2Vec model without Pickle

Pull Request - State: closed - Opened by maximskorik almost 2 years ago - 2 comments

#79 - about retrain the spec2vec model

Issue - State: open - Opened by LXXiaogege almost 2 years ago - 2 comments

#78 - [feature request] add JSON to export and import the model

Issue - State: closed - Opened by maximskorik almost 2 years ago

#77 - Adapt Spec2Vec to upcoming matchms Pipeline

Issue - State: closed - Opened by florian-huber over 2 years ago - 1 comment

#76 - Move to new matchms

Pull Request - State: closed - Opened by florian-huber over 2 years ago - 2 comments

#75 - move to isort 5

Pull Request - State: closed - Opened by florian-huber over 2 years ago - 1 comment

#74 - CITATION.cff fix and automatic validation of your citation metadata

Pull Request - State: open - Opened by abelsiqueira over 2 years ago - 1 comment

#73 - add logging

Pull Request - State: closed - Opened by florian-huber over 2 years ago - 3 comments

#72 - change allowed_missing_percentage default

Pull Request - State: closed - Opened by florian-huber over 2 years ago - 1 comment

#71 - increase default for missing word threshold

Issue - State: closed - Opened by florian-huber over 2 years ago - 1 comment

#70 - Add logging

Issue - State: closed - Opened by florian-huber over 2 years ago

#69 - Issues with pylint 1.22

Issue - State: open - Opened by florian-huber over 2 years ago

#68 - Support Python 3.9

Pull Request - State: closed - Opened by florian-huber over 2 years ago - 2 comments

#67 - define spec2vec_similarity throws AttributeError

Issue - State: closed - Opened by chrispook almost 3 years ago - 4 comments

#66 - Conda install CondaValueError

Issue - State: open - Opened by justinjjvanderhooft about 3 years ago - 5 comments

#65 - Conda publish workflow fails

Issue - State: closed - Opened by florian-huber about 3 years ago - 4 comments

#64 - Update conda_publish.yml

Pull Request - State: open - Opened by florian-huber about 3 years ago - 1 comment

#63 - Train model kwargs collides with __init__.py

Issue - State: closed - Opened by benbowen about 3 years ago - 2 comments

#62 - Make compatible with gensim 4.0.0

Pull Request - State: closed - Opened by niekdejonge about 3 years ago - 2 comments

#61 - Make spec2vec compatible with gensim4.0.0

Issue - State: closed - Opened by niekdejonge about 3 years ago - 4 comments

#60 - Define Spec2VecModel

Issue - State: open - Opened by florian-huber over 3 years ago - 1 comment

#59 - Add Spec2Vec to Bioconda

Issue - State: open - Opened by florian-huber over 3 years ago - 2 comments

#58 - Add mz range attributes

Pull Request - State: open - Opened by florian-huber over 3 years ago - 1 comment

#56 - macOS conda publish run fails

Issue - State: closed - Opened by florian-huber over 3 years ago - 1 comment

#55 - fix failed publish run for macOS

Pull Request - State: closed - Opened by florian-huber over 3 years ago - 1 comment

#54 - Refactor Spec2Vec and allow both Spectrum and SpectrumDocument input

Pull Request - State: closed - Opened by florian-huber over 3 years ago - 4 comments

#53 - add is_symmetric implementation

Pull Request - State: closed - Opened by florian-huber over 3 years ago - 1 comment

#52 - Change type BaseTopicModel to Word2Vec

Issue - State: closed - Opened by niekdejonge over 3 years ago

#51 - Make Spectrum->Document conversion part of Spec2Vec class

Issue - State: closed - Opened by florian-huber over 3 years ago - 2 comments

#50 - Add getter

Pull Request - State: closed - Opened by florian-huber over 3 years ago - 3 comments

#48 - update readme to new API

Pull Request - State: closed - Opened by florian-huber over 3 years ago - 1 comment

#47 - experiment with peak priority based training

Issue - State: open - Opened by florian-huber over 3 years ago

#46 - make missing fraction an optional warning

Issue - State: closed - Opened by florian-huber over 3 years ago - 1 comment

#44 - Publish run failing at verify step

Issue - State: closed - Opened by florian-huber over 3 years ago - 1 comment

#43 - add tqdm progress bar to embedding creation step.

Pull Request - State: closed - Opened by florian-huber over 3 years ago - 2 comments

#42 - Add progress bar for spec2vec.matrix() calculation

Issue - State: closed - Opened by florian-huber over 3 years ago

#41 - Add alternative binning option

Issue - State: closed - Opened by florian-huber over 3 years ago - 1 comment
Labels: enhancement

#40 - Support Python 3.9

Issue - State: closed - Opened by sverhoeven over 3 years ago - 5 comments

#39 - Prepare making spec2vec pip installable

Pull Request - State: closed - Opened by florian-huber over 3 years ago - 2 comments

#38 - make pip installable

Issue - State: closed - Opened by florian-huber over 3 years ago - 2 comments

#37 - Publish run is failing for macOS

Issue - State: closed - Opened by florian-huber almost 4 years ago - 2 comments

#36 - Update documentation to refactored version

Pull Request - State: closed - Opened by florian-huber almost 4 years ago - 1 comment

#35 - Refactor to work with matchms 0.6.0

Pull Request - State: closed - Opened by florian-huber almost 4 years ago - 9 comments

#34 - update environment and include Python 3.8

Issue - State: closed - Opened by florian-huber almost 4 years ago - 1 comment

#33 - Adapt score class once matchms switches to BaseSimilarity class

Issue - State: closed - Opened by florian-huber almost 4 years ago - 2 comments

#32 - add metgem analysis

Issue - State: closed - Opened by jspaaks almost 4 years ago - 1 comment

#31 - Update environment-dev.yml

Pull Request - State: closed - Opened by florian-huber almost 4 years ago - 2 comments

#30 - Update matchms dependency

Issue - State: closed - Opened by florian-huber almost 4 years ago

#29 - Add new cosine_implementation

Pull Request - State: closed - Opened by florian-huber almost 4 years ago - 4 comments

#28 - add smart_open>=2.00

Pull Request - State: closed - Opened by florian-huber almost 4 years ago - 1 comment

#27 - macOS build fails

Issue - State: closed - Opened by florian-huber almost 4 years ago - 1 comment

#26 - Check if matchms similarity function is faster than scipy one.

Issue - State: closed - Opened by florian-huber almost 4 years ago - 1 comment
Labels: enhancement

#25 - Create RSD page

Issue - State: closed - Opened by sverhoeven almost 4 years ago - 11 comments

#24 - change isort version

Pull Request - State: closed - Opened by florian-huber almost 4 years ago - 1 comment

#23 - pylint fails - seems analoge to what happend to matchms before

Issue - State: closed - Opened by florian-huber almost 4 years ago - 4 comments

#22 - Some small minor fixes.

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 1 comment

#21 - Test examples in doc strings and ducmentation

Issue - State: open - Opened by sverhoeven about 4 years ago

#20 - Extend index.rst page

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 2 comments

#19 - Update installation instructions

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 2 comments

#18 - Specify SpectrumType without importing matchms

Issue - State: closed - Opened by florian-huber about 4 years ago - 5 comments

#17 - Update to matchms 0.4.0

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 2 comments

#16 - Add way to handle rare case of calc_vector failure

Issue - State: closed - Opened by florian-huber about 4 years ago - 1 comment

#14 - Add functions to train new word2vec model and loggers

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 3 comments

#13 - Create spec2vec centric wrapper for gensim word2vec

Issue - State: closed - Opened by florian-huber about 4 years ago - 2 comments

#12 - Handle words missing from word2vec model

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 3 comments

#11 - Add logger or progress bar

Issue - State: closed - Opened by florian-huber about 4 years ago - 1 comment

#10 - Install instructions on anaconda don't work

Issue - State: closed - Opened by sverhoeven about 4 years ago - 1 comment

#9 - Handle "missing word" cases

Issue - State: closed - Opened by florian-huber about 4 years ago

#8 - Update integration test and remove documents parameter from Spec2Vec

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 2 comments

#7 - integration test model need retraining

Issue - State: closed - Opened by florian-huber about 4 years ago - 2 comments

#6 - Add docstrings

Pull Request - State: closed - Opened by florian-huber about 4 years ago - 7 comments

#5 - Remove Python build in CI

Issue - State: closed - Opened by fdiblen about 4 years ago - 1 comment

#4 - aligned with matchms

Pull Request - State: closed - Opened by jspaaks about 4 years ago - 1 comment

#3 - spec2vec hook up services

Issue - State: closed - Opened by jspaaks about 4 years ago - 1 comment

#2 - numpy and or scipy?

Issue - State: closed - Opened by jspaaks about 4 years ago

#1 - Splitting off spec2vec

Pull Request - State: closed - Opened by jspaaks about 4 years ago - 2 comments