iobis/obistools issues and pull requests

#90 - Remove rgeos/rgdal dependencies and update functions for sf/terra/stars

Issue - State: open - Opened by silasprincipe 10 months ago - 14 comments
Labels: enhancement, to-discuss

#90 - Remove rgeos/rgdal dependencies and update functions for sf/terra/stars

Issue - State: open - Opened by silasprincipe 10 months ago - 13 comments
Labels: enhancement, to-discuss

#89 - This gives the error ''Error in which(as.vector(shoredistances) < (-1 * buffer)) : 'list' object cannot be coerced to type 'double' , and ''unlist'' should be added before the shoreline.

Issue - State: open - Opened by haniehsaeedi about 2 years ago - 8 comments

#88 - line 53 of check_onland add unlist to resolve error of issue #87

Pull Request - State: closed - Opened by savvas-paragkamian over 2 years ago - 1 comment

#87 - error on check_onland function

Issue - State: open - Opened by savvas-paragkamian over 2 years ago

#73 - Citation extraction as csv not a doi

Issue - State: open - Opened by haniehsaeedi about 3 years ago

#72 - error in check_extension_eventids

Issue - State: open - Opened by diodon about 5 years ago - 4 comments

#71 - Failed to connect to api.iobis.org port 80: Connection refused

Issue - State: closed - Opened by rubenpp7 about 5 years ago - 4 comments

#70 - anchor links not working in pkgdown docs

Issue - State: open - Opened by pieterprovoost over 5 years ago
Labels: bug

#69 - check_onland() not working atm?

Issue - State: closed - Opened by Daphnisd over 5 years ago - 2 comments

#68 - map_fields

Issue - State: closed - Opened by Daphnisd over 5 years ago - 1 comment

#67 - match_taxa object AphiaID not found

Issue - State: closed - Opened by pieterprovoost over 5 years ago - 1 comment
Labels: bug, taxonomy

#66 - check on land function no longer working?

Issue - State: closed - Opened by Daphnisd almost 6 years ago - 1 comment

#65 - check_lonlat() should check for NA values

Issue - State: open - Opened by pieterprovoost about 6 years ago

#64 - report() fails with missing coordinates

Issue - State: open - Opened by pieterprovoost about 6 years ago
Labels: bug

#63 - exclude deleted AphiaIDs from matches

Issue - State: open - Opened by pieterprovoost over 6 years ago
Labels: taxonomy

#62 - identify_map error

Issue - State: open - Opened by pieterprovoost over 6 years ago - 6 comments
Labels: bug

#61 - Collapse warning in the report

Issue - State: closed - Opened by samuelbosch over 6 years ago

#60 - Question regarding the source for the grid package

Issue - State: closed - Opened by ocefpaf over 6 years ago - 2 comments

#59 - Create function(s) for helping with the creation of ISO conform eventDate

Issue - State: open - Opened by samuelbosch over 6 years ago

#58 - handle Date in check_eventdate()

Issue - State: closed - Opened by pieterprovoost over 6 years ago - 1 comment
Labels: bug

#57 - treeStructure() does not list event level measurement types

Issue - State: closed - Opened by pieterprovoost over 6 years ago - 1 comment
Labels: bug

#56 - detect_fields

Issue - State: open - Opened by samuelbosch over 6 years ago

#55 - checking data for non-ASCII characters ... WARNING

Issue - State: closed - Opened by samuelbosch almost 7 years ago

#54 - Limit size of obistools R package (move land.Rda)

Issue - State: closed - Opened by samuelbosch almost 7 years ago

#53 - Create README.Rmd

Issue - State: open - Opened by samuelbosch almost 7 years ago

#52 - remove or change dependency to iobis/worms

Issue - State: closed - Opened by samuelbosch almost 7 years ago - 1 comment
Labels: bug, to-discuss

#51 - Expand Description in the DESCRIPTION file

Issue - State: closed - Opened by samuelbosch almost 7 years ago
Labels: enhancement

#50 - enter LSID manually during taxonmatching

Issue - State: open - Opened by pieterprovoost almost 7 years ago
Labels: taxonomy

#49 - typo in check_depth documentation

Issue - State: closed - Opened by data-biodiversity-aq almost 7 years ago - 1 comment

#48 - xylookup fails

Issue - State: closed - Opened by pieterprovoost almost 7 years ago - 1 comment

#47 - Better check_depth/check_onland output

Issue - State: open - Opened by samuelbosch almost 7 years ago - 1 comment
Labels: enhancement, to-discuss

#46 - would be nice to have LINESTRING supported for calculate_centroid

Issue - State: closed - Opened by data-biodiversity-aq almost 7 years ago - 1 comment
Labels: enhancement

#45 - open tree in browser

Issue - State: closed - Opened by samuelbosch almost 7 years ago - 1 comment
Labels: enhancement

#44 - check_depth: add option to provide additional bathymetry layers

Issue - State: closed - Opened by samuelbosch almost 7 years ago - 3 comments
Labels: enhancement

#43 - depth check issue

Issue - State: closed - Opened by pieterprovoost almost 7 years ago - 1 comment
Labels: bug

#42 - depth check issue

Issue - State: closed - Opened by pieterprovoost almost 7 years ago - 1 comment
Labels: bug

#41 - OBIS env to GBIF Event data transformation script

Issue - State: open - Opened by Daphnisd almost 7 years ago

#40 - fix xylookup endpoint in tests

Issue - State: closed - Opened by pieterprovoost almost 7 years ago - 1 comment

#39 - check_depth() problem

Issue - State: closed - Opened by pieterprovoost almost 7 years ago - 2 comments
Labels: bug

#38 - Add option for eventid column name

Issue - State: open - Opened by pieterprovoost almost 7 years ago

#37 - fix crosstalk warnings

Issue - State: open - Opened by pieterprovoost almost 7 years ago - 1 comment

#36 - taxon matching: document y/n/p

Issue - State: closed - Opened by pieterprovoost almost 7 years ago - 1 comment

#35 - taxon matching: show input name

Issue - State: closed - Opened by pieterprovoost almost 7 years ago - 1 comment

#34 - support scientific name labels on Leaflet map

Issue - State: closed - Opened by pieterprovoost almost 7 years ago

#33 - tree structure: issue warning for empty strings in identifier fields

Issue - State: open - Opened by pieterprovoost almost 7 years ago

#32 - tree structure issue

Issue - State: open - Opened by pieterprovoost about 7 years ago - 1 comment

#31 - dataset tree only event core and occurrence extension

Issue - State: closed - Opened by wardappeltans about 7 years ago - 1 comment

#30 - check if eventDate value in future

Issue - State: open - Opened by pieterprovoost about 7 years ago
Labels: time

#29 - check records against known OBIS distributions

Issue - State: open - Opened by pieterprovoost about 7 years ago

#28 - incorrect hyperbenthos tree

Issue - State: closed - Opened by pieterprovoost about 7 years ago - 1 comment

#27 - fix dependencies

Issue - State: open - Opened by pieterprovoost about 7 years ago
Labels: bug

#26 - improve tree structure algorithm

Issue - State: closed - Opened by pieterprovoost about 7 years ago

#25 - event tree HTML output

Issue - State: open - Opened by pieterprovoost about 7 years ago

#24 - calculate_centroid needs rgeos

Issue - State: closed - Opened by ekleins about 7 years ago - 1 comment

#23 - identify points on Leaflet map by drawing polygon

Issue - State: open - Opened by pieterprovoost about 7 years ago
Labels: enhancement

#22 - match_taxa output: includes original names

Issue - State: open - Opened by ekleins over 7 years ago
Labels: taxonomy

#21 - flatten out measurements or facts

Issue - State: open - Opened by Daphnisd over 7 years ago

#20 - check fossil taxa

Issue - State: open - Opened by pieterprovoost over 7 years ago
Labels: enhancement, taxonomy

#19 - check date value, not just format

Issue - State: open - Opened by pieterprovoost over 7 years ago
Labels: time

#18 - Error in completing the function in R Studio

Issue - State: closed - Opened by ekleins over 7 years ago - 2 comments

#17 - convert eventDate from and to UTC or local time

Issue - State: open - Opened by pieterprovoost over 7 years ago
Labels: time

#16 - HTML data quality report

Issue - State: closed - Opened by pieterprovoost over 7 years ago
Labels: enhancement

#15 - check ISO 8601 dates

Issue - State: closed - Opened by pieterprovoost over 7 years ago
Labels: enhancement

#14 - check points on land

Issue - State: closed - Opened by pieterprovoost over 7 years ago
Labels: enhancement

#13 - offline taxon matching

Issue - State: open - Opened by pieterprovoost over 7 years ago - 1 comment
Labels: enhancement, taxonomy