Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / intermine/pombemine issues and pull requests

#73 - Internal Server Error

Issue - State: open - Opened by Meganmli about 1 year ago - 4 comments

#73 - Internal Server Error

Issue - State: open - Opened by Meganmli about 1 year ago - 4 comments

#72 - Service URL for InterMine

Issue - State: closed - Opened by Meganmli about 1 year ago - 3 comments

#72 - Service URL for InterMine

Issue - State: closed - Opened by Meganmli about 1 year ago - 3 comments

#71 - Set up Google Analytics

Issue - State: closed - Opened by ValWood over 2 years ago - 6 comments
Labels: please-test

#71 - Set up Google Analytics

Issue - State: closed - Opened by ValWood over 2 years ago - 6 comments
Labels: please-test

#70 - regions

Issue - State: open - Opened by ValWood over 2 years ago - 6 comments

#70 - regions

Issue - State: open - Opened by ValWood over 2 years ago - 6 comments

#69 - GO term page does not show annotations

Issue - State: open - Opened by ValWood over 2 years ago - 7 comments

#69 - GO term page does not show annotations

Issue - State: open - Opened by ValWood over 2 years ago - 7 comments

#68 - Server error after removing column

Issue - State: open - Opened by kimrutherford over 2 years ago
Labels: low priority

#68 - Server error after removing column

Issue - State: open - Opened by kimrutherford over 2 years ago
Labels: low priority

#67 - Gene list upload doesn't work with "Any" from the organism selector

Issue - State: closed - Opened by kimrutherford over 2 years ago - 1 comment
Labels: low priority

#67 - Gene list upload doesn't work with "Any" from the organism selector

Issue - State: closed - Opened by kimrutherford over 2 years ago - 1 comment
Labels: low priority

#66 - Help needed for www.pombase.org/pombemine configuration

Issue - State: open - Opened by kimrutherford over 2 years ago - 13 comments
Labels: configuration, high priority

#66 - Help needed for www.pombase.org/pombemine configuration

Issue - State: open - Opened by kimrutherford over 2 years ago - 13 comments
Labels: configuration, high priority

#63 - Load EC number description

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments
Labels: low priority

#63 - Load EC number description

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments
Labels: low priority

#62 - conditions currently create separate annotations

Issue - State: open - Opened by ValWood over 2 years ago - 2 comments

#62 - conditions currently create separate annotations

Issue - State: open - Opened by ValWood over 2 years ago - 2 comments

#61 - Question: How to access protein domain beginning from gene?

Issue - State: closed - Opened by ValWood over 2 years ago - 4 comments
Labels: question

#61 - Question: How to access protein domain beginning from gene?

Issue - State: closed - Opened by ValWood over 2 years ago - 4 comments
Labels: question

#60 - Allele description "NO VALUE" can be inferred for some columns

Issue - State: open - Opened by ValWood over 2 years ago - 7 comments
Labels: low priority

#60 - Allele description "NO VALUE" can be inferred for some columns

Issue - State: open - Opened by ValWood over 2 years ago - 7 comments
Labels: low priority

#59 - Homolog symbol is not loaded for S. cerevisiae orthlogs

Issue - State: open - Opened by ValWood over 2 years ago - 1 comment
Labels: low priority

#59 - Homolog symbol is not loaded for S. cerevisiae orthlogs

Issue - State: open - Opened by ValWood over 2 years ago - 1 comment
Labels: low priority

#58 - General issues (UniProt protein label)

Issue - State: open - Opened by ValWood over 2 years ago
Labels: data_issue, configuration, low priority

#58 - General issues (UniProt protein label)

Issue - State: open - Opened by ValWood over 2 years ago
Labels: data_issue, configuration, low priority

#57 - Modelling penetrance and severity

Issue - State: closed - Opened by ValWood over 2 years ago - 7 comments
Labels: please-test

#57 - Modelling penetrance and severity

Issue - State: closed - Opened by ValWood over 2 years ago - 7 comments
Labels: please-test

#56 - Can we make queries through the HTTP API

Issue - State: closed - Opened by manulera over 2 years ago - 3 comments

#56 - Can we make queries through the HTTP API

Issue - State: closed - Opened by manulera over 2 years ago - 3 comments

#55 - Don't load "comments " from UniProt

Issue - State: open - Opened by ValWood over 2 years ago - 6 comments
Labels: configuration, low priority, please-test

#55 - Don't load "comments " from UniProt

Issue - State: open - Opened by ValWood over 2 years ago - 6 comments
Labels: configuration, low priority, please-test

#54 - Annotation extensions are not available for phenotypes

Issue - State: open - Opened by ValWood over 2 years ago - 1 comment
Labels: data_issue, low priority

#54 - Annotation extensions are not available for phenotypes

Issue - State: open - Opened by ValWood over 2 years ago - 1 comment
Labels: data_issue, low priority

#53 - modelling MONDO associations to human (include the entire dataset, not our curated associations)

Issue - State: open - Opened by ValWood over 2 years ago - 4 comments
Labels: data_issue, low priority

#53 - modelling MONDO associations to human (include the entire dataset, not our curated associations)

Issue - State: open - Opened by ValWood over 2 years ago - 4 comments
Labels: data_issue, low priority

#52 - Modelling of annotation extensions

Issue - State: open - Opened by ValWood over 2 years ago - 10 comments
Labels: data_issue, model_fix, high priority, please-test

#52 - Modelling of annotation extensions

Issue - State: open - Opened by ValWood over 2 years ago - 10 comments
Labels: data_issue, model_fix, high priority, please-test

#51 - SPCC548.03c from "GO annotation dataset" (plus question, how to query the "with" filed?)

Issue - State: closed - Opened by ValWood over 2 years ago - 13 comments
Labels: question, low priority

#51 - SPCC548.03c from "GO annotation dataset" (plus question, how to query the "with" filed?)

Issue - State: closed - Opened by ValWood over 2 years ago - 13 comments
Labels: question, low priority

#50 - Gene represented differently in differently query outputs (SPBC28F2.11)

Issue - State: closed - Opened by ValWood over 2 years ago - 3 comments

#50 - Gene represented differently in differently query outputs (SPBC28F2.11)

Issue - State: closed - Opened by ValWood over 2 years ago - 3 comments

#49 - A question, how to 'suppress' the "gene flanking" on this search

Issue - State: closed - Opened by ValWood over 2 years ago - 5 comments
Labels: low priority, please-test

#49 - A question, how to 'suppress' the "gene flanking" on this search

Issue - State: closed - Opened by ValWood over 2 years ago - 5 comments
Labels: low priority, please-test

#48 - "organism" is not populated in search view

Issue - State: closed - Opened by ValWood over 2 years ago - 1 comment
Labels: data_issue, low priority

#48 - "organism" is not populated in search view

Issue - State: closed - Opened by ValWood over 2 years ago - 1 comment
Labels: data_issue, low priority

#47 - A small number of rows where gene name, symbol and feature type have "no value"

Issue - State: closed - Opened by ValWood over 2 years ago - 15 comments

#47 - A small number of rows where gene name, symbol and feature type have "no value"

Issue - State: closed - Opened by ValWood over 2 years ago - 15 comments

#46 - Search on a gene sometimes gives 2 features not one

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments
Labels: bug

#45 - gene network widget for gene list

Issue - State: open - Opened by ValWood over 2 years ago - 15 comments
Labels: bug

#45 - gene network widget for gene list

Issue - State: open - Opened by ValWood over 2 years ago - 15 comments
Labels: bug

#44 - populate "gene name" field

Issue - State: closed - Opened by ValWood over 2 years ago - 1 comment
Labels: data_issue, low priority, please-test

#44 - populate "gene name" field

Issue - State: closed - Opened by ValWood over 2 years ago - 1 comment
Labels: data_issue, low priority, please-test

#43 - Configure email server on CSC

Issue - State: closed - Opened by danielabutano over 2 years ago - 1 comment

#43 - Configure email server on CSC

Issue - State: closed - Opened by danielabutano over 2 years ago - 1 comment

#42 - multi-allele genotypes and phenotypes

Issue - State: closed - Opened by ValWood over 2 years ago - 4 comments
Labels: wontfix

#42 - multi-allele genotypes and phenotypes

Issue - State: closed - Opened by ValWood over 2 years ago - 4 comments
Labels: wontfix

#41 - allele synonyms are not loaded

Issue - State: closed - Opened by ValWood over 2 years ago - 7 comments
Labels: data_issue, high priority, please-test

#41 - allele synonyms are not loaded

Issue - State: closed - Opened by ValWood over 2 years ago - 7 comments
Labels: data_issue, high priority, please-test

#40 - Import Rhea terms linked to GO MFs

Issue - State: open - Opened by ValWood over 2 years ago - 2 comments
Labels: data_issue, low priority

#39 - include orthologs from Panther

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments
Labels: data_issue, needs_checking_next_load, please-test

#39 - include orthologs from Panther

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments
Labels: data_issue, needs_checking_next_load, please-test

#38 - Errors on gene summary pages (visualizations AND templates)

Issue - State: closed - Opened by ValWood almost 3 years ago - 15 comments
Labels: bug

#38 - Errors on gene summary pages (visualizations AND templates)

Issue - State: closed - Opened by ValWood almost 3 years ago - 15 comments
Labels: bug

#37 - Overlapping features are reported that aren't overlapping

Issue - State: closed - Opened by ValWood almost 3 years ago - 9 comments
Labels: bug

#37 - Overlapping features are reported that aren't overlapping

Issue - State: closed - Opened by ValWood almost 3 years ago - 9 comments
Labels: bug

#36 - problem with data displayed on summary pages (Flanking regions)

Issue - State: closed - Opened by ValWood almost 3 years ago - 6 comments

#36 - problem with data displayed on summary pages (Flanking regions)

Issue - State: closed - Opened by ValWood almost 3 years ago - 6 comments

#35 - problem with data displayed on summary pages (orthologs)

Issue - State: closed - Opened by ValWood almost 3 years ago - 2 comments

#35 - problem with data displayed on summary pages (orthologs)

Issue - State: closed - Opened by ValWood almost 3 years ago - 2 comments

#34 - GO term -> annotation ignores ontology inferences

Issue - State: closed - Opened by ValWood almost 3 years ago - 24 comments
Labels: enhancement

#34 - GO term -> annotation ignores ontology inferences

Issue - State: closed - Opened by ValWood almost 3 years ago - 24 comments
Labels: enhancement

#33 - Publication, no datasource loaded

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments
Labels: configuration

#33 - Publication, no datasource loaded

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments
Labels: configuration

#32 - Chromosome

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments

#32 - Chromosome

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments

#31 - In appropriate starting classes to remove from the. menu

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments
Labels: configuration

#31 - In appropriate starting classes to remove from the. menu

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments
Labels: configuration

#30 - Change phenotype ontology enrichment to be based on Gene rather than allele

Issue - State: closed - Opened by rachellyne almost 3 years ago - 1 comment

#30 - Change phenotype ontology enrichment to be based on Gene rather than allele

Issue - State: closed - Opened by rachellyne almost 3 years ago - 1 comment

#29 - Add reference to Gene class from Uniprot class

Issue - State: closed - Opened by rachellyne almost 3 years ago - 1 comment
Labels: enhancement

#29 - Add reference to Gene class from Uniprot class

Issue - State: closed - Opened by rachellyne almost 3 years ago - 1 comment
Labels: enhancement

#28 - Add enrichment for phenotypes

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments

#28 - Add enrichment for phenotypes

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments

#27 - phenotype annotation

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments
Labels: discuss

#27 - phenotype annotation

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments
Labels: discuss

#26 - Adding 'subject ' to an allele annotation query

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments
Labels: discuss

#25 - pipe separator for some GO IDs in the "with/from" field with IC evidence code

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments

#25 - pipe separator for some GO IDs in the "with/from" field with IC evidence code

Issue - State: closed - Opened by ValWood almost 3 years ago - 4 comments

#24 - publication number

Issue - State: closed - Opened by ValWood almost 3 years ago - 3 comments

#24 - publication number

Issue - State: closed - Opened by ValWood almost 3 years ago - 3 comments

#23 - Dataset on publications class

Issue - State: closed - Opened by rachellyne almost 3 years ago - 2 comments

#23 - Dataset on publications class

Issue - State: closed - Opened by rachellyne almost 3 years ago - 2 comments

#22 - (BJ) possible bug in GO publication filtering

Issue - State: closed - Opened by ValWood almost 3 years ago - 3 comments
Labels: bug