intermine/bluegenes issues and pull requests

#842 - Problems with list upload

Issue - State: open - Opened by hendrikweisser over 1 year ago

#841 - Hide sections on homepage not working

Issue - State: closed - Opened by hendrikweisser over 1 year ago - 1 comment

#840 - Permanent URL points to backing legacy mine, not Bluegenes.

Issue - State: open - Opened by sammyjava over 1 year ago - 2 comments

#839 - Support React 18 createRoot in index.js

Issue - State: open - Opened by sammyjava almost 2 years ago - 1 comment

#838 - Update im-tables to 0.15.0

Pull Request - State: closed - Opened by heralden almost 2 years ago

#837 - Viewing interaction tools (various, availability and bugs)

Issue - State: open - Opened by ValWood about 2 years ago - 2 comments

#836 - Move enrichment panel below query results table

Issue - State: open - Opened by heralden about 2 years ago
Labels: enhancement, Results page, UI/UX, usertesting

#835 - More custom tracking events

Issue - State: open - Opened by heralden about 2 years ago
Labels: enhancement

#834 - Add config var to remove widgets, enrichment and tools from query results page

Issue - State: open - Opened by heralden about 2 years ago
Labels: enhancement, Results page

#833 - Update Google Analytics and improve tracking

Pull Request - State: closed - Opened by heralden about 2 years ago

#832 - Update Google analytics

Issue - State: closed - Opened by heralden about 2 years ago
Labels: High priority

#831 - Do not use attribute of ref/coll of report page class for title

Issue - State: closed - Opened by heralden about 2 years ago
Labels: bug, Report page

#830 - Use webconfig-model.xml headerconfig for report title

Issue - State: open - Opened by heralden about 2 years ago - 4 comments
Labels: enhancement, Report page, InterMine backend

#829 - Update README.md

Pull Request - State: closed - Opened by marveluck about 2 years ago - 1 comment

#828 - Mine logo URL is hardcoded in nav.cljs rather than given by branding.images.logo

Issue - State: closed - Opened by sammyjava about 2 years ago - 2 comments

#827 - mine logo has wrong URL

Issue - State: closed - Opened by sammyjava about 2 years ago - 1 comment

#826 - enrichment default should be to gene not allele

Issue - State: open - Opened by ValWood over 2 years ago - 4 comments
Labels: Results page

#825 - Use summaryfields when displaying search results

Issue - State: closed - Opened by heralden over 2 years ago
Labels: enhancement, Search

#824 - Quickfixes/1.4.3

Pull Request - State: closed - Opened by heralden over 2 years ago

#823 - Better error message for saving a list with an existing name

Issue - State: open - Opened by ValWood over 2 years ago - 1 comment
Labels: im-tables-3

#822 - Cannot always select from drop down

Issue - State: open - Opened by ValWood over 2 years ago - 1 comment

#821 - Front page "intermine for all" section

Issue - State: open - Opened by ValWood over 2 years ago

#820 - GI viewer working on test link but not on main site/ bug

Issue - State: open - Opened by ValWood over 2 years ago - 6 comments

#819 - COnfigure contents of gene list

Issue - State: open - Opened by ValWood over 2 years ago - 1 comment

#818 - Column summary is too tall for most screens, pushing its button outside window boundary

Issue - State: closed - Opened by ValWood over 2 years ago - 5 comments
Labels: im-tables-3

#817 - make Enrichment widget avaiable to bio-entity DB identifier?

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments

#816 - Use lists of type "Gene" in templates

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments

#815 - Sending lists to other mines

Issue - State: open - Opened by ValWood over 2 years ago - 3 comments

#814 - Links to PomBase

Issue - State: open - Opened by ValWood over 2 years ago - 3 comments

#813 - Show I'mpublic label in template manager for Admins

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments
Labels: enhancement, Templates

#812 - Constrain with custom value not part of possible values

Issue - State: closed - Opened by heralden over 2 years ago
Labels: Query Builder

#811 - Cannot acces 'gene' list for GO query

Issue - State: closed - Opened by ValWood over 2 years ago - 3 comments

#810 - Unable to save list

Issue - State: closed - Opened by ValWood over 2 years ago - 5 comments

#809 - Some high level (i.e GO slim) terms will be unavailable for searching as they do not have direct annotations

Issue - State: closed - Opened by ValWood over 2 years ago - 7 comments
Labels: InterMine backend

#808 - When linking in to ID resolver, first object type is selected for saving list, regardless of class specified

Issue - State: closed - Opened by ValWood over 2 years ago - 5 comments
Labels: bug, List upload / ID resolver

#807 - Getting a list from the query builder to the gene lists

Issue - State: closed - Opened by ValWood over 2 years ago - 1 comment

#806 - negative constraint for conditions

Issue - State: closed - Opened by ValWood over 2 years ago - 5 comments

#805 - "Go by most popular queries" is empty when templates are unranked

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments
Labels: bug, Templates, Home

#804 - "with" field attributes separated

Issue - State: closed - Opened by ValWood over 2 years ago - 2 comments

#803 - Add a WebService URL button in the query builder

Issue - State: open - Opened by danielabutano over 2 years ago
Labels: enhancement, Query Builder

#802 - Multi-mine data federation

Issue - State: open - Opened by heralden over 2 years ago
Labels: enhancement

#801 - Make it easier to use custom tools in BG cloud instances

Issue - State: open - Opened by heralden over 2 years ago
Labels: enhancement, Tool API

#800 - Support setting configurables for Tools

Issue - State: open - Opened by heralden over 2 years ago
Labels: enhancement, Tool API

#799 - Unable to constrain boolean values in query builder

Issue - State: closed - Opened by ValWood over 2 years ago - 8 comments
Labels: bug, Query Builder

#798 - add a scroll bar to the top of the results table

Issue - State: open - Opened by ValWood over 2 years ago
Labels: enhancement, im-tables-3

#797 - Incorrect counts when saving a list

Issue - State: closed - Opened by heralden over 2 years ago - 1 comment
Labels: bug, Results page, im-tables-3

#796 - Make browse sources query customisable

Issue - State: open - Opened by heralden over 2 years ago
Labels: enhancement, InterMine backend, Medium priority

#795 - Various improvements and fixes for 1.4.2

Pull Request - State: closed - Opened by heralden over 2 years ago

#794 - Make mine logo and name more prominent in header

Issue - State: closed - Opened by heralden over 2 years ago
Labels: UI/UX

#793 - Report enrichment p-values to 2DP

Issue - State: closed - Opened by rachellyne over 2 years ago
Labels: Results page

#792 - Support POST for portal.do endpoint

Issue - State: closed - Opened by heralden over 2 years ago

#791 - Fix template constraints not being cleaned on report page

Issue - State: closed - Opened by heralden over 2 years ago
Labels: bug, Report page

#790 - possible bug in list reporting

Issue - State: closed - Opened by ValWood over 2 years ago - 9 comments

#789 - Work on im-tables-3 issues

Issue - State: open - Opened by heralden over 2 years ago
Labels: im-tables-3

#788 - text search

Issue - State: closed - Opened by ValWood over 2 years ago - 1 comment

#787 - Handle mines without any preferredbagtypes in model

Pull Request - State: closed - Opened by heralden over 2 years ago

#786 - Combined column summaries

Issue - State: open - Opened by heralden over 2 years ago

#785 - Add clear button to region search page

Issue - State: closed - Opened by heralden over 2 years ago
Labels: enhancement, Region Search

#784 - Support larger region searches

Issue - State: open - Opened by heralden over 2 years ago
Labels: enhancement, Region Search

#783 - Use Cypress parallelization

Issue - State: open - Opened by heralden over 2 years ago
Labels: Build-CI-Testing, High priority

#782 - QB: Fix crash caused by adding descendent of subclass constraint

Pull Request - State: closed - Opened by heralden over 2 years ago - 1 comment

#781 - Crash caused by adding descendent of subclass constraint

Issue - State: closed - Opened by heralden over 2 years ago
Labels: bug, Query Builder

#780 - Autofocus search input on search page

Issue - State: closed - Opened by heralden over 2 years ago
Labels: enhancement, Search

#779 - Make Back To Template button return to previously viewed template

Pull Request - State: closed - Opened by heralden over 2 years ago

#778 - Linking in to ID resolver with portal.do endpoint

Pull Request - State: closed - Opened by heralden over 2 years ago - 1 comment

#777 - Upload: Open first present tab when matches tab not present

Issue - State: closed - Opened by heralden over 2 years ago
Labels: bug, List upload / ID resolver

#776 - QB improvements based on pombemine feedback

Pull Request - State: closed - Opened by heralden over 2 years ago

#775 - Convey clearer empty classes in data browser

Issue - State: closed - Opened by heralden over 2 years ago
Labels: enhancement, Query Builder

#774 - Remove outer join when related class is removed

Issue - State: closed - Opened by heralden over 2 years ago
Labels: bug, Query Builder

#773 - error rerunning existing query

Issue - State: closed - Opened by ValWood over 2 years ago - 6 comments

#772 - Fix ordering of columns in bar chart widgets

Issue - State: closed - Opened by heralden over 2 years ago - 1 comment
Labels: bug, Results page

#771 - Use displayName in Data Browser

Issue - State: closed - Opened by heralden over 2 years ago
Labels: bug, Query Builder

#770 - Do not show empty classes in QB root class dropdown

Issue - State: closed - Opened by heralden over 2 years ago
Labels: enhancement, Query Builder

#769 - Distinguish reverse references

Issue - State: closed - Opened by heralden over 2 years ago
Labels: enhancement, Query Builder

#768 - Make Back To Templates button return to previously viewed template

Issue - State: closed - Opened by heralden over 2 years ago
Labels: enhancement, Results page, Templates

#764 - Improve QB outer join help text

Issue - State: closed - Opened by heralden almost 3 years ago
Labels: enhancement

#763 - Support creating templates

Pull Request - State: closed - Opened by heralden almost 3 years ago

#762 - Report page layout config can't grow beyond a specific size

Issue - State: closed - Opened by heralden almost 3 years ago
Labels: bug

#760 - More inclusive templates filter

Issue - State: closed - Opened by heralden almost 3 years ago
Labels: enhancement, Templates

#757 - Too many fields for Gene and Protein summary

Issue - State: closed - Opened by rachellyne almost 3 years ago
Labels: enhancement, Report page

#755 - Recently created lists doesn't work

Issue - State: closed - Opened by rachellyne almost 3 years ago
Labels: bug

#752 - Login doesn't work

Issue - State: closed - Opened by nuin about 3 years ago - 1 comment

#741 - Web service URL button for template

Issue - State: closed - Opened by heralden about 3 years ago
Labels: Templates, Medium priority

#737 - Public only lists page filter gives no results for admin

Issue - State: closed - Opened by heralden about 3 years ago
Labels: Lists page, Medium priority

#735 - Creating a new endpoint similar to the legacy portal.do

Issue - State: closed - Opened by danielabutano about 3 years ago - 12 comments
Labels: Medium priority

#719 - Login using Google/Elixir should be enabled only in the default mine

Issue - State: closed - Opened by danielabutano over 3 years ago
Labels: bug, authentication

#705 - Improve SEO

Issue - State: open - Opened by heralden over 3 years ago
Labels: High priority

#699 - Add the functionality to tag classes

Issue - State: open - Opened by danielabutano over 3 years ago
Labels: Query Builder, High priority

#689 - Support advanced portal link-in

Issue - State: open - Opened by heralden over 3 years ago
Labels: Medium priority

#662 - Hide empty classes from the QB Model Browser

Issue - State: open - Opened by heralden over 3 years ago - 4 comments
Labels: Query Builder, InterMine backend, Medium priority

#642 - Limit length of report summary text and provide "More" button

Issue - State: closed - Opened by heralden over 3 years ago
Labels: enhancement, Report page, Medium priority

#639 - Reset button for template constraints

Issue - State: closed - Opened by heralden over 3 years ago
Labels: enhancement, Templates, Medium priority

#633 - Improve template filter responsiveness and fuzziness

Issue - State: closed - Opened by heralden over 3 years ago
Labels: Templates, Medium priority

#610 - Support loop constraint in query builder

Issue - State: open - Opened by heralden over 3 years ago
Labels: Query Builder

#545 - A link to upload page from My Data/Lists page

Issue - State: open - Opened by heralden about 4 years ago - 1 comment
Labels: Lists page, UI/UX, usertesting

#533 - Remove or replace Travis CI

Issue - State: closed - Opened by heralden over 4 years ago - 1 comment
Labels: Build-CI-Testing

#514 - Explain requirements for being present in the mine switcher

Issue - State: closed - Opened by heralden over 4 years ago - 1 comment
Labels: UI/UX

#502 - Do not display query hash in list results page

Issue - State: closed - Opened by heralden over 4 years ago - 1 comment

#460 - Support creating templates

Issue - State: closed - Opened by heralden over 4 years ago - 1 comment
Labels: Templates, Medium priority

#364 - A new workflow for interacting with lists

Issue - State: open - Opened by heralden over 5 years ago - 2 comments
Labels: Discussion

GitHub / intermine/bluegenes issues and pull requests