Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / int-brain-lab/ibllib issues and pull requests

#638 - Deprecate `processing.bincount2D` (moved to `iblutil`)

Pull Request - State: open - Opened by chris-langfield about 1 year ago - 1 comment

#637 - Iblrigv8 extractions

Pull Request - State: open - Opened by k1o0 about 1 year ago

#636 - Chronic insertions

Pull Request - State: open - Opened by mayofaulkner about 1 year ago

#635 - Atlas API documentation

Issue - State: open - Opened by k1o0 over 1 year ago

#633 - Atlas API documentation

Pull Request - State: open - Opened by k1o0 over 1 year ago - 1 comment

#632 - Mesoscope brain location

Pull Request - State: closed - Opened by k1o0 over 1 year ago

#631 - Iblrigv8

Pull Request - State: closed - Opened by oliche over 1 year ago

#630 - Test loading suite2p GUI from ROIData.raw

Issue - State: open - Opened by k1o0 over 1 year ago

#629 - Release mesoscopeBrainLocation branch

Issue - State: open - Opened by k1o0 over 1 year ago

#628 - Mesoscope documentation

Issue - State: open - Opened by k1o0 over 1 year ago
Labels: NewDatasetTypeProposal

#627 - Photometry witten

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#626 - Documentation atlas

Pull Request - State: closed - Opened by GaelleChapuis over 1 year ago

#624 - Increase test coverage in mesoscope_tasks

Issue - State: closed - Opened by k1o0 over 1 year ago

#623 - Deprecate velocity, velocity_smothed, and last_movement_onset

Pull Request - State: closed - Opened by k1o0 over 1 year ago - 2 comments

#622 - Deprecate `brainbox.processing.bincount2D`

Pull Request - State: closed - Opened by chris-langfield over 1 year ago - 1 comment

#621 - make sure rest cache is cleared before searching for already register…

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago - 2 comments

#620 - Deprecate pyschofit in favour of psychofit pip package

Pull Request - State: closed - Opened by k1o0 over 1 year ago - 1 comment

#619 - Add psychofit as dependency lib

Issue - State: open - Opened by k1o0 over 1 year ago - 1 comment

#618 - Experiment description merge

Pull Request - State: closed - Opened by k1o0 over 1 year ago

#617 - Develop

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#616 - Swanson split

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#615 - Add `channel_labels.npy` from KS2 output to `_kilosort_raw.output.tar`

Issue - State: closed - Opened by chris-langfield over 1 year ago - 1 comment
Labels: enhancement

#614 - Aggregate docs fix

Pull Request - State: closed - Opened by k1o0 over 1 year ago - 1 comment

#613 - Atlas fix

Pull Request - State: closed - Opened by oliche over 1 year ago

#612 - Loading trial documentation

Pull Request - State: closed - Opened by GaelleChapuis over 1 year ago - 1 comment

#611 - Mesoscope

Pull Request - State: closed - Opened by k1o0 over 1 year ago

#610 - Release mesoscope branch

Issue - State: closed - Opened by k1o0 over 1 year ago

#609 - Ignore imaging folders not in experiment description

Issue - State: closed - Opened by k1o0 over 1 year ago - 1 comment
Labels: enhancement, question

#608 - ONEv2

Pull Request - State: closed - Opened by k1o0 over 1 year ago

#607 - Register multiple server statuses in alyx database for monitoring

Issue - State: open - Opened by oliche over 1 year ago - 1 comment

#606 - add quiescence period extracted file

Pull Request - State: closed - Opened by oliche over 1 year ago

#605 - fix for training line plots

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#604 - use session_path not session

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#602 - Allen cache loc

Pull Request - State: closed - Opened by k1o0 over 1 year ago

#601 - Develop

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#600 - Training status

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#599 - Mesoscope preprocess output QC

Issue - State: open - Opened by k1o0 over 1 year ago

#598 - Fix frame 2ttl v2 for iblrig v7

Issue - State: open - Opened by oliche over 1 year ago

#596 - Neuromodulators

Pull Request - State: closed - Opened by oliche over 1 year ago

#595 - Adding a field on Alyx to query for subject training status

Issue - State: closed - Opened by oliche over 1 year ago - 3 comments

#594 - Fix passive ntrials

Pull Request - State: closed - Opened by juhuntenburg over 1 year ago

#593 - option to add mask to swanson

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#591 - Hotfix/2.21.3

Pull Request - State: closed - Opened by oliche over 1 year ago

#590 - Mesoscope: fix DAQ noise

Issue - State: closed - Opened by k1o0 over 1 year ago

#589 - Fix mesoscope sessions

Issue - State: open - Opened by k1o0 over 1 year ago

#588 - Mesoscope Lossless Compression

Issue - State: open - Opened by k1o0 over 1 year ago

#587 - Mesoscope suite2P task

Issue - State: open - Opened by k1o0 over 1 year ago - 1 comment

#586 - Training fix

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#585 - Make DAQ trials extractors independent of protocol

Issue - State: open - Opened by k1o0 over 1 year ago

#584 - Mesoscope: register FOVs in Alyx

Issue - State: closed - Opened by k1o0 over 1 year ago

#583 - HOTFIX: floferlab multiple file records

Pull Request - State: closed - Opened by k1o0 over 1 year ago

#582 - Add support for other camera sync labels

Issue - State: closed - Opened by k1o0 over 1 year ago

#581 - Add support for multiple raw_imaging_data collections

Issue - State: closed - Opened by k1o0 over 1 year ago
Labels: question

#580 - Develop

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#579 - fixes to atlas mappings

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#578 - Duplicate file records for floferlab

Issue - State: open - Opened by k1o0 over 1 year ago

#577 - New sessions on mainenlab server not extracting

Issue - State: open - Opened by k1o0 over 1 year ago

#576 - Mesoscope: extract imaging timestamps

Issue - State: closed - Opened by k1o0 over 1 year ago

#575 - Tests for timeline raw DAQ loaders

Issue - State: closed - Opened by k1o0 over 1 year ago

#574 - Update surgeries JSON field with window coordinates

Issue - State: closed - Opened by k1o0 over 1 year ago

#573 - Raw mesocope data structure

Issue - State: closed - Opened by k1o0 over 1 year ago - 1 comment

#572 - Save mesoscope suite2p data as blob

Issue - State: open - Opened by k1o0 over 1 year ago

#571 - video params for belly cam

Issue - State: open - Opened by k1o0 over 1 year ago

#570 - WIP Mesoscope

Pull Request - State: closed - Opened by juhuntenburg over 1 year ago

#569 - Swanson vector

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago

#568 - Swanson vector

Pull Request - State: closed - Opened by mayofaulkner over 1 year ago - 1 comment

#567 - Chained video qc

Pull Request - State: closed - Opened by k1o0 over 1 year ago

#566 - URL problem while retrieving file from flatiron

Issue - State: closed - Opened by joacorapela over 1 year ago - 2 comments

#565 - Regions volume

Pull Request - State: closed - Opened by oliche almost 2 years ago

#564 - Table index error from 'list_datasets(...)' when ONE sets 'cache_dir'

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago - 2 comments

#563 - Where is iblenv.yaml?

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago

#561 - Ensure .gpu_lock file not effected by task tests

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago

#560 - Streamer returns `float32` instead of `int16`

Issue - State: open - Opened by alejoe91 almost 2 years ago - 1 comment

#559 - delete notes after test

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago

#558 - Develop

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago

#557 - Chained protocols

Pull Request - State: closed - Opened by k1o0 almost 2 years ago

#556 - fix for metrics computation with merge/ split clusters

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago

#555 - behavior data release page

Pull Request - State: closed - Opened by GaelleChapuis almost 2 years ago

#554 - Fix mix up

Pull Request - State: closed - Opened by juhuntenburg almost 2 years ago

#553 - Docs

Pull Request - State: closed - Opened by juhuntenburg almost 2 years ago

#552 - Atlas

Pull Request - State: closed - Opened by oliche almost 2 years ago - 1 comment

#551 - Correctly parse spikesorting version strings

Pull Request - State: closed - Opened by k1o0 almost 2 years ago

#550 - Consolidate sessions

Pull Request - State: closed - Opened by k1o0 almost 2 years ago

#549 - Docs

Pull Request - State: closed - Opened by oliche almost 2 years ago

#548 - Specify download location for `BrainAtlas` objects

Issue - State: open - Opened by jsiegle almost 2 years ago - 3 comments

#547 - Exp dec transfer script

Pull Request - State: closed - Opened by k1o0 almost 2 years ago

#546 - Develop

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago

#545 - Installation error

Issue - State: open - Opened by bendichter almost 2 years ago

#544 - Atlas features

Pull Request - State: closed - Opened by oliche almost 2 years ago

#543 - print_progress' from 'ibllib.misc

Issue - State: closed - Opened by MCangelov almost 2 years ago - 1 comment

#542 - update check copy complete for cases where experiment description file exists

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago - 3 comments

#541 - Cam qc explicit

Pull Request - State: closed - Opened by juhuntenburg almost 2 years ago

#540 - fix get_logger -> setup_logger

Pull Request - State: closed - Opened by timsainb almost 2 years ago - 3 comments

#539 - Logging refactor

Pull Request - State: closed - Opened by k1o0 almost 2 years ago