Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / int-brain-lab/iblenv issues and pull requests

#384 - [EXTRACT]value error of path using load_spike.sorting

Issue - State: closed - Opened by hcao37 about 1 month ago - 8 comments

#383 - [Bug report] Cannot extract subjectsTrials due to memory issues

Issue - State: closed - Opened by k1o0 about 1 month ago - 1 comment
Labels: bug

#382 - [Usage question] - how to access the public IBL database after setting up the internal database

Issue - State: closed - Opened by bindeel about 2 months ago - 7 comments
Labels: question

#381 - Python 3.8 end of life

Issue - State: open - Opened by oliche about 2 months ago

#380 - add photometry loading example

Pull Request - State: closed - Opened by mayofaulkner 2 months ago

#379 - Review ephys recording script and documentation

Issue - State: closed - Opened by k1o0 3 months ago - 3 comments

#378 - Linux service / `multiprocessing` bug in spike sorting

Issue - State: open - Opened by chris-langfield 4 months ago - 1 comment

#377 - Run pykilosort on hybrid UHD dataset

Issue - State: open - Opened by chris-langfield 4 months ago - 1 comment

#376 - Clean up whiterussian

Issue - State: closed - Opened by k1o0 4 months ago - 1 comment

#374 - Whitelist ZI IPs

Issue - State: closed - Opened by k1o0 5 months ago - 3 comments

#372 - Write post-mortem of spike sorting re-run

Issue - State: closed - Opened by chris-langfield 6 months ago - 1 comment

#371 - Docs

Pull Request - State: closed - Opened by mayofaulkner 6 months ago

#370 - Remove need to copy certs

Issue - State: closed - Opened by k1o0 6 months ago

#369 - Allen Neuropixel Course

Issue - State: closed - Opened by mayofaulkner 6 months ago

#367 - Docs

Pull Request - State: closed - Opened by mayofaulkner 7 months ago

#366 - Screen position from wheel dynamics example

Issue - State: closed - Opened by mayofaulkner 7 months ago - 1 comment

#365 - Add iblutil to iblenv docs

Issue - State: closed - Opened by k1o0 8 months ago
Labels: documentation

#364 - Flake documentation for ibllib.qc package

Issue - State: closed - Opened by k1o0 8 months ago - 2 comments
Labels: documentation

#363 - Nate question on how to retrieve first timestamps

Issue - State: closed - Opened by GaelleChapuis 8 months ago - 1 comment

#362 - Patch trials < v5

Issue - State: closed - Opened by k1o0 9 months ago - 1 comment

#361 - Docs

Pull Request - State: closed - Opened by oliche 10 months ago

#360 - Change log page and emails for external users

Issue - State: closed - Opened by juhuntenburg 10 months ago - 3 comments

#359 - [Bug report] - cannot load wheel_dlc_viewer

Issue - State: closed - Opened by naureeng 10 months ago - 2 comments
Labels: bug

#358 - [Bug report] - Missing Alyx data on Flatiron

Issue - State: closed - Opened by k1o0 10 months ago - 2 comments

#357 - [Bug report] - Reshape error on ephys data load

Issue - State: closed - Opened by k1o0 11 months ago - 1 comment
Labels: bug

#356 - AWS certificates expire August 2024

Issue - State: closed - Opened by juhuntenburg 11 months ago - 2 comments

#355 - Warn external users that passive data is released

Issue - State: closed - Opened by GaelleChapuis 11 months ago - 1 comment

#354 - on-call: LFP Neurostars

Issue - State: closed - Opened by GaelleChapuis 11 months ago

#353 - Test support issue

Issue - State: open - Opened by chris-langfield 12 months ago
Labels: bug

#352 - Non public loading documentation (e.g photometry, mesoscope)

Issue - State: closed - Opened by k1o0 12 months ago
Labels: documentation

#351 - `churchland_learninglifespan` alignment errors

Issue - State: closed - Opened by anne-urai 12 months ago - 3 comments

#350 - Review Alyx report page, streamline QC check

Issue - State: closed - Opened by juhuntenburg about 1 year ago - 7 comments

#349 - [Bug report] CUDA crashes in Pykilosort post-processing

Issue - State: closed - Opened by chris-langfield about 1 year ago - 3 comments
Labels: bug

#348 - Session completion status on Alyx for dynamic pipeline

Issue - State: open - Opened by oliche about 1 year ago
Labels: enhancement

#347 - Free up space on Steinmetz lab server

Issue - State: closed - Opened by k1o0 about 1 year ago

#346 - [Documentation] Better documentation on querying spike data

Issue - State: closed - Opened by k1o0 about 1 year ago - 2 comments

#345 - Atlas imports

Pull Request - State: closed - Opened by mayofaulkner about 1 year ago

#344 - [EXTRACT] Flat/zero waveforms in PyKS template extraction

Issue - State: closed - Opened by chris-langfield about 1 year ago - 6 comments

#343 - [EXTRACT] spike_times.npy seems to be missing from some sessions?

Issue - State: closed - Opened by chrisan97 over 1 year ago - 1 comment

#342 - Documentation on atlas

Pull Request - State: closed - Opened by GaelleChapuis over 1 year ago

#341 - brainwidemap 0.1.0 requires pandas<2.0, but you have pandas 2.0.2

Issue - State: closed - Opened by mschart over 1 year ago - 1 comment
Labels: bug

#340 - Copy strategy GUI + acquisition description

Issue - State: closed - Opened by k1o0 over 1 year ago - 1 comment

#339 - [Usage question] - How to work with pids and LazyIds?

Issue - State: closed - Opened by chrisan97 over 1 year ago - 2 comments
Labels: question

#338 - Provide p_Left variable for pregenerated ephys session blocks

Issue - State: closed - Opened by oliche over 1 year ago - 3 comments

#337 - Prior paper code review

Issue - State: open - Opened by oliche over 1 year ago - 2 comments

#336 - [Bug report] - `PyQt5` pip version-finding issue in `iblenv` requirements installation

Issue - State: closed - Opened by chris-langfield over 1 year ago - 4 comments
Labels: bug

#335 - [Bug report] - ibllib install hangs when trying to build pyqt5 wheel

Issue - State: closed - Opened by oliche over 1 year ago
Labels: bug

#334 - Yizi code review and clusterless decoding submission

Issue - State: closed - Opened by oliche over 1 year ago - 1 comment

#333 - Atlas example on Remapping - how to get the Beryl area volume

Issue - State: closed - Opened by oliche over 1 year ago - 1 comment

#331 - Extract new datasets: stim on trigger and quiescence period

Issue - State: closed - Opened by oliche over 1 year ago - 1 comment

#330 - Register the Clusters tables in Alyx

Issue - State: open - Opened by oliche over 1 year ago

#328 - Datajoint retirement - round-up AWS instances

Issue - State: closed - Opened by oliche over 1 year ago - 2 comments

#326 - behavior data release page

Pull Request - State: closed - Opened by GaelleChapuis almost 2 years ago

#325 - Docs

Pull Request - State: closed - Opened by juhuntenburg almost 2 years ago

#324 - Crossreferencing NP data and AllenSDK connectivity matrices

Issue - State: closed - Opened by MariaKCodes about 2 years ago - 2 comments

#323 - Docs

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago

#322 - [Bug report] - Failure to parse pykilosort version

Issue - State: closed - Opened by k1o0 almost 2 years ago
Labels: bug

#321 - Docs

Pull Request - State: closed - Opened by mayofaulkner almost 2 years ago

#320 - Why is Conda environment building no longer supported?

Issue - State: closed - Opened by berkgercek about 2 years ago - 1 comment
Labels: bug

#319 - [Bug report] - Stop Iteration error when instantiation AllenAtlas

Issue - State: closed - Opened by oliche over 2 years ago - 2 comments
Labels: bug

#318 - iblenv update: ERROR: Cannot uninstall 'llvmlite'

Issue - State: closed - Opened by mschart over 2 years ago - 2 comments
Labels: bug, awaiting-feedback

#317 - Revert "bumping PyQt5 to 5.14.2"

Pull Request - State: closed - Opened by micheleangelofabbri over 2 years ago - 1 comment

#316 - bumping PyQt5 to 5.14.2

Pull Request - State: closed - Opened by micheleangelofabbri over 2 years ago

#315 - [Bug report] -list index out of range, 824cf03d-4012-4ab1-b499-c83a92c5589e', 'probe00'

Issue - State: closed - Opened by yanliangshi over 2 years ago - 4 comments
Labels: bug, awaiting-feedback

#314 - [Bug report] - Cannot load trials. variables in some sessions. HTTP Error 404: Not Found

Issue - State: closed - Opened by yanliangshi over 2 years ago - 7 comments
Labels: bug, awaiting-feedback

#313 - [Bug report] - HTTP Forbidden error when loading repro-ephys data from OpenALyx

Issue - State: closed - Opened by anne-urai over 2 years ago - 5 comments
Labels: bug, working-on-it

#312 - Public

Pull Request - State: closed - Opened by mayofaulkner over 2 years ago

#310 - iblenv docker image

Pull Request - State: closed - Opened by iamamutt over 2 years ago

#309 - Issue with opening files on the IBL ENV GUI

Issue - State: open - Opened by antaramaj16 over 2 years ago - 9 comments
Labels: awaiting-feedback

#307 - [Usage question] - How to access the json field of the session / probe

Issue - State: closed - Opened by GaelleChapuis over 2 years ago - 2 comments
Labels: question

#306 - [Bug report] - one.load HTTP Error 401: Unauthorized

Issue - State: closed - Opened by oliche over 2 years ago - 2 comments
Labels: bug, awaiting-feedback

#305 - [Bug report] - TypeError: a bytes-like object is required, not 'str'

Issue - State: open - Opened by dervinism over 2 years ago - 9 comments
Labels: bug

#304 - 'failed to load remote cache' and 404 errors

Issue - State: closed - Opened by noamroth over 2 years ago - 2 comments
Labels: bug

#303 - ONE - openalyx - Http error invalid token

Issue - State: closed - Opened by oliche over 2 years ago - 2 comments
Labels: bug

#302 - [Bug report] - cannot load trials

Issue - State: closed - Opened by naureeng over 2 years ago - 3 comments
Labels: bug

#301 - [Bug report] - Unable to upload histology to Alyx

Issue - State: open - Opened by khanalanup over 2 years ago
Labels: bug

#300 - [Feature request] - Make one.search details more similar between modes

Issue - State: closed - Opened by k1o0 over 2 years ago
Labels: enhancement

#299 - [Feature request] - ONE IDs not recorded in SpikeSortingLoader

Issue - State: closed - Opened by k1o0 over 2 years ago - 1 comment
Labels: enhancement

#298 - [Bug report] - Unable to load remote cache table

Issue - State: closed - Opened by k1o0 over 2 years ago - 1 comment
Labels: bug, working-on-it

#297 - Unable to load data onto IBL ENV GUI

Issue - State: open - Opened by antaramaj16 over 2 years ago - 8 comments
Labels: enhancement, external

#296 - Issue with saving AP & LF RMSMAP

Issue - State: open - Opened by antaramaj16 over 2 years ago
Labels: external

#295 - [Bug report] - Slow performance of ONE on M1 mac native python (not urgent)

Issue - State: open - Opened by berkgercek over 2 years ago - 2 comments
Labels: bug

#294 - [Postmortem report] Weekend Alyx Downtime

Issue - State: closed - Opened by micheleangelofabbri over 2 years ago - 1 comment
Labels: postmortem

#293 - [Postmortem report] Alyx network issue

Issue - State: closed - Opened by micheleangelofabbri over 2 years ago
Labels: postmortem

#292 - SpikeSortingLoader sl.load_spike_sorting() halts when used in loop

Issue - State: open - Opened by mschart over 2 years ago
Labels: bug

#291 - [Feature request] - Allow adding trajectory estimates by non-root logins

Issue - State: open - Opened by guidomeijer over 2 years ago - 1 comment
Labels: enhancement

#290 - [Bug report] - certificate verify failed: certificate has expired

Issue - State: closed - Opened by k1o0 over 2 years ago
Labels: bug

#288 - Postmortem issue template

Pull Request - State: closed - Opened by micheleangelofabbri over 2 years ago

#287 - Spike Sorting Error

Issue - State: closed - Opened by Petrina-Lau over 2 years ago - 2 comments
Labels: bug

#286 - Recording issue

Issue - State: open - Opened by Petrina-Lau over 2 years ago

#285 - [Bug report] - AssertionError: Duplicate eids in sessions table

Issue - State: closed - Opened by julienboussard over 2 years ago - 1 comment
Labels: bug

#284 - install ibllib as pip -e instead of conda develop

Pull Request - State: closed - Opened by oliche almost 3 years ago - 1 comment

#282 - [Bug report] - cannot connect to ONE

Issue - State: closed - Opened by naureeng almost 3 years ago - 13 comments
Labels: bug, awaiting-feedback