instadeepai/nucleotide-transformer issues and pull requests

#33 - Can I simply take 'CLS' token as my sequence representations?

Issue - State: closed - Opened by Azai-yx about 1 year ago - 1 comment

#33 - Can I simply take 'CLS' token as my sequence representations?

Issue - State: closed - Opened by Azai-yx about 1 year ago - 1 comment

#32 - Prediction using fine-tined model with LoRA

Issue - State: closed - Opened by FadelBerakdar over 1 year ago - 1 comment

#32 - Prediction using fine-tined model with LoRA

Issue - State: closed - Opened by FadelBerakdar over 1 year ago - 1 comment

#31 - 30 update readmetxt

Pull Request - State: closed - Opened by dallatt over 1 year ago

#31 - 30 update readmetxt

Pull Request - State: closed - Opened by dallatt over 1 year ago

#30 - Update README.txt

Issue - State: closed - Opened by dallatt over 1 year ago

#30 - Update README.txt

Issue - State: closed - Opened by dallatt over 1 year ago

#29 - 28 fix v2 api

Pull Request - State: closed - Opened by dallatt over 1 year ago

#29 - 28 fix v2 api

Pull Request - State: closed - Opened by dallatt over 1 year ago

#28 - Fix v2 api

Issue - State: closed - Opened by dallatt over 1 year ago

#28 - Fix v2 api

Issue - State: closed - Opened by dallatt over 1 year ago

#27 - Performance on RNA sequences

Issue - State: closed - Opened by vuhongai over 1 year ago - 1 comment

#27 - Performance on RNA sequences

Issue - State: closed - Opened by vuhongai over 1 year ago - 1 comment

#26 - Tutorial no longer works with the v2 models

Issue - State: closed - Opened by davidhbrann over 1 year ago - 1 comment

#26 - Tutorial no longer works with the v2 models

Issue - State: closed - Opened by davidhbrann over 1 year ago - 1 comment

#25 - hyenadna evaluation

Issue - State: closed - Opened by wawpaopao over 1 year ago - 1 comment

#25 - hyenadna evaluation

Issue - State: closed - Opened by wawpaopao over 1 year ago - 1 comment

#24 - model size mismatch

Issue - State: closed - Opened by Azai-yx over 1 year ago - 2 comments

#24 - model size mismatch

Issue - State: closed - Opened by Azai-yx over 1 year ago - 2 comments

#23 - feat: Add missing modules

Pull Request - State: closed - Opened by dallatt over 1 year ago

#23 - feat: Add missing modules

Pull Request - State: closed - Opened by dallatt over 1 year ago

#22 - Fix missing module

Issue - State: closed - Opened by dallatt over 1 year ago

#22 - Fix missing module

Issue - State: closed - Opened by dallatt over 1 year ago

#21 - ModuleNotFoundError: No module named 'nucleotide_transformer.utils'

Issue - State: closed - Opened by nehmea over 1 year ago - 2 comments

#21 - ModuleNotFoundError: No module named 'nucleotide_transformer.utils'

Issue - State: closed - Opened by nehmea over 1 year ago - 2 comments

#20 - feat: Adapt README to new models

Pull Request - State: closed - Opened by dallatt over 1 year ago

#20 - feat: Adapt README to new models

Pull Request - State: closed - Opened by dallatt over 1 year ago

#19 - Adapt README

Issue - State: closed - Opened by dallatt over 1 year ago

#19 - Adapt README

Issue - State: closed - Opened by dallatt over 1 year ago

#18 - 17 add nt v2 models

Pull Request - State: closed - Opened by dallatt over 1 year ago - 1 comment

#18 - 17 add nt v2 models

Pull Request - State: closed - Opened by dallatt over 1 year ago - 1 comment

#17 - Add NT v2 models

Issue - State: closed - Opened by dallatt over 1 year ago

#17 - Add NT v2 models

Issue - State: closed - Opened by dallatt over 1 year ago

#16 - 2 sequences as input

Issue - State: closed - Opened by hhy-joseph over 1 year ago - 1 comment

#16 - 2 sequences as input

Issue - State: closed - Opened by hhy-joseph over 1 year ago - 1 comment

#15 - Is the test split available?

Issue - State: closed - Opened by exnx almost 2 years ago

#15 - Is the test split available?

Issue - State: closed - Opened by exnx almost 2 years ago

#14 - Huggingface checkpoints

Issue - State: closed - Opened by fteufel almost 2 years ago - 3 comments

#14 - Huggingface checkpoints

Issue - State: closed - Opened by fteufel almost 2 years ago - 3 comments

#13 - Pre-training on plant genomes

Issue - State: closed - Opened by zhaijj almost 2 years ago - 3 comments

#13 - Pre-training on plant genomes

Issue - State: closed - Opened by zhaijj almost 2 years ago - 3 comments

#12 - Change default max positions

Pull Request - State: closed - Opened by dallatt almost 2 years ago - 1 comment

#12 - Change default max positions

Pull Request - State: closed - Opened by dallatt almost 2 years ago - 1 comment

#11 - Fix default `max_positions` in `get_pretrained_model`

Issue - State: closed - Opened by GRichard513 almost 2 years ago

#11 - Fix default `max_positions` in `get_pretrained_model`

Issue - State: closed - Opened by GRichard513 almost 2 years ago

#10 - 9 clarifying context length and readme

Pull Request - State: closed - Opened by dallatt almost 2 years ago - 1 comment

#10 - 9 clarifying context length and readme

Pull Request - State: closed - Opened by dallatt almost 2 years ago - 1 comment

#9 - clarifying context length and readme

Issue - State: closed - Opened by dallatt almost 2 years ago

#9 - clarifying context length and readme

Issue - State: closed - Opened by dallatt almost 2 years ago

#8 - docs: fix 's with caron' in name

Pull Request - State: closed - Opened by BioGeek almost 2 years ago

#7 - Clarifications about context size

Issue - State: closed - Opened by gonzalobenegas almost 2 years ago - 2 comments

#7 - Clarifications about context size

Issue - State: closed - Opened by gonzalobenegas almost 2 years ago - 2 comments

#6 - Hugging Face Hub

Issue - State: closed - Opened by gonzalobenegas almost 2 years ago - 2 comments

#6 - Hugging Face Hub

Issue - State: closed - Opened by gonzalobenegas almost 2 years ago - 2 comments

#5 - Fine-tune codes

Issue - State: closed - Opened by ChongWu-Biostat almost 2 years ago - 1 comment

#5 - Fine-tune codes

Issue - State: closed - Opened by ChongWu-Biostat almost 2 years ago - 1 comment

#4 - Issues with embedding with 2B5 models

Issue - State: closed - Opened by frederikkemarin almost 2 years ago - 5 comments

#4 - Issues with embedding with 2B5 models

Issue - State: closed - Opened by frederikkemarin almost 2 years ago - 5 comments

#3 - Fine-tune models availability

Issue - State: closed - Opened by luciabarb almost 2 years ago - 1 comment

#3 - Fine-tune models availability

Issue - State: closed - Opened by luciabarb almost 2 years ago - 1 comment

#2 - 1 first working version of the code

Pull Request - State: closed - Opened by ranzenTom almost 2 years ago

#2 - 1 first working version of the code

Pull Request - State: closed - Opened by ranzenTom almost 2 years ago

#1 - first working version of the code

Issue - State: closed - Opened by ranzenTom almost 2 years ago

#1 - first working version of the code

Issue - State: closed - Opened by ranzenTom almost 2 years ago

GitHub / instadeepai/nucleotide-transformer issues and pull requests