Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / insitro/redun issues and pull requests

#102 - fix links between doc pages

Pull Request - State: closed - Opened by nkeriks 25 days ago - 1 comment

#101 - make REDUN_PROG configurable

Issue - State: closed - Opened by jay-bhambhani about 1 month ago - 2 comments

#99 - More elaborate mechanism to detect code changes?

Issue - State: open - Opened by codethief 3 months ago - 3 comments

#98 - Redun caching logic for a master_task

Issue - State: open - Opened by njbernstein 4 months ago - 2 comments

#96 - Windows compatibility

Issue - State: closed - Opened by paulduf 4 months ago - 2 comments

#95 - Specify vcpu and memory as resourceRequirements in AWS Batch executor

Pull Request - State: closed - Opened by aotimme 4 months ago - 1 comment

#94 - Dryrun does not yield expected output

Issue - State: closed - Opened by aksarkar 6 months ago - 2 comments

#93 - postgresql database doesn't upgrade version when using Scheduler.

Issue - State: closed - Opened by njbernstein 6 months ago - 6 comments

#92 - Scheduler limits bugfix

Pull Request - State: closed - Opened by naegelyd-insitro 7 months ago - 1 comment

#91 - Scheduler throws KeyError

Issue - State: closed - Opened by lucasavila00 7 months ago

#89 - Local docker problem when running conda example

Issue - State: closed - Opened by tiendu 10 months ago - 2 comments

#87 - How to isolate tasks in their own directory?

Issue - State: open - Opened by Asutu about 1 year ago

#86 - pytest.sh

Pull Request - State: open - Opened by gabriel-v about 1 year ago

#85 - One-liner to run pytest and lint under Docker

Issue - State: open - Opened by gabriel-v about 1 year ago

#84 - Pg executor

Pull Request - State: open - Opened by gabriel-v about 1 year ago - 6 comments

#83 - ignore artifacts left over by py.test

Pull Request - State: open - Opened by gabriel-v about 1 year ago

#82 - pin old version for textual

Pull Request - State: closed - Opened by gabriel-v about 1 year ago - 1 comment

#81 - ImportError: Package 'textual.widgets' has no class 'TextLog'

Issue - State: closed - Opened by gabriel-v about 1 year ago - 1 comment

#80 - script() does not accept argument list, only works with valid UTF-8 string

Issue - State: open - Opened by gabriel-v about 1 year ago - 2 comments

#79 - File/Dir - cannot use path made of non-utf8 bytestrings

Issue - State: open - Opened by gabriel-v about 1 year ago

#78 - PostgreSQL Queue Executor (Distributed executor without Amazon/k8s)

Issue - State: open - Opened by gabriel-v about 1 year ago - 1 comment

#77 - Configure docker executor volumes from redun.ini

Issue - State: closed - Opened by aksarkar about 1 year ago - 2 comments

#76 - Merge upstream

Pull Request - State: closed - Opened by ricomnl about 1 year ago

#75 - How to execute in local containers ?

Issue - State: open - Opened by Melkaz over 1 year ago - 2 comments

#74 - add compute query to get memory and cpu defaults

Pull Request - State: closed - Opened by MSamman over 1 year ago - 3 comments

#73 - split out version into it's own module

Pull Request - State: closed - Opened by MSamman over 1 year ago - 2 comments

#72 - Fix link on the "Scheduling redun workflows" docs page

Pull Request - State: closed - Opened by wfondrie over 1 year ago

#71 - Update stale hyperlink in design.md

Pull Request - State: closed - Opened by dekdaas over 1 year ago

#70 - Scatter-merge operation in redun?

Issue - State: closed - Opened by PhilPalmer over 1 year ago - 4 comments

#69 - [EXPLORE] Exploring moving File staging logic to Executors

Pull Request - State: closed - Opened by mattrasmus over 1 year ago - 3 comments

#68 - GCP batch support v2

Pull Request - State: closed - Opened by mattrasmus over 1 year ago - 3 comments

#67 - [feature request] add option to pass environment variables for script task

Issue - State: open - Opened by tandav over 1 year ago - 3 comments

#66 - GCP batch support

Pull Request - State: closed - Opened by MSamman over 1 year ago - 6 comments

#65 - Job array causes error message on older versions of k8s

Issue - State: open - Opened by dakoner over 1 year ago

#64 - Changed cli, file and k8s files

Pull Request - State: closed - Opened by ricomnl over 1 year ago

#63 - Remove develop mode for installing redun during docs build

Pull Request - State: closed - Opened by mattrasmus over 1 year ago

#62 - CVE-2007-4559 Patch

Pull Request - State: closed - Opened by TrellixVulnTeam almost 2 years ago - 1 comment

#61 - Pass AWS_DEFAULT_REGION env variable to container

Pull Request - State: closed - Opened by jsdir almost 2 years ago - 3 comments

#60 - Fix import statements with lowercase config

Pull Request - State: closed - Opened by danielecook almost 2 years ago

#59 - Overflow Error with Pickle Protocol 3

Issue - State: open - Opened by TylerSpears about 2 years ago - 2 comments

#58 - Please explain how to run redun server

Issue - State: closed - Opened by Melkaz about 2 years ago - 1 comment

#57 - fix pod deletion on job deletion

Pull Request - State: closed - Opened by dakoner about 2 years ago

#56 - Database connection error after completing very long task

Issue - State: open - Opened by spitz-dan-l about 2 years ago

#55 - DO NOT SUBMIT: K8s job specific secret- make a unique secret for each job

Pull Request - State: closed - Opened by dakoner about 2 years ago - 1 comment

#54 - Use user-defined namespace for AWS secrets.

Pull Request - State: closed - Opened by dakoner about 2 years ago - 1 comment

#53 - please document required setup for scheduling tasks from python code

Issue - State: open - Opened by hamr about 2 years ago - 2 comments

#52 - Fix a case where job completion wasn't being detected.

Pull Request - State: closed - Opened by dakoner about 2 years ago

#51 - Checks k8s server version, disable array job if server is too old

Pull Request - State: closed - Opened by dakoner about 2 years ago

#50 - Get k8s server version, default to no array jobs if server is too old.

Pull Request - State: closed - Opened by dakoner about 2 years ago

#48 - Code packaging for script tasks

Issue - State: open - Opened by spitz-dan-l about 2 years ago

#46 - Task-specific code packaging

Issue - State: open - Opened by spitz-dan-l about 2 years ago - 1 comment

#45 - Quality of life improvements for kubernetes executor

Pull Request - State: closed - Opened by ricomnl about 2 years ago - 3 comments

#44 - Add creation of namespace; ignore error if it already exists.

Pull Request - State: closed - Opened by dakoner over 2 years ago - 1 comment

#43 - K8s dakoner create namespace

Pull Request - State: closed - Opened by dakoner over 2 years ago

#42 - Memory limits for local executor

Issue - State: open - Opened by jshleap over 2 years ago - 3 comments

#40 - Revert 1 k8s improvements

Pull Request - State: closed - Opened by ricomnl over 2 years ago

#39 - Add Docker image as task option

Issue - State: closed - Opened by mstone-modulus over 2 years ago - 9 comments

#38 - Bump pyspark from 3.1.1 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#37 - working on fixing docs build

Pull Request - State: closed - Opened by mattrasmus over 2 years ago

#36 - Add missing data.tsv and fix cleanup default

Pull Request - State: closed - Opened by mattrasmus over 2 years ago - 1 comment

#35 - Docker executor: No such container

Issue - State: closed - Opened by ricomnl over 2 years ago - 3 comments

#34 - Google cloud

Issue - State: closed - Opened by jshleap over 2 years ago - 6 comments

#32 - Update README.md

Pull Request - State: closed - Opened by sammun-insitro over 2 years ago

#31 - redun does not execute any code for a simple example

Issue - State: closed - Opened by elanmart over 2 years ago - 4 comments

#30 - Running redun pipelines locally with Docker

Issue - State: closed - Opened by ricomnl over 2 years ago - 7 comments

#29 - Conda executor and initial example

Pull Request - State: closed - Opened by spitz-dan-l over 2 years ago - 1 comment

#28 - Simplify set_arg_defaults.

Pull Request - State: closed - Opened by lucaswiman over 2 years ago - 3 comments

#27 - Cleaning up Batch jobs on unexpected termination

Issue - State: open - Opened by spitz-dan-l over 2 years ago - 1 comment

#26 - Integrate genomics libraries in Spark support

Issue - State: open - Opened by heuermh over 2 years ago - 1 comment

#25 - SLURM/HPC executor

Issue - State: open - Opened by multimeric over 2 years ago - 3 comments

#23 - Hashing a Task to include its dependencies

Issue - State: open - Opened by elanmart over 2 years ago - 2 comments

#22 - Add k8s executor

Pull Request - State: closed - Opened by mattrasmus over 2 years ago - 5 comments

#21 - Tempdir in script

Pull Request - State: open - Opened by spitz-dan-l over 2 years ago

#20 - For script tasks, `tempdir=True` with remote executor produces an error

Issue - State: open - Opened by spitz-dan-l over 2 years ago - 2 comments

#19 - K8s executor implementation

Pull Request - State: closed - Opened by dakoner over 2 years ago - 3 comments

#18 - Setting up the environment prior to task execution

Issue - State: closed - Opened by spitz-dan-l over 2 years ago - 3 comments

#17 - Config option `db_aws_secret_name` only works if the secret is in `us-west-2`

Issue - State: closed - Opened by spitz-dan-l over 2 years ago - 2 comments

#16 - Code packaging files in parent directories

Issue - State: open - Opened by spitz-dan-l over 2 years ago - 2 comments

#15 - Custom commandline argument parsing

Issue - State: closed - Opened by spitz-dan-l over 2 years ago - 2 comments

#14 - SQLalchemy caching warning

Issue - State: closed - Opened by bbremer almost 3 years ago - 3 comments

#13 - No need to use editable mode for redun install in examples

Pull Request - State: closed - Opened by mattrasmus almost 3 years ago

#12 - Staging files

Issue - State: closed - Opened by lyin-vir almost 3 years ago - 2 comments

#11 - Fixes for several problems davidek saw

Pull Request - State: closed - Opened by davidekhub almost 3 years ago - 2 comments

#10 - Nesting tasks with different executors: confusing results

Issue - State: closed - Opened by dakoner almost 3 years ago - 3 comments

#9 - Can't stage out directory trees

Issue - State: closed - Opened by dakoner almost 3 years ago - 2 comments

#8 - Use pathlib.Path instead of strings for path

Issue - State: open - Opened by flying-sheep almost 3 years ago

#7 - Use subprocess.run/check_output/… in examples

Issue - State: closed - Opened by flying-sheep almost 3 years ago - 1 comment

#5 - Fix typos discovered by codespell

Pull Request - State: closed - Opened by cclauss almost 3 years ago

#4 - GitHub Action to run tox on every pull request

Pull Request - State: closed - Opened by cclauss almost 3 years ago

#3 - Import Executor for lines 36 and 38

Pull Request - State: closed - Opened by cclauss almost 3 years ago