Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / informatics-isi-edu/deriva-py issues and pull requests

#179 - datapath fix for missing delete method on table wrapper

Pull Request - State: open - Opened by robes 3 months ago

#178 - Association table support and other improvements

Pull Request - State: closed - Opened by karlcz 3 months ago

#177 - Add ermrest catalog creation kwargs

Pull Request - State: closed - Opened by karlcz 6 months ago

#176 - Drop support for Python2 and make Python 3.8 the min required version.

Pull Request - State: closed - Opened by mikedarcy 9 months ago - 2 comments

#175 - Catalog resolve rid

Pull Request - State: closed - Opened by karlcz 9 months ago

#174 - Datapath contextualize

Pull Request - State: closed - Opened by robes 12 months ago - 1 comment

#173 - Upload directory archive preprocessing

Pull Request - State: closed - Opened by mikedarcy about 1 year ago

#172 - Cloning fixes

Pull Request - State: closed - Opened by mikedarcy about 1 year ago

#171 - Model apply speedup

Pull Request - State: closed - Opened by karlcz over 1 year ago

#170 - deriva-acl-config: idempotent ACL updates

Issue - State: open - Opened by hongsudt over 1 year ago

#169 - Take advantage of schema patterns in sample ACL files

Pull Request - State: closed - Opened by ljpearlman over 1 year ago

#168 - get_credential checks for active session or group membership

Issue - State: open - Opened by hongsudt almost 2 years ago
Labels: enhancement

#167 - fkey.acls.clear() method doesn't set acls to default

Issue - State: open - Opened by hongsudt almost 2 years ago
Labels: bug

#165 - Configure catalog

Pull Request - State: closed - Opened by robes about 2 years ago - 2 comments

#163 - Extend data path to support on insert, ignore if rows already exist

Issue - State: closed - Opened by hongsudt about 2 years ago - 1 comment

#162 - Made clear function conditional on annotations, acls, and acl_binding…

Pull Request - State: closed - Opened by hongsudt about 2 years ago

#161 - Possible Build Catalog in LocalHost?

Issue - State: closed - Opened by cloudlakecho about 2 years ago - 11 comments

#160 - CLI defaults for `--catalog` arg of type `int` broken

Issue - State: open - Opened by robes over 2 years ago

#157 - datapath support for linking on fkey objects

Pull Request - State: closed - Opened by robes almost 3 years ago

#156 - refactor DerivaServer, ErmrestCatalog, and new ErmrestAlias

Pull Request - State: closed - Opened by karlcz almost 3 years ago

#155 - more diagnostics for #153 and #154

Pull Request - State: closed - Opened by robes about 3 years ago

#153 - deriva-upload[-cli] fails on 0 byte length files

Issue - State: closed - Opened by robes about 3 years ago - 3 comments

#152 - raise tailored AttributeError on datapath object property errors

Pull Request - State: closed - Opened by robes over 3 years ago - 2 comments

#151 - Improve AttributeError messages for DataPath API

Issue - State: closed - Opened by robes over 3 years ago - 1 comment

#150 - Auto pagination for iterating through a ResultSet

Issue - State: open - Opened by u8sand over 3 years ago

#149 - refactor DerivaServer and ErmrestCatalog and add alias management

Pull Request - State: closed - Opened by karlcz over 3 years ago - 1 comment

#148 - GEO module - do more validation

Issue - State: open - Opened by ljpearlman over 3 years ago
Labels: enhancement

#147 - GEO module - handle null values correctly

Issue - State: closed - Opened by ljpearlman over 3 years ago - 1 comment
Labels: bug

#146 - GEO module - check data types

Issue - State: closed - Opened by ljpearlman over 3 years ago - 1 comment
Labels: bug

#145 - table.apply() fails in some cases

Issue - State: open - Opened by ljpearlman over 3 years ago - 1 comment

#144 - fkey indigestion on Schema and Table drop operations

Pull Request - State: closed - Opened by robes over 3 years ago

#142 - Hatrac_Store.put_loc() raises "Current uploaded content MD5 does not match the expected one"

Issue - State: closed - Opened by svoinea over 3 years ago - 4 comments
Labels: bug

#141 - Feature Request: deriva-hatrac-cli exists

Issue - State: open - Opened by GHAStVHenry almost 4 years ago

#140 - acl-config bug fix

Pull Request - State: closed - Opened by robes almost 4 years ago

#139 - param for headers in datapath fetch method (issue #138)

Pull Request - State: closed - Opened by robes almost 4 years ago

#138 - take request headers in the datapath 'fetch' method

Issue - State: closed - Opened by robes almost 4 years ago - 1 comment

#137 - Fix typo in README

Pull Request - State: closed - Opened by ctb almost 4 years ago

#136 - Globus sdk update

Pull Request - State: closed - Opened by mikedarcy about 4 years ago

#135 - Authentication token expires even with --refresh

Issue - State: closed - Opened by PratikSinghavi about 4 years ago - 1 comment

#134 - Bug in table instance alias handling

Issue - State: closed - Opened by karlcz about 4 years ago - 2 comments
Labels: bug

#133 - add 'domain_filter' to 'foreign-key' schema

Pull Request - State: closed - Opened by RFSH about 4 years ago

#132 - Validate api and cli for annotations (closes #126)

Pull Request - State: closed - Opened by robes over 4 years ago

#131 - d-h-c: stop urlquoting the path argument (fixes #130)

Pull Request - State: closed - Opened by robes over 4 years ago

#130 - deriva-hatrac-cli won't download versioned files

Issue - State: closed - Opened by ljpearlman over 4 years ago - 9 comments

#129 - Maps arbitrary names to identifiers in datapath (fixes #36)

Pull Request - State: closed - Opened by robes over 4 years ago

#128 - Datapath refactor

Pull Request - State: closed - Opened by robes over 4 years ago

#127 - Pruneconfig

Pull Request - State: closed - Opened by karlcz over 4 years ago

#126 - Validation utilities for schema annotations

Issue - State: closed - Opened by robes over 4 years ago - 6 comments
Labels: enhancement

#125 - merge and compose datapath fragments

Issue - State: closed - Opened by robes over 4 years ago

#124 - deepcopy of datapaths

Issue - State: closed - Opened by robes over 4 years ago

#123 - support for merging and composing paths with other paths

Pull Request - State: closed - Opened by robes over 4 years ago

#122 - check for binning min/max values determined to be `None` (#121)

Pull Request - State: closed - Opened by robes over 4 years ago

#121 - Ensure binning min/max values are not None

Issue - State: closed - Opened by robes over 4 years ago

#120 - making changes

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#119 - #informatics-isi-edu/rbk-project/issues/667 filter

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#118 - adding null checks

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#117 - fixing allele characteristics

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#116 - fixing allele characteristics

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#115 - #informatics-isi-edu/rbk-project/issues/540 allele

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#114 - #informatics-isi-edu/rbk-project/issues/540 allele

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#113 - fixing bugs

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#112 - #informatics-isi-edu/rbk-project/issues/540 allele

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#111 - GEO Excel and BDBag modifications

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#110 - deriva-globus-auth-utils login --hosts <host> generates bad redirect_url

Issue - State: closed - Opened by ljpearlman over 4 years ago - 2 comments

#109 - #informatics-isi-edu/rbk-project/issues/652

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#108 - Paged catalog download and some streaming requests.get tweaks.

Pull Request - State: closed - Opened by mikedarcy over 4 years ago

#107 - #informatics-isi-edu/rbk-project/issues/652

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#106 - informatics-isi-edu/rbk-project#615 rm .bam .bai

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#105 - geo transform processor

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#104 - fixing script

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#103 - informatics-isi-edu/rbk-project#615 fix script

Pull Request - State: closed - Opened by animesh-bhadouria over 4 years ago

#102 - Importing the pride_transform_processor

Pull Request - State: open - Opened by emirdad almost 5 years ago

#101 - Testing the pride_transform_processor

Pull Request - State: open - Opened by emirdad almost 5 years ago

#100 - Importing pride_transform_processor

Pull Request - State: closed - Opened by emirdad almost 5 years ago

#99 - Creating the pride_transform_processor

Pull Request - State: open - Opened by emirdad almost 5 years ago

#98 - convert type to prejson form in alter column (#97)

Pull Request - State: closed - Opened by robes almost 5 years ago

#97 - Type not converted to json in Column.alter()

Issue - State: closed - Opened by robes almost 5 years ago

#96 - Add README in BAG export file

Issue - State: open - Opened by crisaless about 5 years ago

#95 - DataPath API Revisions

Pull Request - State: closed - Opened by robes about 5 years ago - 2 comments

#94 - Support binning in datapath

Issue - State: closed - Opened by karlcz about 5 years ago - 1 comment
Labels: enhancement

#93 - compound group_key not working in datapath

Issue - State: closed - Opened by robes about 5 years ago - 2 comments

#92 - updates to the transform processors

Pull Request - State: closed - Opened by robes about 5 years ago

#91 - Relax and fix group list creation

Pull Request - State: closed - Opened by robes over 5 years ago

#89 - Model alteration methods and refactor

Pull Request - State: closed - Opened by karlcz over 5 years ago - 1 comment

#88 - relaxes group validation (fixes #86)

Pull Request - State: closed - Opened by robes over 5 years ago

#86 - acl-config fails for unrecognized group name

Issue - State: closed - Opened by robes over 5 years ago

#85 - Constraint name wrong in altercols branch

Issue - State: closed - Opened by carlkesselman over 5 years ago - 1 comment
Labels: wontfix

#84 - Backup restore utils

Pull Request - State: closed - Opened by mikedarcy over 5 years ago - 2 comments

#83 - throw ValueError for bad input args to get_acl and set_acl (#82)

Pull Request - State: closed - Opened by robes over 5 years ago

#82 - HatracStore get_acl missing error case

Issue - State: closed - Opened by karlcz over 5 years ago