Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / incf-nidash/PyNIDM issues and pull requests
#407 - Setup update required packages
Issue -
State: open - Opened by seanhatton 30 days ago
#406 - Fmriprep
Pull Request -
State: closed - Opened by dbkeator about 1 month ago
#405 - fixed bug if no -json_map nor -csv_map was supplied, errored out wher…
Pull Request -
State: closed - Opened by dbkeator about 1 month ago
#404 - csv2nidm invalid key DD
Issue -
State: open - Opened by seanhatton about 2 months ago
- 1 comment
#403 - Corrected thickness and surfacearea switches
Pull Request -
State: open - Opened by seanhatton 4 months ago
#402 - Corrected thickness and surfacearea switches
Pull Request -
State: closed - Opened by seanhatton 4 months ago
#401 - Added thickness and surface area switches
Pull Request -
State: closed - Opened by seanhatton 4 months ago
#400 - Added thickness and surface area switches
Pull Request -
State: closed - Opened by seanhatton 4 months ago
- 2 comments
#399 - Fmriprep
Pull Request -
State: closed - Opened by dbkeator 4 months ago
#398 - Warnings.warn("Setting 'extension_initial_dot' will be removed in pybids 0.16."
Issue -
State: open - Opened by seanhatton 5 months ago
#397 - bidsmri2nidm - Conversion of Author lists
Issue -
State: open - Opened by ckindermann 6 months ago
- 2 comments
#396 - changed subject key finding to support NIDM JSON map
Pull Request -
State: closed - Opened by dbkeator 8 months ago
- 1 comment
#395 - [gh-actions](deps): Bump codecov/codecov-action from 3 to 4
Pull Request -
State: open - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: internal
#394 - fixed bug with BIDS sidecar files when supplied by user and updated tests
Pull Request -
State: closed - Opened by dbkeator 10 months ago
- 1 comment
Labels: patch
#393 - PR #392 introduced breakage into testing
Issue -
State: open - Opened by yarikoptic 10 months ago
#392 - fixed a bug where a BIDS compliant json file is read
Pull Request -
State: closed - Opened by dbkeator 10 months ago
- 1 comment
#391 - [gh-actions](deps): Bump actions/setup-python from 4 to 5
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: internal
#390 - Allow pyld 2.x series
Pull Request -
State: closed - Opened by yarikoptic 12 months ago
- 2 comments
#389 - Some new typos found
Pull Request -
State: closed - Opened by yarikoptic 12 months ago
- 1 comment
#388 - Move tests dependencies into setup extras to centralize dependencies
Pull Request -
State: closed - Opened by yarikoptic 12 months ago
- 2 comments
#387 - Make key_exists more "pythonic", but it is not used at all -- remove?
Pull Request -
State: closed - Opened by yarikoptic about 1 year ago
- 1 comment
#386 - Replace "type(x) is y" with "isinstance(x, y)"
Pull Request -
State: closed - Opened by yarikoptic about 1 year ago
- 3 comments
#385 - Addressed issues in map_variables_to_terms to support dictionary of isAbout. Fixed up test: test_map_vars_to_terms.py to test for the two supported JSON sidecar formats
Pull Request -
State: closed - Opened by dbkeator about 1 year ago
- 2 comments
#384 - Addressed issues in map_variables_to_terms to support dictionary of isAbout. Fixed up test: test_map_vars_to_terms.py to test for the two supported JSON sidecar formats
Pull Request -
State: closed - Opened by dbkeator about 1 year ago
- 1 comment
#383 - [gh-actions](deps): Bump actions/checkout from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 2 comments
Labels: major, internal
#382 - Fixed up Utils.py/map_variables_to_terms
Pull Request -
State: closed - Opened by dbkeator about 1 year ago
- 2 comments
#381 - Unknown option `show-origin’ with bidsmri2nidm using NIDM
Issue -
State: closed - Opened by Rahul-Brito about 1 year ago
- 2 comments
#380 - fixed a few bugs in isAbout and source_variable keys in json sidecar files
Pull Request -
State: closed - Opened by dbkeator about 1 year ago
- 2 comments
Labels: minor, release
#379 - Make codespell happy again: afile -> f, ignore typoed line in CHANGELOG
Pull Request -
State: closed - Opened by yarikoptic about 1 year ago
- 2 comments
#378 - updated nidm model to collections of entities
Pull Request -
State: closed - Opened by dbkeator about 1 year ago
- 2 comments
Labels: minor, release, released
#377 - bidsmri2nidm - "ERROR: initializing InterLex connection" without further info
Issue -
State: open - Opened by yarikoptic over 1 year ago
- 4 comments
#376 - Refactor printing the same text to both stdout and a file
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, release, internal, released
#375 - [gh-actions](deps): Bump codespell-project/actions-codespell from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: major, internal
#374 - Use versioningit
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#373 - Open all text files with UTF-8 encoding
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, internal, released
#372 - Do not try to upload nonexisting junit artifacts
Pull Request -
State: closed - Opened by yarikoptic over 1 year ago
- 2 comments
Labels: released
#371 - Stop using `eval()`
Issue -
State: open - Opened by jwodder over 1 year ago
Labels: cleanup, internal
#370 - Use `.readthedocs.yaml` file to install pynidm in RTD environment
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, documentation, released
#369 - Assorted minor code improvements
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#368 - add allcontributors integration to add them all to README.md
Issue -
State: open - Opened by yarikoptic over 1 year ago
- 1 comment
Labels: documentation
#367 - Remove redundant imports
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#366 - Use Python 3-style `super()` calls
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#365 - Don't list `object` as a base class
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#364 - Improve string formatting syntax
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, internal, released
#363 - Pare down giant comment blocks that largely do what Git already does
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 4 comments
Labels: cleanup, internal, released
#362 - Delete `profiler.py`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#361 - Eliminate the use of global variables throughout the code
Issue -
State: open - Opened by jwodder over 1 year ago
Labels: cleanup, internal
#360 - Remove practically-unused `joblib`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, dependencies, released
#359 - Replace uses of `urllib.request` with `requests`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 4 comments
Labels: cleanup, internal, released
#358 - README and `docs/source/index.rst` do not agree on REST API
Issue -
State: open - Opened by jwodder over 1 year ago
- 4 comments
Labels: documentation
#357 - Enable building docs locally via `tox -e docs`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#356 - Swagger definition is (apparently) out of date
Issue -
State: open - Opened by jwodder over 1 year ago
Labels: documentation
#355 - Some CLI options do not follow common naming conventions
Issue -
State: open - Opened by jwodder over 1 year ago
Labels: cli
#354 - Add `.coverage` to `.gitignore`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#353 - Fix `__version__` import
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#352 - Clean up Click testing
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, tests, released
#351 - Clean up Docker-related files
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, internal, released
#350 - Update workflow actions versions and keep them up to date with Dependabot
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#349 - Add duecredit citation/support
Issue -
State: open - Opened by yarikoptic over 1 year ago
#348 - Remove fallback to Python 2 import
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#347 - Clean up install requirements
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, dependencies, released
#346 - Set up auto
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, internal, released
#345 - Shorten overly-long lines of punctuation
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#344 - Measure test coverage
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, tests, released
#343 - Write test temp files to temp directories
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, tests, released
#342 - Create CONTRIBUTING.md or DEVELOPMENT.md file
Issue -
State: open - Opened by yarikoptic over 1 year ago
Labels: documentation
#341 - Make pytest error on warnings
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, tests, released
#340 - Clean up `README.rst` markup
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, documentation, released
#339 - Replace `tmpdir` fixture with `tmp_path`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, tests, released
#338 - Prune `README.md` files from code directories
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#337 - Replace simplejson with stdlib json
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, dependencies, released
#336 - Remove uses of `six`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#335 - Remove Python 2-specific `__future__` imports
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#334 - Add testing via tox
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 4 comments
Labels: cleanup, internal, released
#333 - Run linting as part of CI
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#332 - Use a `src/` layout
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 5 comments
Labels: cleanup, internal, released
#331 - Run tests in CI on pushes & merges to master
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#330 - Use `build` in `pythonpublish.yml`
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 1 comment
Labels: cleanup, internal, released
#329 - Add & apply pre-commit and linting
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 5 comments
Labels: cleanup, internal, released
#328 - "Splitted" is not a word
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#327 - `docs/build/` should not be committed
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 3 comments
Labels: cleanup, internal, released
#326 - Update Python packaging
Pull Request -
State: closed - Opened by jwodder over 1 year ago
- 2 comments
Labels: cleanup, internal, released
#325 - Face lift
Issue -
State: open - Opened by yarikoptic over 1 year ago
- 15 comments
Labels: easy, cleanup
#324 - Add 3.10 and 3.11 into testing
Pull Request -
State: closed - Opened by yarikoptic over 1 year ago
- 1 comment
Labels: released
#323 - Write test.ttl into temp dir(s)
Issue -
State: closed - Opened by yarikoptic over 1 year ago
- 1 comment
Labels: easy, released
#322 - Fix gitignore to ignore all egg-infos, not only incorrectly named, remove one from git
Pull Request -
State: closed - Opened by yarikoptic over 1 year ago
- 1 comment
#321 - codespell: action, config + fixes
Pull Request -
State: closed - Opened by yarikoptic over 1 year ago
- 3 comments
Labels: released
#320 - "Interesting" output for annexed files
Issue -
State: open - Opened by Remi-Gau almost 2 years ago
- 3 comments
#319 - deleting BIDS like participants.json without warning
Issue -
State: open - Opened by Remi-Gau almost 2 years ago
- 2 comments
#318 - Using rich for a more friendly terminal experience
Issue -
State: open - Opened by Remi-Gau almost 2 years ago
- 1 comment
#317 - Changes to README and nidm_linreg
Pull Request -
State: closed - Opened by AKUMAR0019 about 2 years ago
#316 - Changes to README and nidm_linreg
Pull Request -
State: closed - Opened by AKUMAR0019 about 2 years ago
- 1 comment
#315 - bumping version
Pull Request -
State: closed - Opened by dbkeator about 2 years ago
#314 - bug update to accomodate new NIDM property sourceVariable changed from source_variable
Pull Request -
State: closed - Opened by dbkeator about 2 years ago
#313 - Provide a summary of a NIDM file
Issue -
State: open - Opened by dnkennedy over 2 years ago
#312 - csv2nidm -json_map
Issue -
State: open - Opened by maegancalvert over 2 years ago
- 11 comments
#311 - fixed bug in bidsmri2nidm.py where phenotype files with identical var…
Pull Request -
State: closed - Opened by dbkeator over 2 years ago
#310 - dealing with BIDS phenotype directories
Issue -
State: open - Opened by dnkennedy over 2 years ago
#309 - Do not install packages via pip on behalf of the user without asking for permission
Issue -
State: closed - Opened by yarikoptic almost 3 years ago
- 1 comment
#308 - no good reason to commit .egg-info AFAIK (also git ignore evens/ I have)
Pull Request -
State: closed - Opened by yarikoptic almost 3 years ago
- 1 comment