Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / incf-nidash/PyNIDM issues and pull requests

#397 - bidsmri2nidm - Conversion of Author lists

Issue - State: open - Opened by ckindermann 2 months ago - 2 comments

#396 - changed subject key finding to support NIDM JSON map

Pull Request - State: closed - Opened by dbkeator 5 months ago - 1 comment

#395 - [gh-actions](deps): Bump codecov/codecov-action from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: internal

#394 - fixed bug with BIDS sidecar files when supplied by user and updated tests

Pull Request - State: closed - Opened by dbkeator 7 months ago - 1 comment
Labels: patch

#393 - PR #392 introduced breakage into testing

Issue - State: open - Opened by yarikoptic 7 months ago

#392 - fixed a bug where a BIDS compliant json file is read

Pull Request - State: closed - Opened by dbkeator 7 months ago - 1 comment

#391 - [gh-actions](deps): Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: internal

#390 - Allow pyld 2.x series

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 2 comments

#389 - Some new typos found

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 1 comment

#388 - Move tests dependencies into setup extras to centralize dependencies

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 2 comments

#387 - Make key_exists more "pythonic", but it is not used at all -- remove?

Pull Request - State: closed - Opened by yarikoptic 10 months ago - 1 comment

#386 - Replace "type(x) is y" with "isinstance(x, y)"

Pull Request - State: closed - Opened by yarikoptic 10 months ago - 3 comments

#383 - [gh-actions](deps): Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: major, internal

#382 - Fixed up Utils.py/map_variables_to_terms

Pull Request - State: closed - Opened by dbkeator 10 months ago - 2 comments

#381 - Unknown option `show-origin’ with bidsmri2nidm using NIDM

Issue - State: closed - Opened by Rahul-Brito 11 months ago - 2 comments

#380 - fixed a few bugs in isAbout and source_variable keys in json sidecar files

Pull Request - State: closed - Opened by dbkeator 12 months ago - 2 comments
Labels: minor, release

#379 - Make codespell happy again: afile -> f, ignore typoed line in CHANGELOG

Pull Request - State: closed - Opened by yarikoptic 12 months ago - 2 comments

#378 - updated nidm model to collections of entities

Pull Request - State: closed - Opened by dbkeator 12 months ago - 2 comments
Labels: minor, release, released

#377 - bidsmri2nidm - "ERROR: initializing InterLex connection" without further info

Issue - State: open - Opened by yarikoptic almost 1 year ago - 4 comments

#376 - Refactor printing the same text to both stdout and a file

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, release, internal, released

#375 - [gh-actions](deps): Bump codespell-project/actions-codespell from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: major, internal

#374 - Use versioningit

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#373 - Open all text files with UTF-8 encoding

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, internal, released

#372 - Do not try to upload nonexisting junit artifacts

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 2 comments
Labels: released

#371 - Stop using `eval()`

Issue - State: open - Opened by jwodder about 1 year ago
Labels: cleanup, internal

#370 - Use `.readthedocs.yaml` file to install pynidm in RTD environment

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, documentation, released

#369 - Assorted minor code improvements

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#368 - add allcontributors integration to add them all to README.md

Issue - State: open - Opened by yarikoptic about 1 year ago - 1 comment
Labels: documentation

#367 - Remove redundant imports

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#366 - Use Python 3-style `super()` calls

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#365 - Don't list `object` as a base class

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#364 - Improve string formatting syntax

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, internal, released

#363 - Pare down giant comment blocks that largely do what Git already does

Pull Request - State: closed - Opened by jwodder about 1 year ago - 4 comments
Labels: cleanup, internal, released

#362 - Delete `profiler.py`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#361 - Eliminate the use of global variables throughout the code

Issue - State: open - Opened by jwodder about 1 year ago
Labels: cleanup, internal

#360 - Remove practically-unused `joblib`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, dependencies, released

#359 - Replace uses of `urllib.request` with `requests`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 4 comments
Labels: cleanup, internal, released

#358 - README and `docs/source/index.rst` do not agree on REST API

Issue - State: open - Opened by jwodder about 1 year ago - 4 comments
Labels: documentation

#357 - Enable building docs locally via `tox -e docs`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#356 - Swagger definition is (apparently) out of date

Issue - State: open - Opened by jwodder about 1 year ago
Labels: documentation

#355 - Some CLI options do not follow common naming conventions

Issue - State: open - Opened by jwodder about 1 year ago
Labels: cli

#354 - Add `.coverage` to `.gitignore`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#353 - Fix `__version__` import

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#352 - Clean up Click testing

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, tests, released

#351 - Clean up Docker-related files

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, internal, released

#350 - Update workflow actions versions and keep them up to date with Dependabot

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#349 - Add duecredit citation/support

Issue - State: open - Opened by yarikoptic about 1 year ago

#348 - Remove fallback to Python 2 import

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#347 - Clean up install requirements

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, dependencies, released

#346 - Set up auto

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, internal, released

#345 - Shorten overly-long lines of punctuation

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#344 - Measure test coverage

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, tests, released

#343 - Write test temp files to temp directories

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, tests, released

#342 - Create CONTRIBUTING.md or DEVELOPMENT.md file

Issue - State: open - Opened by yarikoptic about 1 year ago
Labels: documentation

#341 - Make pytest error on warnings

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, tests, released

#340 - Clean up `README.rst` markup

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, documentation, released

#339 - Replace `tmpdir` fixture with `tmp_path`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, tests, released

#338 - Prune `README.md` files from code directories

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#337 - Replace simplejson with stdlib json

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, dependencies, released

#336 - Remove uses of `six`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#335 - Remove Python 2-specific `__future__` imports

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#334 - Add testing via tox

Pull Request - State: closed - Opened by jwodder about 1 year ago - 4 comments
Labels: cleanup, internal, released

#333 - Run linting as part of CI

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#332 - Use a `src/` layout

Pull Request - State: closed - Opened by jwodder about 1 year ago - 5 comments
Labels: cleanup, internal, released

#331 - Run tests in CI on pushes & merges to master

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#330 - Use `build` in `pythonpublish.yml`

Pull Request - State: closed - Opened by jwodder about 1 year ago - 1 comment
Labels: cleanup, internal, released

#329 - Add & apply pre-commit and linting

Pull Request - State: closed - Opened by jwodder about 1 year ago - 5 comments
Labels: cleanup, internal, released

#328 - "Splitted" is not a word

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#327 - `docs/build/` should not be committed

Pull Request - State: closed - Opened by jwodder about 1 year ago - 3 comments
Labels: cleanup, internal, released

#326 - Update Python packaging

Pull Request - State: closed - Opened by jwodder about 1 year ago - 2 comments
Labels: cleanup, internal, released

#325 - Face lift

Issue - State: open - Opened by yarikoptic about 1 year ago - 15 comments
Labels: easy, cleanup

#324 - Add 3.10 and 3.11 into testing

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 1 comment
Labels: released

#323 - Write test.ttl into temp dir(s)

Issue - State: closed - Opened by yarikoptic about 1 year ago - 1 comment
Labels: easy, released

#322 - Fix gitignore to ignore all egg-infos, not only incorrectly named, remove one from git

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 1 comment

#321 - codespell: action, config + fixes

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 3 comments
Labels: released

#320 - "Interesting" output for annexed files

Issue - State: open - Opened by Remi-Gau over 1 year ago - 3 comments

#319 - deleting BIDS like participants.json without warning

Issue - State: open - Opened by Remi-Gau over 1 year ago - 2 comments

#318 - Using rich for a more friendly terminal experience

Issue - State: open - Opened by Remi-Gau over 1 year ago - 1 comment

#317 - Changes to README and nidm_linreg

Pull Request - State: closed - Opened by AKUMAR0019 almost 2 years ago

#316 - Changes to README and nidm_linreg

Pull Request - State: closed - Opened by AKUMAR0019 almost 2 years ago - 1 comment

#315 - bumping version

Pull Request - State: closed - Opened by dbkeator almost 2 years ago

#313 - Provide a summary of a NIDM file

Issue - State: open - Opened by dnkennedy about 2 years ago

#312 - csv2nidm -json_map

Issue - State: open - Opened by maegancalvert about 2 years ago - 11 comments

#310 - dealing with BIDS phenotype directories

Issue - State: open - Opened by dnkennedy over 2 years ago

#308 - no good reason to commit .egg-info AFAIK (also git ignore evens/ I have)

Pull Request - State: closed - Opened by yarikoptic over 2 years ago - 1 comment

#305 - increasing micro version

Pull Request - State: closed - Opened by dbkeator over 2 years ago

#304 - fixed bug in read_nidm where the b-value and b-vector entities...

Pull Request - State: closed - Opened by dbkeator over 2 years ago

#303 - Use RST links in readme

Pull Request - State: closed - Opened by surchs over 2 years ago - 1 comment
Labels: released

#302 - changed PyPi to Installation in the ReadTheDocs documentation

Pull Request - State: closed - Opened by dbkeator over 2 years ago

#301 - updated Installation section of README

Pull Request - State: closed - Opened by dbkeator over 2 years ago

#300 - added additional readme details about linear regression tool

Pull Request - State: closed - Opened by dbkeator over 2 years ago

#299 - updated nidm_linreg.py tool so output file is written correctly.

Pull Request - State: closed - Opened by dbkeator over 2 years ago