Ecosyste.ms: Issues

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GitHub / inab/trimal issues and pull requests

#100 - Update traffic data

Pull Request - State: open - Opened by nicodr97 5 months ago

#100 - Update traffic data

Pull Request - State: open - Opened by nicodr97 5 months ago

#99 - v1.5.0 release

Pull Request - State: closed - Opened by nicodr97 6 months ago

#99 - v1.5.0 release

Pull Request - State: closed - Opened by nicodr97 6 months ago

#98 - How to only trim terminal of the alignment with a threshold value of gap

Issue - State: closed - Opened by permia 8 months ago - 1 comment

#98 - How to only trim terminal of the alignment with a threshold value of gap

Issue - State: closed - Opened by permia 8 months ago - 1 comment

#97 - Refactor the parsers for better compatibility and memory usage

Pull Request - State: closed - Opened by althonos 9 months ago - 1 comment

#97 - Refactor the parsers for better compatibility and memory usage

Pull Request - State: closed - Opened by althonos 9 months ago - 1 comment

#96 - Implement runtime dispatch of SIMD code

Pull Request - State: closed - Opened by althonos 10 months ago - 1 comment

#96 - Implement runtime dispatch of SIMD code

Pull Request - State: closed - Opened by althonos 10 months ago - 1 comment

#95 - Update traffic data

Pull Request - State: closed - Opened by nicodr97 10 months ago

#95 - Update traffic data

Pull Request - State: closed - Opened by nicodr97 10 months ago

#94 - Update traffic data

Pull Request - State: closed - Opened by nicodr97 11 months ago

#94 - Update traffic data

Pull Request - State: closed - Opened by nicodr97 11 months ago

#93 - errors of "Segmentation fault (core dumped)"

Issue - State: closed - Opened by zhengyanstu 12 months ago - 2 comments

#93 - errors of "Segmentation fault (core dumped)"

Issue - State: closed - Opened by zhengyanstu 12 months ago - 2 comments

#92 - Update traffic data (30-11-2023)

Pull Request - State: closed - Opened by nicodr97 12 months ago

#92 - Update traffic data (30-11-2023)

Pull Request - State: closed - Opened by nicodr97 12 months ago

#91 - Update traffic data ()

Pull Request - State: closed - Opened by nicodr97 12 months ago

#91 - Update traffic data ()

Pull Request - State: closed - Opened by nicodr97 12 months ago

#90 - Schedule traffic workflow

Pull Request - State: closed - Opened by nicodr97 12 months ago

#90 - Schedule traffic workflow

Pull Request - State: closed - Opened by nicodr97 12 months ago

#89 - Update traffic data (23-11-2023)

Pull Request - State: closed - Opened by nicodr97 12 months ago

#89 - Update traffic data (23-11-2023)

Pull Request - State: closed - Opened by nicodr97 12 months ago

#88 - Update traffic data (23-11-2023)

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#88 - Update traffic data (23-11-2023)

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#87 - Updated traffic views (2023-11-17)

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#87 - Updated traffic views (2023-11-17)

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#86 - Updated traffic views ()

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#86 - Updated traffic views ()

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#85 - Updated traffic views $(date +'%d-%m-%Y')

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#85 - Updated traffic views $(date +'%d-%m-%Y')

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#84 - Updated traffic views $(date +'%d-%m-%Y')

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#84 - Updated traffic views $(date +'%d-%m-%Y')

Pull Request - State: closed - Opened by github-actions[bot] almost 1 year ago

#83 - Error: the symbol 'Z' accesing the matrix is not defined in this object

Issue - State: closed - Opened by Dylan-Padilla about 1 year ago - 2 comments

#83 - Error: the symbol 'Z' accesing the matrix is not defined in this object

Issue - State: closed - Opened by Dylan-Padilla about 1 year ago - 2 comments

#82 - Cutting header name to 10 letters/symbols

Issue - State: closed - Opened by samandmac about 1 year ago - 2 comments

#82 - Cutting header name to 10 letters/symbols

Issue - State: closed - Opened by samandmac about 1 year ago - 2 comments

#81 - Removing short sequences

Issue - State: closed - Opened by theo-allnutt-bioinformatics over 1 year ago - 2 comments

#81 - Removing short sequences

Issue - State: closed - Opened by theo-allnutt-bioinformatics over 1 year ago - 2 comments

#80 - Add trimmed MSAs and test them as part of the CI (version 2)

Pull Request - State: closed - Opened by nicodr97 over 1 year ago

#80 - Add trimmed MSAs and test them as part of the CI (version 2)

Pull Request - State: closed - Opened by nicodr97 over 1 year ago

#79 - Change identity matrix to array and reuse it to save memory

Pull Request - State: closed - Opened by nicodr97 over 1 year ago

#79 - Change identity matrix to array and reuse it to save memory

Pull Request - State: closed - Opened by nicodr97 over 1 year ago

#78 - Add trimmed MSAs and test them as part of the CI

Pull Request - State: closed - Opened by nicodr97 over 1 year ago

#78 - Add trimmed MSAs and test them as part of the CI

Pull Request - State: closed - Opened by nicodr97 over 1 year ago

#77 - Specifying an alternative similarity matrix

Issue - State: closed - Opened by JonathonMifsud over 1 year ago - 2 comments

#77 - Specifying an alternative similarity matrix

Issue - State: closed - Opened by JonathonMifsud over 1 year ago - 2 comments

#76 - WARNING 010

Issue - State: closed - Opened by WRran-Hydrogen over 1 year ago - 4 comments

#76 - WARNING 010

Issue - State: closed - Opened by WRran-Hydrogen over 1 year ago - 4 comments

#75 - Add SIMD implementation of the different statistics

Pull Request - State: closed - Opened by althonos over 1 year ago - 5 comments

#75 - Add SIMD implementation of the different statistics

Pull Request - State: closed - Opened by althonos over 1 year ago - 5 comments

#74 - Error message on alignment when using TrimAl

Issue - State: closed - Opened by sakuragi0109 over 1 year ago - 1 comment

#74 - Error message on alignment when using TrimAl

Issue - State: closed - Opened by sakuragi0109 over 1 year ago - 1 comment

#73 - Improve performance of sequence length computation

Pull Request - State: closed - Opened by althonos over 1 year ago

#73 - Improve performance of sequence length computation

Pull Request - State: closed - Opened by althonos over 1 year ago

#72 - Move identity and overlap computation into dedicated `statistics` classes

Pull Request - State: closed - Opened by althonos over 1 year ago - 1 comment

#72 - Move identity and overlap computation into dedicated `statistics` classes

Pull Request - State: closed - Opened by althonos over 1 year ago - 1 comment

#71 - WARNING: Removing column '743' composed only by gaps

Issue - State: closed - Opened by MaxBai0123 over 1 year ago - 1 comment

#71 - WARNING: Removing column '743' composed only by gaps

Issue - State: closed - Opened by MaxBai0123 over 1 year ago - 1 comment

#70 - Error: the symbol '*' is incorrect

Issue - State: closed - Opened by Wuhl00 over 1 year ago - 4 comments

#70 - Error: the symbol '*' is incorrect

Issue - State: closed - Opened by Wuhl00 over 1 year ago - 4 comments

#69 - Implement SIMD code for faster statistics computation

Pull Request - State: closed - Opened by althonos about 2 years ago

#69 - Implement SIMD code for faster statistics computation

Pull Request - State: closed - Opened by althonos about 2 years ago

#68 - Use GitHub Actions as CI for Linux x86_64 and aarch64

Pull Request - State: closed - Opened by markjens over 2 years ago - 7 comments

#68 - Use GitHub Actions as CI for Linux x86_64 and aarch64

Pull Request - State: closed - Opened by markjens over 2 years ago - 7 comments

#67 - [Question] Is Linux/Mac ARM64 officially supported ?

Issue - State: closed - Opened by markjens over 2 years ago - 1 comment

#67 - [Question] Is Linux/Mac ARM64 officially supported ?

Issue - State: closed - Opened by markjens over 2 years ago - 1 comment

#66 - Improve performance of `Similarity::calculateVectors`

Pull Request - State: closed - Opened by althonos over 2 years ago - 1 comment

#66 - Improve performance of `Similarity::calculateVectors`

Pull Request - State: closed - Opened by althonos over 2 years ago - 1 comment

#65 - Better understand corner case for gappyout

Issue - State: open - Opened by scapella over 2 years ago

#65 - Better understand corner case for gappyout

Issue - State: open - Opened by scapella over 2 years ago

#64 - managing/ignoring warnings

Issue - State: open - Opened by scapella over 2 years ago

#64 - managing/ignoring warnings

Issue - State: open - Opened by scapella over 2 years ago

#62 - "Permission denied" when installing (MacOS M1 chip)

Issue - State: closed - Opened by HeidiOttesen about 3 years ago - 1 comment

#62 - "Permission denied" when installing (MacOS M1 chip)

Issue - State: closed - Opened by HeidiOttesen about 3 years ago - 1 comment

#61 - remove columns with gaps in first line?

Issue - State: closed - Opened by dstern about 3 years ago - 1 comment

#61 - remove columns with gaps in first line?

Issue - State: closed - Opened by dstern about 3 years ago - 1 comment

#60 - trimal: command not found

Issue - State: closed - Opened by MohammadJamilShuvo over 3 years ago

#60 - trimal: command not found

Issue - State: closed - Opened by MohammadJamilShuvo over 3 years ago

#59 - Fix print correct input type in readAl

Pull Request - State: open - Opened by danieledler almost 4 years ago - 1 comment

#59 - Fix print correct input type in readAl

Pull Request - State: open - Opened by danieledler almost 4 years ago - 1 comment

#58 - Removing gappy sequences

Issue - State: closed - Opened by BenKuhnhaeuser about 4 years ago - 1 comment

#58 - Removing gappy sequences

Issue - State: closed - Opened by BenKuhnhaeuser about 4 years ago - 1 comment

#57 - Option to remove all ambiguous columns

Issue - State: open - Opened by vatanparast over 4 years ago

#57 - Option to remove all ambiguous columns

Issue - State: open - Opened by vatanparast over 4 years ago

#56 - trimal -selectcols doesn't work

Issue - State: closed - Opened by darap888 over 4 years ago - 6 comments

#56 - trimal -selectcols doesn't work

Issue - State: closed - Opened by darap888 over 4 years ago - 6 comments

#55 - Does trimal have a codon alignment option ?

Issue - State: open - Opened by BenjaminGuinet almost 5 years ago

#55 - Does trimal have a codon alignment option ?

Issue - State: open - Opened by BenjaminGuinet almost 5 years ago

#54 - 'compareset' error when using trimAL 1.2 on Windows

Issue - State: closed - Opened by dongzhang0725 over 5 years ago - 5 comments

#54 - 'compareset' error when using trimAL 1.2 on Windows

Issue - State: closed - Opened by dongzhang0725 over 5 years ago - 5 comments

#53 - trimAl doesn't recognise alignment

Issue - State: open - Opened by honeyella over 5 years ago - 5 comments

#53 - trimAl doesn't recognise alignment

Issue - State: open - Opened by honeyella over 5 years ago - 5 comments

#52 - GH Pages

Pull Request - State: closed - Opened by Vicfero over 5 years ago

#52 - GH Pages

Pull Request - State: closed - Opened by Vicfero over 5 years ago

#51 - Updated hard-coded values and documentation source

Pull Request - State: closed - Opened by Vicfero over 5 years ago - 1 comment

#51 - Updated hard-coded values and documentation source

Pull Request - State: closed - Opened by Vicfero over 5 years ago - 1 comment