imr-framework/pypulseq issues and pull requests

#202 - Fix direct install from GitHub repo

Pull Request - State: closed - Opened by schuenke 26 days ago - 5 comments

#201 - Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago - 1 comment
Labels: dependencies, github_actions

#200 - Reworked `check_timing` to provide a structured error report

Pull Request - State: open - Opened by FrankZijlstra 27 days ago - 5 comments
Labels: enhancement

#199 - Introduction of custom variables

Issue - State: open - Opened by schuenke about 1 month ago - 4 comments
Labels: enhancement

#198 - Add 'first' and 'last' arg to make_arbitrary_grad

Pull Request - State: closed - Opened by schuenke about 1 month ago

#197 - Define common code style (Linting/Formatting)

Issue - State: open - Opened by schuenke about 1 month ago
Labels: enhancement

#196 - Add calc_adc_segments for segmentation of long ADC.

Pull Request - State: closed - Opened by felixlandmeyer about 1 month ago - 2 comments

#195 - Replace setup.py by pyproject.toml

Pull Request - State: closed - Opened by btasdelen about 1 month ago - 7 comments

#193 - Adjust eps value (floating point precision)

Pull Request - State: closed - Opened by schuenke about 1 month ago

#192 - calculate_kspace_PP error with EPI sequence

Issue - State: closed - Opened by magdamd about 1 month ago - 2 comments

#191 - Sub-microsecond ADC delays are dropped without notification when exporting to .seq file

Issue - State: open - Opened by jweine about 1 month ago - 3 comments

#190 - `Sequence.install` functionality

Pull Request - State: open - Opened by FrankZijlstra about 2 months ago - 1 comment

#189 - Add area attribute for arbitrary gradients

Pull Request - State: closed - Opened by schuenke about 2 months ago

#188 - RF: Move sigpy to an extra optional dependency

Pull Request - State: closed - Opened by wtclarke about 2 months ago - 4 comments

#187 - Fix incorrect and non-zero delay.

Pull Request - State: closed - Opened by btasdelen about 2 months ago

#186 - Rounding error in add_gradients leads to incorrect gradient waveforms

Issue - State: closed - Opened by felixlandmeyer about 2 months ago - 3 comments

#185 - block duration rounding assertion test

Issue - State: open - Opened by L2roche 3 months ago - 1 comment

#183 - Incompatibility of sigpy dependency with scipy 1.14.0 and numpy 2.0

Issue - State: open - Opened by schuenke 3 months ago - 1 comment

#181 - Changed `get_gradients` to actually use extrapolation in the piecewise polynomial

Pull Request - State: closed - Opened by FrankZijlstra 3 months ago

#180 - feat: add TRID label (GE interpreter).

Pull Request - State: closed - Opened by mcencini 3 months ago - 2 comments

#179 - `remove_duplicates()` without `in_place = True` causes `signature_value` to be not updated after `write`.

Pull Request - State: closed - Opened by btasdelen 4 months ago - 5 comments

#178 - Added functionality to remove duplicate events

Pull Request - State: closed - Opened by FrankZijlstra 4 months ago

#177 - Release 1.4.2

Pull Request - State: closed - Opened by schuenke 4 months ago - 8 comments

#176 - Change default branch back to main

Issue - State: open - Opened by schuenke 4 months ago - 1 comment

#174 - Numpy float error when importing pypulseq

Issue - State: closed - Opened by mkulam 5 months ago - 1 comment

#173 - Add continous deployment (CD) workflow

Pull Request - State: closed - Opened by schuenke 6 months ago - 3 comments
Labels: enhancement

#172 - Update init.py to solve deprecation error

Pull Request - State: closed - Opened by SherineBrahma 6 months ago - 2 comments

#171 - Fix make_extended_trapezoid area

Pull Request - State: closed - Opened by schuenke 6 months ago - 22 comments

#170 - Added gradient spectrum calculations

Pull Request - State: closed - Opened by FrankZijlstra 7 months ago - 1 comment
Labels: enhancement

#169 - "Identical" shapes not found in event_lib

Issue - State: closed - Opened by schuenke 8 months ago - 4 comments

#167 - Bug fixes in `make_extended_trapezoid` and `add_gradients`

Pull Request - State: closed - Opened by FrankZijlstra 8 months ago - 1 comment

#166 - Sigpy pulses can not be added to sequence

Issue - State: open - Opened by mavel101 8 months ago - 1 comment

#165 - A few small bugfixes

Pull Request - State: closed - Opened by FrankZijlstra 9 months ago - 2 comments

#164 - Feature: `evaluate_labels` function in `Sequence`

Pull Request - State: closed - Opened by FrankZijlstra 9 months ago

#163 - Feature: Sequence `install`

Issue - State: open - Opened by FrankZijlstra 9 months ago

#162 - Fixed `read_seq` for reading v1.3.1 sequence files

Pull Request - State: closed - Opened by FrankZijlstra 9 months ago - 1 comment

#161 - Compatibility with Pulseq 1.3.1 broken

Issue - State: closed - Opened by schuenke 9 months ago - 1 comment

#159 - Various bug fixes, features, and cleanups

Pull Request - State: closed - Opened by FrankZijlstra 10 months ago - 7 comments

#158 - Update confusing documentation for calc_duration.py

Pull Request - State: closed - Opened by gabuzi 10 months ago - 3 comments

#157 - Fix BlockDurationRaster being ignored in read_seq.py

Pull Request - State: closed - Opened by gabuzi 10 months ago

#156 - Pypulseq ignores BlockDurationRaster Definition in file

Issue - State: closed - Opened by gabuzi 10 months ago

#155 - KeyError When Reading .seq File generated from MATLAB pulseq 1.4.0 in pypulseq 1.4.0

Issue - State: closed - Opened by snawarhussain 10 months ago - 5 comments

#153 - PyPulseq requires GPU compute (cuPy) on Google Colab

Issue - State: closed - Opened by btasdelen 11 months ago - 3 comments

#152 - Conda Package for Pypulseq

Issue - State: open - Opened by gabuzi 11 months ago - 5 comments

#151 - BF: Refine argument options for make_block_pulse

Pull Request - State: closed - Opened by wtclarke 11 months ago

#150 - make_trapezoid with just flat_area fails

Issue - State: closed - Opened by gabuzi 11 months ago - 6 comments

#149 - Arguments of make_block_pulse are highly confusing

Issue - State: closed - Opened by wtclarke 11 months ago - 3 comments

#148 - Bump sigpy version to 0.1.26

Pull Request - State: closed - Opened by Andrew-Dupuis 11 months ago - 1 comment

#147 - BF: Minor bug fixes in sequence.py and make_gauss_pulse.py

Pull Request - State: closed - Opened by wtclarke 11 months ago

#146 - BF: make_trapezoid with amplitude + duration as inputs.

Pull Request - State: closed - Opened by wtclarke 11 months ago - 3 comments

#145 - Cannot generate trapezoidal gradient only specifying amplitude and duration.

Issue - State: closed - Opened by wtclarke 11 months ago - 1 comment

#144 - CI Tests

Issue - State: open - Opened by wtclarke 11 months ago - 1 comment

#143 - Enh: New options in make_arbitrary_rf.py for adiabatic pulses

Pull Request - State: closed - Opened by wtclarke 11 months ago

#142 - Enh: Enable GitHub CI

Pull Request - State: closed - Opened by wtclarke 11 months ago

#141 - Fixed `set_block` to give errors when multiple events of the same type are specified

Pull Request - State: closed - Opened by FrankZijlstra 11 months ago - 3 comments

#140 - Reworked piecewise polynomial implementation in Sequence to use scipy's PPoly

Pull Request - State: closed - Opened by FrankZijlstra 11 months ago - 1 comment

#139 - AttributeError when calling calculate_kspace() in sequence.py

Issue - State: closed - Opened by HSun981 12 months ago - 2 comments

#138 - np.int and np.float

Issue - State: closed - Opened by sairamgeethanath 12 months ago - 1 comment
Labels: bug

#137 - Add init,py to utils to help setuptools discover the package

Pull Request - State: closed - Opened by fzimmermann89 12 months ago

#136 - unused variable

Issue - State: open - Opened by maddin200 about 1 year ago - 3 comments

#135 - change sigpy dependency to GitHub repo

Pull Request - State: closed - Opened by schuenke about 1 year ago
Labels: bug-fix

#134 - Remove sigpy dependency and add the files defining RF directly.

Pull Request - State: closed - Opened by btasdelen about 1 year ago - 2 comments

#133 - Performance improvements

Pull Request - State: closed - Opened by FrankZijlstra about 1 year ago - 8 comments
Labels: enhancement, bug-fix

#132 - Several bug fixes in `Sequence`, `add_gradients`, `make_trapezoid`, and `rotate`

Pull Request - State: closed - Opened by FrankZijlstra about 1 year ago
Labels: bug-fix

#131 - Added PNS calculations

Pull Request - State: closed - Opened by FrankZijlstra about 1 year ago - 1 comment
Labels: enhancement

#130 - More pythonic handling of `shape_pieces` in `waveforms_and_times`

Pull Request - State: closed - Opened by FrankZijlstra about 1 year ago
Labels: enhancement

#129 - Making internal time representation integer in units of nanoseconds.

Pull Request - State: open - Opened by btasdelen about 1 year ago - 13 comments
Labels: enhancement

#128 - Bug fixes in Sequence and make_trapezoid

Pull Request - State: closed - Opened by FrankZijlstra about 1 year ago - 4 comments
Labels: bug-fix

#127 - Questions about ADC dead time check

Issue - State: closed - Opened by zhengliuer about 1 year ago - 6 comments

#126 - codespell: add config and action to codespell the code to avoid known typos

Pull Request - State: open - Opened by yarikoptic about 1 year ago - 4 comments
Labels: enhancement

#125 - Bug fixes that produced incorrect test reports

Pull Request - State: closed - Opened by FrankZijlstra about 1 year ago - 3 comments
Labels: bug-fix

#122 - Import with latest version of numpy not possible

Issue - State: closed - Opened by schote over 1 year ago - 1 comment

#121 - Update gre_walkthrough for v1.4.0

Pull Request - State: closed - Opened by bilal-tasdelen over 1 year ago

#120 - dev branch: write_gre.py gives: invalid value encountered in true_divide slice_pos[j] = np.divide(

Issue - State: closed - Opened by Nikbert over 1 year ago - 2 comments

#119 - Sigpy==0.1.23 incompatible with numpy>1.20

Issue - State: closed - Opened by wtclarke over 1 year ago - 6 comments
Labels: bug

#118 - GRE Walkthrough notebook seems to have multiple bugs, with v1.4.0 at least

Issue - State: closed - Opened by curtcorum over 1 year ago - 2 comments

#117 - seq.calculateKspacePP() error on certain non-cartesian trajectories

Issue - State: closed - Opened by pkash16 over 1 year ago - 2 comments

#116 - Pulseq v141 upstream

Pull Request - State: closed - Opened by bilal-tasdelen over 1 year ago

#115 - Replace np.float with np.float64

Pull Request - State: closed - Opened by bilal-tasdelen over 1 year ago

#114 - Hacky fix for waveforms_and_times rf append floating point issue.

Pull Request - State: closed - Opened by btasdelen over 1 year ago
Labels: enhancement, bug-fix

#113 - latest make_sinc_pulse dont return gradient by default

Pull Request - State: closed - Opened by yupbank over 1 year ago - 1 comment

#112 - Negative gyromagnetic ratio

Pull Request - State: closed - Opened by Cwis over 1 year ago - 4 comments

#111 - bug fix to event_lib.py

Pull Request - State: closed - Opened by tblazey over 1 year ago

#110 - sequence.py fix

Pull Request - State: closed - Opened by tblazey over 1 year ago

#109 - Restore gradient_waveforms to fix calculte_kspace

Pull Request - State: closed - Opened by fzimmermann89 over 1 year ago - 1 comment

#108 - bug fixes to event_lib.py and sequence.py

Pull Request - State: closed - Opened by tblazey over 1 year ago - 3 comments

#107 - 'Sequence' object has no attribute 'gradient_waveforms' in Sequence.calculate_kspace

Issue - State: closed - Opened by fzimmermann89 over 1 year ago - 6 comments

#106 - Issue adding new shape

Issue - State: closed - Opened by tblazey over 1 year ago - 4 comments
Labels: enhancement

#105 - Possible bug in sequence.py

Issue - State: closed - Opened by tblazey over 1 year ago - 3 comments
Labels: bug

#104 - duplicate argument in make_arbitrary_rf.py

Issue - State: closed - Opened by rextlfung over 1 year ago - 3 comments

#103 - Fix bug in example jupyter notebook.

Pull Request - State: closed - Opened by nnmurthy over 1 year ago
Labels: bug-fix

#102 - Updating Sequence.set_definition() "val" keyword argument to "value" to match demo scripts

Issue - State: open - Opened by rextlfung over 1 year ago - 6 comments

#101 - Update init.py

Pull Request - State: closed - Opened by calderds over 1 year ago - 1 comment
Labels: bug-fix

#100 - np.int is deprecated in numpy>=1.20.0

Pull Request - State: closed - Opened by skarrea over 1 year ago - 3 comments
Labels: bug-fix

#99 - Fix rounding bug in indexing.

Pull Request - State: closed - Opened by btasdelen over 1 year ago - 2 comments
Labels: bug-fix

#98 - Bug in: 'def gradient_waveforms' in 'sequence.py'

Issue - State: closed - Opened by Nikbert over 1 year ago - 9 comments
Labels: bug

#96 - Full api doc for pypulseq.Opts

Issue - State: closed - Opened by zhengliuer over 1 year ago - 6 comments

#94 - Units + doc again

Issue - State: closed - Opened by schmidtijoe almost 2 years ago - 3 comments
Labels: documentation

#93 - waveforms_and_times append RF fixes

Pull Request - State: closed - Opened by bilal-tasdelen almost 2 years ago - 5 comments
Labels: bug-fix

#92 - Rf fixes

Pull Request - State: closed - Opened by bilal-tasdelen almost 2 years ago
Labels: bug-fix

GitHub / imr-framework/pypulseq issues and pull requests