imi-bigpicture/wsidicomizer issues and pull requests

#119 - Fixes

Pull Request - State: closed - Opened by erikogabrielsson 19 days ago

#118 - Thumbnail image not included in the conversion result

Issue - State: open - Opened by fedorov 20 days ago

#117 - wsidicomizer 0.15.1 does not work with the current zarr 3.0.1

Issue - State: closed - Opened by fedorov 20 days ago - 1 comment

#116 - Bioformat fixes

Pull Request - State: closed - Opened by erikogabrielsson 24 days ago

#115 - OpenSlide compatibility

Issue - State: closed - Opened by FabianHoerst about 2 months ago - 2 comments

#114 - Created instance datasets for levels with index > 0 have `ImageType==["ORIGINAL", "PRIMARY", "VOLUME", "RESAMPLED"]`

Issue - State: closed - Opened by jleuschn 3 months ago - 3 comments

#113 - Try removing timezone and trailing second decimals when parsing czi aquisition datetime

Pull Request - State: closed - Opened by erikogabrielsson 3 months ago

#112 - Zeiss Datetime

Issue - State: closed - Opened by maxfscher 4 months ago - 2 comments

#111 - Isyntax

Pull Request - State: closed - Opened by erikogabrielsson 4 months ago

#110 - Numpy 2 and pydicom 3

Pull Request - State: closed - Opened by erikogabrielsson 4 months ago

#109 - imagecodecs version

Issue - State: closed - Opened by 11777840 4 months ago - 2 comments

#108 - Hi, I’m using a TIFF file that doesn’t have sufficient pixel resolution to zoom in at the desired level. I’m currently able to zoom to 10µm but would like to zoom to 5µm. However, I can't use a Super-Resolution model. Is it possible to extend the zoom level using WSIDicomizer?

Issue - State: closed - Opened by anilSigTuple 4 months ago - 1 comment

#107 - Update opentile

Pull Request - State: closed - Opened by erikogabrielsson 8 months ago

#106 - Support for annotations

Issue - State: open - Opened by bchandarr 9 months ago - 4 comments

#105 - Czi fixes

Pull Request - State: closed - Opened by erikogabrielsson 10 months ago

#104 - Problem when converting and uploading in orthanc

Issue - State: closed - Opened by LuisOtavioSantos 10 months ago - 7 comments

#103 - Add `add_missing_levels` parameter to cli

Pull Request - State: closed - Opened by erikogabrielsson 10 months ago

#102 - Bioformats fixes

Pull Request - State: closed - Opened by erikogabrielsson 10 months ago

#101 - SVS to DICOM Conversion Resulting in Automatic Zooming Issue in Viewer

Issue - State: closed - Opened by abespalko 11 months ago - 3 comments

#100 - JSON-Documentation request

Issue - State: closed - Opened by FabianHoerst 11 months ago - 2 comments

#99 - Fix handling of pyramid index

Pull Request - State: closed - Opened by erikogabrielsson 11 months ago

#98 - Fix missing to close file handle

Pull Request - State: closed - Opened by erikogabrielsson 12 months ago

#97 - Update packages and fix action

Pull Request - State: closed - Opened by erikogabrielsson 12 months ago

#96 - Icc profile

Pull Request - State: closed - Opened by erikogabrielsson about 1 year ago

#95 - ICC Profile in DICOM conversion

Issue - State: closed - Opened by FabianHoerst about 1 year ago - 5 comments

#94 - 3.12

Pull Request - State: closed - Opened by erikogabrielsson about 1 year ago

#93 - Metadata

Pull Request - State: closed - Opened by erikogabrielsson about 1 year ago

#92 - Levels flag not working

Issue - State: closed - Opened by saikrishnaksbs about 1 year ago - 2 comments

#91 - Fix empty tile

Pull Request - State: closed - Opened by erikogabrielsson about 1 year ago

#90 - Encoding

Pull Request - State: closed - Opened by erikogabrielsson about 1 year ago

#89 - Handling of missing properties

Issue - State: closed - Opened by ChristianMarzahl over 1 year ago - 8 comments

#88 - Update dependency requirements to allow newer tifffile and imagecodecs

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#87 - Conversion of different files results in all black tiles

Issue - State: closed - Opened by fhnaumann over 1 year ago - 9 comments

#86 - Update certifi

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#85 - Update lock for certifi

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#84 - Unable to convert some Openslide file formats

Issue - State: closed - Opened by ashmistry36 over 1 year ago - 12 comments

#83 - Bioformats tile size

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#82 - Connection between tile_size, NumberOfFrames, Rows/Columns and TotalPixelMatrixRows/TotalPixelMatrixColumns

Issue - State: closed - Opened by fhnaumann over 1 year ago - 2 comments

#81 - Release 0.10.0 fix

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#80 - Release 0.10.0

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#79 - Relax python requirement, bump wsidicom and opentile

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#78 - Fix detect blank tile

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#77 - Openslide 4

Pull Request - State: closed - Opened by erikogabrielsson over 1 year ago

#76 - Citing this library

Issue - State: open - Opened by fhnaumann over 1 year ago - 2 comments

#75 - wsidicomizer does not work with numpy release 1.25 for some formats

Issue - State: closed - Opened by fhnaumann over 1 year ago - 3 comments

#74 - wsidicomizer (and wsidicom) do not work with newest pydicom release 2.4

Issue - State: closed - Opened by fhnaumann over 1 year ago - 4 comments

#73 - Fix missing label argument in cli

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#72 - Upcoming OpenSlide release will change library filename

Issue - State: closed - Opened by bgilbert almost 2 years ago - 4 comments

#71 - Frame-specific information in DICOM file instance

Issue - State: closed - Opened by wand555 almost 2 years ago - 3 comments

#70 - Jpeg2000 quality

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#69 - Transfer Syntax and lossless JPEG2000

Issue - State: closed - Opened by Daniel300000 almost 2 years ago - 4 comments

#68 - Fix readme

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#67 - Install with openslide support fails

Issue - State: closed - Opened by Daniel300000 almost 2 years ago - 2 comments

#66 - Handle ICC profile when there is no profile in source file

Issue - State: closed - Opened by erikogabrielsson almost 2 years ago - 1 comment

#65 - Fix entrypoints for cli

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#64 - Wsidicomizer command line tool not working

Issue - State: closed - Opened by hhoeflin almost 2 years ago - 1 comment

#63 - Bioformats

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#62 - Source

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#61 - Support for Philips isyntax images

Issue - State: closed - Opened by shaneahmed almost 2 years ago - 8 comments

#60 - Remove OpenSlide as a dependency

Issue - State: closed - Opened by sarthakpati almost 2 years ago - 4 comments

#59 - 0.8.0

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#58 - Image origin

Pull Request - State: closed - Opened by erikogabrielsson almost 2 years ago

#57 - Make it easier to specify the study uid

Issue - State: closed - Opened by erikogabrielsson almost 2 years ago - 1 comment