Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / imagingdatacommons/idc-tutorials issues and pull requests

#75 - Add notebook describing conversion with supplemental metadata

Pull Request - State: open - Opened by melissalinkert 4 months ago - 1 comment

#74 - Pathology notebook update

Pull Request - State: closed - Opened by DanielaSchacherer 5 months ago - 1 comment

#74 - Pathology notebook update

Pull Request - State: closed - Opened by DanielaSchacherer 5 months ago - 1 comment

#73 - pathology getting started notebook update

Pull Request - State: closed - Opened by DanielaSchacherer 5 months ago - 1 comment

#73 - pathology getting started notebook update

Pull Request - State: closed - Opened by DanielaSchacherer 5 months ago - 1 comment

#72 - Investigate nbmake for testing

Issue - State: open - Opened by fedorov 6 months ago

#72 - Investigate nbmake for testing

Issue - State: open - Opened by fedorov 6 months ago

#71 - fixed idc-index version

Pull Request - State: closed - Opened by DanielaSchacherer 6 months ago - 1 comment

#70 - ENH: added new introductory notebook

Pull Request - State: closed - Opened by DanielaSchacherer 6 months ago - 1 comment

#70 - ENH: added new introductory notebook

Pull Request - State: closed - Opened by DanielaSchacherer 6 months ago - 1 comment

#69 - Add analysis notebook using MCMICRO

Pull Request - State: open - Opened by erindiel 8 months ago - 4 comments

#69 - Add analysis notebook using MCMICRO

Pull Request - State: open - Opened by erindiel 8 months ago - 4 comments

#68 - Add QuPath viewing notebook

Pull Request - State: closed - Opened by melissalinkert 8 months ago - 6 comments

#68 - Add QuPath viewing notebook

Pull Request - State: closed - Opened by melissalinkert 8 months ago - 6 comments

#67 - Add notebook with conversion examples

Pull Request - State: open - Opened by erindiel 8 months ago - 7 comments

#67 - Add notebook with conversion examples

Pull Request - State: open - Opened by erindiel 8 months ago - 7 comments

#66 - Reviewed RMS notebook

Pull Request - State: closed - Opened by DanielaSchacherer 8 months ago - 1 comment

#65 - Refinements for ISBI Tutorial

Pull Request - State: closed - Opened by DanielaSchacherer 8 months ago - 1 comment

#65 - Refinements for ISBI Tutorial

Pull Request - State: closed - Opened by DanielaSchacherer 8 months ago - 1 comment

#64 - fix links and try to fix image preview

Pull Request - State: closed - Opened by fedorov 9 months ago - 1 comment

#64 - fix links and try to fix image preview

Pull Request - State: closed - Opened by fedorov 9 months ago - 1 comment

#63 - Update getting started to use idc-index

Pull Request - State: closed - Opened by fedorov 9 months ago - 1 comment

#62 - RMS notebook updates

Pull Request - State: closed - Opened by DanielaSchacherer 9 months ago - 7 comments

#61 - Fixed spelling mistake in Colab link

Pull Request - State: closed - Opened by DanielaSchacherer 9 months ago - 1 comment

#60 - Improvements to ISBI Tutorial

Pull Request - State: closed - Opened by DanielaSchacherer 9 months ago - 1 comment

#59 - Added ISBI'24 Tutorial

Pull Request - State: closed - Opened by DanielaSchacherer 9 months ago - 1 comment

#58 - Update on RMS annotation notebook

Pull Request - State: closed - Opened by DanielaSchacherer 9 months ago - 1 comment

#57 - initial version SR annotations demo notebook

Pull Request - State: closed - Opened by fedorov 9 months ago - 1 comment

#56 - Update colab images list

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago

#54 - Update colab images list

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#53 - Update the gha message body while submitting the PR

Issue - State: open - Opened by vkt1414 12 months ago

#52 - Update colab images list

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 4 comments

#51 - WIP: fixing mhub notebook regression and simplifications

Pull Request - State: open - Opened by fedorov about 1 year ago - 3 comments

#50 - IDC API colab submit

Pull Request - State: closed - Opened by bcli4d about 1 year ago - 1 comment

#49 - mhub notebook is broken

Issue - State: open - Opened by fedorov about 1 year ago
Labels: bug

#48 - Create keep-alive.yml

Pull Request - State: closed - Opened by vkt1414 about 1 year ago

#47 - Fix github actions

Pull Request - State: closed - Opened by vkt1414 about 1 year ago - 1 comment

#46 - /bin/bash: line 1: plastimatch: command not found

Issue - State: open - Opened by TrinhNguyenP about 1 year ago - 5 comments

#45 - Add examples of using idc-index from R

Issue - State: open - Opened by fedorov about 1 year ago

#43 - add IDC MICCAI'23 tutorial MHub notebook

Pull Request - State: closed - Opened by fedorov about 1 year ago - 1 comment

#42 - more reorganization of the repo

Pull Request - State: closed - Opened by fedorov about 1 year ago - 1 comment

#41 - Reorganization and cleanup of the repository

Pull Request - State: closed - Opened by fedorov about 1 year ago

#40 - do not commit the updated papermill output notebooks

Pull Request - State: closed - Opened by fedorov about 1 year ago

#39 - lock python and pip package versions

Pull Request - State: closed - Opened by vkt1414 over 1 year ago - 1 comment

#36 - Clean up notebook for IDC on AWS notebook

Pull Request - State: closed - Opened by flamingofugang over 1 year ago - 1 comment

#35 - Bump urllib3 from 1.26.7 to 1.26.18 in /scripts

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#34 - add IDC on AWS tutorial notebook

Pull Request - State: closed - Opened by flamingofugang over 1 year ago - 1 comment

#33 - Bump urllib3 from 1.26.7 to 1.26.17 in /scripts

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#32 - update segmentation primer notebook

Pull Request - State: closed - Opened by fedorov over 1 year ago - 2 comments

#31 - Add the Colab R test notebook

Pull Request - State: closed - Opened by denbonte over 1 year ago - 5 comments

#30 - install Plastimatch

Issue - State: closed - Opened by kiratben over 1 year ago - 5 comments

#29 - Bump certifi from 2022.12.7 to 2023.7.22 in /scripts

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#28 - Replace subversion with git --depth 1 for repository checkout

Issue - State: open - Opened by mhalle over 1 year ago - 2 comments

#27 - Bump grpcio from 1.41.0 to 1.53.0 in /scripts

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#26 - Bump requests from 2.26.0 to 2.31.0 in /scripts

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#25 - Missing metadata tag

Pull Request - State: closed - Opened by bnmajor over 1 year ago - 1 comment

#24 - Bump itkwidgets version

Pull Request - State: closed - Opened by bnmajor over 1 year ago - 2 comments

#23 - Created using Colaboratory

Pull Request - State: closed - Opened by bcli4d almost 2 years ago - 5 comments

#22 - Update examples to use itkwidgets for visualization

Pull Request - State: closed - Opened by bnmajor almost 2 years ago - 10 comments

#21 - Investigate replacement of all NC collections used with CC ones

Issue - State: open - Opened by fedorov almost 2 years ago

#20 - Add section about calculating the size of the cohort

Issue - State: open - Opened by fedorov almost 2 years ago

#19 - test reviewnb

Pull Request - State: closed - Opened by fedorov almost 2 years ago - 1 comment

#18 - Test reviewnb

Pull Request - State: closed - Opened by fedorov almost 2 years ago - 1 comment

#17 - Bump protobuf from 3.18.1 to 3.18.3 in /scripts

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#16 - found a potential typo

Pull Request - State: closed - Opened by vkt1414 about 2 years ago

#15 - Bump certifi from 2021.10.8 to 2022.12.7 in /scripts

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#14 - reorganization of the introduction tutorial series

Pull Request - State: closed - Opened by fedorov about 2 years ago

#13 - Add example of downloading bypassing gcloud

Issue - State: open - Opened by fedorov about 2 years ago

#12 - Error from loading a Keras model

Issue - State: open - Opened by peterwu19881230 over 2 years ago - 2 comments

#11 - plastimatch command returned non-zero exit status 1

Issue - State: open - Opened by peterwu19881230 over 2 years ago - 2 comments

#10 - Now supports PKCE

Pull Request - State: closed - Opened by bcli4d over 2 years ago

#9 - Request failed: Forbidden when running How_to_use_IDC_APIs.ipynb

Issue - State: closed - Opened by peterwu19881230 over 2 years ago - 6 comments

#8 - Fix Format BigQuery for example notebooks

Issue - State: open - Opened by ccosmin97 over 2 years ago - 1 comment

#7 - adding notebook for body part regression

Pull Request - State: closed - Opened by deepakri201 over 2 years ago - 1 comment

#6 - 'gs://idc-tcia-nsclc-radiomics/dicom/' link broken

Issue - State: closed - Opened by adwaykanhere over 2 years ago - 8 comments

#5 - Fix thread arg

Pull Request - State: closed - Opened by wlongabaugh over 3 years ago

#4 - Add new dependencies

Pull Request - State: closed - Opened by wlongabaugh over 3 years ago

#3 - bug fixes and improvements

Pull Request - State: closed - Opened by fedorov over 3 years ago

#2 - Duplicate from IDC-API

Pull Request - State: closed - Opened by bcli4d over 3 years ago

#1 - small refinements and todo items added

Pull Request - State: closed - Opened by fedorov over 3 years ago - 1 comment