Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / imagingdatacommons/etl issues and pull requests

#46 - Ingest RMS clinical data

Issue - State: open - Opened by fedorov over 1 year ago - 18 comments
Labels: clinical data

#45 - Investigate ingestion of HTAN related data

Issue - State: open - Opened by fedorov over 1 year ago - 2 comments
Labels: clinical data

#44 - Duke-Breast-Cancer-MRI clinical data is missing

Issue - State: open - Opened by fedorov almost 2 years ago - 1 comment
Labels: bug, clinical data

#43 - Values for `dicom_patient_id` are invalid for the `acrin_6698` collection

Issue - State: closed - Opened by fedorov over 2 years ago - 2 comments
Labels: bug, clinical data

#42 - acrin_6698 sbrgrade NAs are replaced with nulls

Issue - State: open - Opened by fedorov over 2 years ago - 2 comments
Labels: bug, clinical data

#41 - table_metadata should indicate whether table dictionary was parsed from sources or derived

Issue - State: open - Opened by fedorov over 2 years ago - 2 comments
Labels: clinical data

#40 - Use fully resolved versioned table names in all places

Issue - State: closed - Opened by fedorov over 2 years ago - 1 comment
Labels: clinical data

#39 - dicom_patient_id appears to be missing in several clinical tables

Issue - State: open - Opened by fedorov over 2 years ago - 2 comments
Labels: clinical data

#38 - Inconsistencies identified for the ISPY1 clinical table

Issue - State: open - Opened by fedorov over 2 years ago - 4 comments
Labels: clinical data

#36 - Add regression testing to confirm consistency of clinical table schemas with column_metadata

Issue - State: open - Opened by fedorov over 2 years ago - 2 comments
Labels: clinical data

#35 - Inconsistencies identified for hnscc_3dct_rt_clinical table

Issue - State: closed - Opened by fedorov over 2 years ago - 2 comments
Labels: clinical data

#34 - Consider renaming "variable" to "column" in "column_metadata"

Issue - State: closed - Opened by fedorov over 2 years ago - 2 comments
Labels: clinical data

#33 - variable_label should not be blank

Issue - State: closed - Opened by fedorov over 2 years ago - 3 comments
Labels: clinical data

#32 - [clinical] collection_id should not be an array

Issue - State: closed - Opened by fedorov over 2 years ago - 3 comments
Labels: clinical data

#31 - v8 and v9 revisions

Pull Request - State: closed - Opened by bcli4d almost 3 years ago

#30 - Define BQ layout of clinical data tables

Issue - State: closed - Opened by fedorov almost 3 years ago - 1 comment
Labels: clinical data

#29 - Clinical data per-table metadata tracking

Issue - State: closed - Opened by fedorov almost 3 years ago - 3 comments
Labels: clinical data

#28 - [clinical] Support NLST clinical data

Issue - State: closed - Opened by fedorov almost 3 years ago - 9 comments
Labels: clinical data

#27 - Map the patient identifier column in the clinical collections to the DICOM patientID

Issue - State: closed - Opened by G-White-ISB almost 3 years ago - 2 comments
Labels: clinical data

#26 - [clinical] Add PatientID to the per-collection tables (whenever it is not already available)

Issue - State: closed - Opened by fedorov almost 3 years ago - 7 comments
Labels: clinical data

#25 - [clinical] Add column to point to the dataset/table from the dictionary

Issue - State: closed - Opened by fedorov almost 3 years ago - 8 comments
Labels: clinical data

#24 - [clinical] Capture provenance of the collection-specific columns

Issue - State: closed - Opened by fedorov almost 3 years ago - 1 comment
Labels: clinical data

#23 - [clinical] Clinical data "inventory" table

Issue - State: closed - Opened by fedorov about 3 years ago - 4 comments
Labels: clinical data

#22 - [clinical] Fix out of order columns in the per-collection tables

Issue - State: closed - Opened by fedorov about 3 years ago - 5 comments
Labels: clinical data

#21 - [clinical] CPTAC clinical metadata

Issue - State: closed - Opened by fedorov about 3 years ago - 13 comments
Labels: clinical data

#20 - [clinical] Improve harmonization of ACRIN and non-ACRIN tables schema

Issue - State: closed - Opened by fedorov about 3 years ago - 2 comments
Labels: clinical data

#19 - [clinical] table prefix should use idc_webapp_collection_id from original_collections_metadata

Issue - State: closed - Opened by fedorov about 3 years ago - 2 comments
Labels: clinical data

#18 - S27wc

Pull Request - State: closed - Opened by bcli4d about 3 years ago

#17 - S24 whc

Pull Request - State: closed - Opened by bcli4d over 3 years ago

#16 - V3 specific versions of json and dicom_all files.

Pull Request - State: closed - Opened by bcli4d over 3 years ago

#15 - add definitions for helper views schemas

Pull Request - State: closed - Opened by fedorov over 3 years ago

#14 - Make column names capitalization consistent

Issue - State: open - Opened by fedorov over 3 years ago

#13 - Cleanup

Pull Request - State: closed - Opened by bcli4d over 3 years ago

#12 - Changed dicom_all column names crdc_XXX_uuid --> XXX_uuid

Pull Request - State: closed - Opened by bcli4d over 3 years ago

#11 - Preparing for v3.

Pull Request - State: closed - Opened by bcli4d over 3 years ago

#11 - Preparing for v3.

Pull Request - State: closed - Opened by bcli4d over 3 years ago

#10 - S17wc

Pull Request - State: closed - Opened by bcli4d almost 4 years ago

#9 - Added tcia_species and tcia_cancerType to dicom_all

Pull Request - State: closed - Opened by bcli4d about 4 years ago

#8 - S15wc

Pull Request - State: closed - Opened by bcli4d about 4 years ago

#7 - add a folder to maintain BQ QA queries

Pull Request - State: closed - Opened by fedorov over 4 years ago - 2 comments

#6 - S15wc

Pull Request - State: closed - Opened by bcli4d over 4 years ago

#5 - S12whc

Pull Request - State: closed - Opened by bcli4d over 4 years ago

#4 - Consider adding instance size to the BQ tables

Issue - State: closed - Opened by fedorov over 4 years ago - 4 comments

#3 - Wjrl dev

Pull Request - State: closed - Opened by wlongabaugh over 4 years ago

#2 - Rows column populated incorrectly

Issue - State: closed - Opened by fedorov about 5 years ago - 9 comments

#1 - Missing mergeschemas.py

Issue - State: closed - Opened by fedorov about 5 years ago - 4 comments