Ecosyste.ms: Issues

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GitHub / imageomics/pybioclip issues and pull requests

#36 - Add automated testing config

Pull Request - State: closed - Opened by johnbradley 5 months ago

#36 - Add automated testing config

Pull Request - State: closed - Opened by johnbradley 5 months ago

#35 - Add documentation about using OpenCLIP models to README

Issue - State: closed - Opened by hlapp 5 months ago
Labels: documentation

#35 - Add documentation about using OpenCLIP models to README

Issue - State: closed - Opened by hlapp 5 months ago
Labels: documentation

#35 - Add documentation about using OpenCLIP models to README

Issue - State: closed - Opened by hlapp 5 months ago
Labels: documentation

#34 - Increment version

Issue - State: closed - Opened by hlapp 5 months ago - 1 comment

#34 - Increment version

Issue - State: closed - Opened by hlapp 5 months ago - 1 comment

#34 - Increment version

Issue - State: closed - Opened by hlapp 5 months ago - 1 comment

#33 - Adds ability to provide other OpenCLIP models and checkpoints

Pull Request - State: closed - Opened by hlapp 5 months ago

#33 - Adds ability to provide other OpenCLIP models and checkpoints

Pull Request - State: closed - Opened by hlapp 5 months ago

#33 - Adds ability to provide other OpenCLIP models and checkpoints

Pull Request - State: closed - Opened by hlapp 5 months ago

#32 - Load model checkpoint with `weights_only=True`

Issue - State: closed - Opened by hlapp 5 months ago - 7 comments

#32 - Load model checkpoint with `weights_only=True`

Issue - State: closed - Opened by hlapp 5 months ago - 7 comments

#32 - Load model checkpoint with `weights_only=True`

Issue - State: closed - Opened by hlapp 5 months ago - 7 comments

#31 - Allows specifying top k results for custom class list

Pull Request - State: closed - Opened by hlapp 5 months ago

#31 - Allows specifying top k results for custom class list

Pull Request - State: closed - Opened by hlapp 5 months ago

#31 - Allows specifying top k results for custom class list

Pull Request - State: closed - Opened by hlapp 5 months ago

#30 - Allow providing custom classes as a file

Issue - State: closed - Opened by hlapp 5 months ago
Labels: enhancement

#30 - Allow providing custom classes as a file

Issue - State: closed - Opened by hlapp 5 months ago
Labels: enhancement

#30 - Allow providing custom classes as a file

Issue - State: closed - Opened by hlapp 5 months ago
Labels: enhancement

#29 - Allow providing custom bins for summing scores

Issue - State: closed - Opened by hlapp 5 months ago - 2 comments
Labels: enhancement

#29 - Allow providing custom bins for summing scores

Issue - State: closed - Opened by hlapp 5 months ago - 2 comments
Labels: enhancement

#29 - Allow providing custom bins for summing scores

Issue - State: closed - Opened by hlapp 5 months ago - 2 comments
Labels: enhancement

#28 - Allow top-k option for custom class list

Issue - State: closed - Opened by hlapp 5 months ago
Labels: enhancement

#28 - Allow top-k option for custom class list

Issue - State: closed - Opened by hlapp 5 months ago
Labels: enhancement

#28 - Allow top-k option for custom class list

Issue - State: closed - Opened by hlapp 5 months ago
Labels: enhancement

#27 - Docker container

Issue - State: closed - Opened by hlapp 5 months ago - 11 comments

#27 - Docker container

Issue - State: closed - Opened by hlapp 5 months ago - 11 comments

#27 - Docker container

Issue - State: closed - Opened by hlapp 5 months ago - 11 comments

#25 - Create CITATION.cff

Pull Request - State: closed - Opened by johnbradley 6 months ago

#24 - Makes synopsis in the README more descriptive

Pull Request - State: closed - Opened by hlapp 6 months ago

#24 - Makes synopsis in the README more descriptive

Pull Request - State: closed - Opened by hlapp 6 months ago

#24 - Makes synopsis in the README more descriptive

Pull Request - State: closed - Opened by hlapp 6 months ago

#23 - Using Other CLIP Checkpoints

Issue - State: closed - Opened by work4cs 6 months ago

#23 - Using Other CLIP Checkpoints

Issue - State: closed - Opened by work4cs 6 months ago

#23 - Using Other CLIP Checkpoints

Issue - State: closed - Opened by work4cs 6 months ago

#22 - Update notebooks pip commands

Pull Request - State: closed - Opened by johnbradley 6 months ago

#22 - Update notebooks pip commands

Pull Request - State: closed - Opened by johnbradley 6 months ago

#22 - Update notebooks pip commands

Pull Request - State: closed - Opened by johnbradley 6 months ago

#21 - Fixes badges to use the correct package name

Pull Request - State: closed - Opened by hlapp 6 months ago

#21 - Fixes badges to use the correct package name

Pull Request - State: closed - Opened by hlapp 6 months ago

#21 - Fixes badges to use the correct package name

Pull Request - State: closed - Opened by hlapp 6 months ago

#20 - Update installation step in example notebooks

Issue - State: closed - Opened by johnbradley 6 months ago

#20 - Update installation step in example notebooks

Issue - State: closed - Opened by johnbradley 6 months ago

#20 - Update installation step in example notebooks

Issue - State: closed - Opened by johnbradley 6 months ago

#19 - Prep to release on pypi

Pull Request - State: closed - Opened by johnbradley 6 months ago

#19 - Prep to release on pypi

Pull Request - State: closed - Opened by johnbradley 6 months ago

#19 - Prep to release on pypi

Pull Request - State: closed - Opened by johnbradley 6 months ago

#18 - Allow batch processing of images

Pull Request - State: closed - Opened by johnbradley 7 months ago

#18 - Allow batch processing of images

Pull Request - State: closed - Opened by johnbradley 7 months ago

#18 - Allow batch processing of images

Pull Request - State: closed - Opened by johnbradley 7 months ago

#17 - Add option to save cached embeddings to disk for re-use

Issue - State: open - Opened by thompsonmj 7 months ago - 1 comment

#17 - Add option to save cached embeddings to disk for re-use

Issue - State: open - Opened by thompsonmj 7 months ago - 1 comment

#17 - Add option to save cached embeddings to disk for re-use

Issue - State: open - Opened by thompsonmj 7 months ago - 1 comment

#16 - Avoid recomputing text embeddings for custom labels

Pull Request - State: closed - Opened by johnbradley 7 months ago

#16 - Avoid recomputing text embeddings for custom labels

Pull Request - State: closed - Opened by johnbradley 7 months ago

#16 - Avoid recomputing text embeddings for custom labels

Pull Request - State: closed - Opened by johnbradley 7 months ago

#15 - Cache text embeddings

Issue - State: closed - Opened by johnbradley 7 months ago

#15 - Cache text embeddings

Issue - State: closed - Opened by johnbradley 7 months ago

#15 - Cache text embeddings

Issue - State: closed - Opened by johnbradley 7 months ago

#14 - Predict from list of PIL images in CustomLabelsClassifier

Pull Request - State: closed - Opened by yanis-falaki 7 months ago - 4 comments

#14 - Predict from list of PIL images in CustomLabelsClassifier

Pull Request - State: closed - Opened by yanis-falaki 7 months ago - 4 comments

#13 - Fix for RGBA png files

Pull Request - State: closed - Opened by johnbradley 7 months ago

#13 - Fix for RGBA png files

Pull Request - State: closed - Opened by johnbradley 7 months ago

#12 - Convert Image to RGB

Issue - State: closed - Opened by yanis-falaki 7 months ago - 1 comment

#12 - Convert Image to RGB

Issue - State: closed - Opened by yanis-falaki 7 months ago - 1 comment

#11 - Allow batch processing via GPU

Issue - State: closed - Opened by johnbradley 7 months ago

#11 - Allow batch processing via GPU

Issue - State: closed - Opened by johnbradley 7 months ago

#10 - Add embed command

Pull Request - State: closed - Opened by johnbradley 7 months ago - 1 comment

#10 - Add embed command

Pull Request - State: closed - Opened by johnbradley 7 months ago - 1 comment

#9 - Add device parameter and examples

Pull Request - State: closed - Opened by johnbradley 9 months ago - 5 comments

#9 - Add device parameter and examples

Pull Request - State: closed - Opened by johnbradley 9 months ago - 5 comments

#8 - Improve performance and prediction results

Pull Request - State: closed - Opened by johnbradley 9 months ago

#8 - Improve performance and prediction results

Pull Request - State: closed - Opened by johnbradley 9 months ago

#7 - Add tests and automate running them

Issue - State: closed - Opened by johnbradley 10 months ago

#7 - Add tests and automate running them

Issue - State: closed - Opened by johnbradley 10 months ago

#6 - Expose a ability to obtain image embeddings

Issue - State: closed - Opened by hlapp 10 months ago - 4 comments
Labels: enhancement

#6 - Expose a ability to obtain image embeddings

Issue - State: closed - Opened by hlapp 10 months ago - 4 comments
Labels: enhancement

#5 - Add argument for CLI that allows GPU as Torch device

Issue - State: closed - Opened by hlapp 10 months ago - 1 comment
Labels: enhancement

#5 - Add argument for CLI that allows GPU as Torch device

Issue - State: closed - Opened by hlapp 10 months ago - 1 comment
Labels: enhancement

#4 - Add citation recommendations that include citing the BioCLIP paper

Issue - State: closed - Opened by hlapp 10 months ago - 3 comments
Labels: documentation

#4 - Add citation recommendations that include citing the BioCLIP paper

Issue - State: closed - Opened by hlapp 10 months ago - 3 comments
Labels: documentation

#3 - Add bioclip command line tool

Pull Request - State: closed - Opened by johnbradley 10 months ago - 2 comments

#3 - Add bioclip command line tool

Pull Request - State: closed - Opened by johnbradley 10 months ago - 2 comments

#2 - Change repo and/or package name to de-emphasize CLI

Issue - State: closed - Opened by hlapp 10 months ago - 7 comments

#1 - JSON result should structure the predicted class label

Issue - State: closed - Opened by hlapp 10 months ago - 1 comment
Labels: enhancement