imagej/napari-imagej issues and pull requests

#101 - Give a better error message on macOS about headless/interactive

Issue - State: closed - Opened by ctrueden about 2 years ago - 1 comment
Labels: documentation

#100 - Add support for conversion of ImageDisplay and DatasetView

Issue - State: closed - Opened by ctrueden about 2 years ago - 4 comments
Labels: bug, enhancement

#99 - Use dynaconf for user preferences

Pull Request - State: closed - Opened by gselzer about 2 years ago - 4 comments
Labels: bug, enhancement

#98 - 'settings.yml' not found : the plugin cannot be started

Issue - State: closed - Opened by NicoKiaru about 2 years ago - 3 comments
Labels: bug

#96 - MutableOutputWidgets not appearing for Mutable Outputs

Issue - State: closed - Opened by gselzer over 2 years ago - 2 comments
Labels: bug

#95 - Re-organize project to improve readability, documentation

Pull Request - State: closed - Opened by gselzer over 2 years ago - 2 comments
Labels: documentation, enhancement

#94 - Allow ImageJ Legacy inclusion as a configurable setting

Issue - State: closed - Opened by gselzer over 2 years ago - 3 comments
Labels: enhancement

#93 - Re-enable imagej functionality after disposal

Issue - State: closed - Opened by gselzer over 2 years ago - 4 comments
Labels: bug

#92 - Allow scripts folder directory configuration

Issue - State: closed - Opened by gselzer over 2 years ago - 6 comments
Labels: enhancement

#91 - Improve data transfer button icons

Issue - State: closed - Opened by gselzer over 2 years ago - 2 comments
Labels: enhancement

#90 - Provide special thought to headful-only search results

Issue - State: open - Opened by gselzer over 2 years ago - 2 comments
Labels: enhancement

#89 - Provide better access to local ImageJ2 installation

Pull Request - State: closed - Opened by gselzer over 2 years ago - 2 comments
Labels: enhancement

#88 - Layer outputs not appearing in layer list on Windows

Issue - State: closed - Opened by gselzer over 2 years ago - 4 comments
Labels: bug, blocked

#87 - Surface <-> Mesh Conversions

Pull Request - State: closed - Opened by gselzer over 2 years ago - 5 comments
Labels: enhancement

#86 - Use SearchService for asynchronous search

Pull Request - State: closed - Opened by gselzer over 2 years ago - 8 comments
Labels: enhancement

#85 - Improving documentation with a better README

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#84 - Use QThread where applicable

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment
Labels: enhancement

#83 - Set the output type of module execution functions to List[Layer]

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment
Labels: enhancement

#82 - Change LayerDataTuple occurrences to Layers

Pull Request - State: closed - Opened by gselzer over 2 years ago
Labels: enhancement

#81 - Use setup-qt-libs action

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#80 - Change the Result Tables to a TreeWidget

Pull Request - State: closed - Opened by gselzer over 2 years ago - 3 comments

#79 - Add suffixes to new layers to prevent overwritten outputs

Issue - State: closed - Opened by gselzer over 2 years ago
Labels: bug

#78 - Propagate Java Exceptions to napari

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment
Labels: bug, enhancement

#77 - Ensure that errors in Java appear coherently within napari

Issue - State: closed - Opened by gselzer over 2 years ago - 12 comments
Labels: enhancement

#76 - Fix keyboard shortcut bugs

Issue - State: closed - Opened by gselzer over 2 years ago
Labels: bug

#75 - Improve search speed by using SearchService to search asynchronously

Issue - State: closed - Opened by gselzer over 2 years ago
Labels: enhancement

#74 - Support enum like types semi extensibly

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#73 - Consider exposing SciJava modules to the napari assistant

Issue - State: open - Opened by ctrueden over 2 years ago - 2 comments
Labels: enhancement

#72 - MutableOutputWidget: "New" button is "first", although it shows up second.

Issue - State: closed - Opened by gselzer over 2 years ago
Labels: bug

#71 - Support "Enum"-like types semi-extensibly

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment
Labels: enhancement

#70 - Improve keyboard behavior

Pull Request - State: closed - Opened by gselzer over 2 years ago - 8 comments
Labels: enhancement

#69 - Support ImageJ Mesh <-> Surfaces conversions

Issue - State: closed - Opened by gselzer over 2 years ago
Labels: enhancement

#68 - 66 persistent vs modal initialization widgets

Pull Request - State: closed - Opened by gselzer over 2 years ago - 2 comments
Labels: enhancement

#67 - Ensure Optional Mutable Layer Outputs are returned, not updated

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#66 - Persistent vs. Modal Initialization Widgets

Issue - State: closed - Opened by gselzer over 2 years ago - 4 comments
Labels: enhancement

#65 - IllegalArgumentException from LoadInputsPreprocessor on Ops with Preallocated Outputs

Issue - State: closed - Opened by gselzer over 2 years ago - 2 comments
Labels: bug

#64 - Add a New Image Button for preallocated outputs

Pull Request - State: closed - Opened by gselzer over 2 years ago - 2 comments
Labels: enhancement

#63 - Add Github Action for isort

Pull Request - State: closed - Opened by gselzer over 2 years ago - 3 comments

#62 - Support ColorRGB

Issue - State: open - Opened by gselzer over 2 years ago - 2 comments

#61 - Ship example script

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#60 - Change button name from Run to Initialize

Pull Request - State: closed - Opened by gselzer over 2 years ago - 6 comments

#59 - Make Widgets.js work, and ship a copy of it for testing

Issue - State: closed - Opened by ctrueden over 2 years ago - 3 comments

#58 - Remove original ImageJ with add_legacy=False

Pull Request - State: closed - Opened by gselzer over 2 years ago - 11 comments

#57 - Mutate, but do not return, mutable arguments

Pull Request - State: closed - Opened by gselzer over 2 years ago

#56 - napari-imagej can't determine type hint for ArrayImg

Issue - State: closed - Opened by hinerm over 2 years ago - 14 comments

#55 - Consider how to handle long-running plugins

Issue - State: closed - Opened by hinerm over 2 years ago - 2 comments

#54 - Add DEVELOPER ONLY label to display name

Pull Request - State: closed - Opened by gselzer over 2 years ago

#53 - Give search results more usability

Issue - State: closed - Opened by hinerm over 2 years ago - 3 comments

#52 - Selected result doesn't update after searching

Issue - State: closed - Opened by hinerm over 2 years ago - 1 comment

#51 - Questionable ops search results

Issue - State: closed - Opened by hinerm over 2 years ago - 7 comments

#50 - Thresholding fails with unhelpful message

Issue - State: open - Opened by hinerm over 2 years ago

#49 - Support ImagePlus parameters

Issue - State: open - Opened by hinerm over 2 years ago - 5 comments

#48 - Rename duplicate "Run" buttons

Issue - State: closed - Opened by hinerm over 2 years ago - 9 comments

#47 - Put run widgets in scroll pane

Issue - State: open - Opened by hinerm over 2 years ago - 3 comments

#46 - Consolidate duplicate search results

Issue - State: closed - Opened by hinerm over 2 years ago - 6 comments

#45 - Disable original ImageJ support for the initial release

Issue - State: closed - Opened by ctrueden over 2 years ago

#44 - Add a label below the search bar that says "DEVELOPER PREVIEW ONLY", to manage expectations

Issue - State: closed - Opened by ctrueden over 2 years ago - 2 comments

#43 - Add a button to pop the ImageJ2 main window when not in headless mode

Issue - State: closed - Opened by ctrueden over 2 years ago - 2 comments

#42 - Handle BOTH ModuleItems in a better way

Issue - State: closed - Opened by ctrueden over 2 years ago - 10 comments

#41 - Fix MacOS support

Pull Request - State: closed - Opened by gselzer over 2 years ago - 3 comments

#40 - Allow multiple returns from SciJava module execution

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment
Labels: enhancement

#39 - Make a unified search for napari and integrate napari-imagej with it

Issue - State: open - Opened by ctrueden over 2 years ago

#38 - Account for ModuleItem.getChoices() being null

Pull Request - State: closed - Opened by gselzer over 2 years ago

#37 - Better keyboard behavior

Issue - State: closed - Opened by ctrueden over 2 years ago
Labels: enhancement

#36 - PR revisions

Pull Request - State: closed - Opened by gselzer over 2 years ago - 2 comments

#35 - Add support for SciJava Parameter styles

Pull Request - State: closed - Opened by gselzer over 2 years ago - 2 comments

#34 - Fix flaking

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#33 - Fix parameter metadata

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#32 - SciJava Parameter Metadata exception mishandling.

Issue - State: closed - Opened by gselzer over 2 years ago

#31 - Clean the code with additional Github Actions

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#30 - Replace raw thread usage with ThreadPool

Pull Request - State: closed - Opened by gselzer over 2 years ago

#29 - Improve TypeMappings/python_type_of

Issue - State: closed - Opened by gselzer over 2 years ago - 2 comments

#28 - Test coverage revisions

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#27 - Consider multiprocessing for ImageJ startup

Issue - State: closed - Opened by gselzer over 2 years ago - 11 comments

#26 - Source and Javadoc buttons

Issue - State: closed - Opened by ctrueden over 2 years ago - 3 comments

#25 - Be explicit with TypeMappings python types

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment

#24 - NPE from napari-imagej upon shutdown

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment

#23 - Address review comments on merged PRs

Issue - State: closed - Opened by gselzer over 2 years ago

#22 - Fix WIP commits on the main branch

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment

#21 - if isinstance(py_value, Collection) returns true for strings

Issue - State: closed - Opened by gselzer over 2 years ago - 2 comments

#20 - Allow for multiple module returns

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment

#19 - Test ImgLabeling <->Labels conversions

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment

#18 - GitHub Actions: Test conda more thoroughly

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment

#17 - Re-enable MacOS support

Issue - State: closed - Opened by gselzer over 2 years ago - 16 comments

#16 - Allow users to specify their ImageJ distribution

Issue - State: closed - Opened by gselzer over 2 years ago - 3 comments

#15 - Align project with recommended package structure

Pull Request - State: closed - Opened by gselzer over 2 years ago - 3 comments

#14 - Add `Tracks` conversion

Issue - State: closed - Opened by gselzer over 2 years ago - 5 comments

#13 - Add primitive array support

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#12 - Add support for Points layer

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#11 - Clean napari-imagej and increase test coverage

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#10 - Remove "ambiguous" src directory

Issue - State: closed - Opened by gselzer over 2 years ago - 1 comment

#9 - Associate napari's ColorMap with ImageJ's LUTs

Issue - State: closed - Opened by gselzer over 2 years ago

#8 - Retain module data

Pull Request - State: closed - Opened by gselzer over 2 years ago - 1 comment

#7 - Resolve segfaults in magicgui widget creation with JVM running.

Issue - State: open - Opened by gselzer almost 3 years ago - 5 comments

#6 - Resolve preallocated outputs

Issue - State: closed - Opened by gselzer almost 3 years ago - 8 comments

#5 - Add support for ROI conversion

Pull Request - State: closed - Opened by gselzer almost 3 years ago - 6 comments

#4 - Add Java <-> napari converters for ImgLabelings

Pull Request - State: closed - Opened by gselzer almost 3 years ago - 4 comments

#3 - Rewrite ImageJ Napari Plugin as an npe2 widget, with a single Search Bar plugin

Pull Request - State: closed - Opened by gselzer almost 3 years ago - 6 comments

#2 - Support nested menu structure

Issue - State: closed - Opened by ctrueden over 3 years ago - 2 comments

#1 - Map SciJava module metadata to magicgui

Issue - State: closed - Opened by ctrueden over 3 years ago - 4 comments

GitHub / imagej/napari-imagej issues and pull requests