Ecosyste.ms: Issues

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GitHub / imagej/napari-imagej issues and pull requests

#313 - Display 3D mutlichannel images

Pull Request - State: closed - Opened by gselzer 12 days ago - 1 comment
Labels: enhancement

#312 - WIP: New image, v2

Pull Request - State: open - Opened by gselzer 17 days ago
Labels: enhancement

#311 - Update Use Cases to 0.2.0

Pull Request - State: closed - Opened by gselzer 17 days ago - 3 comments

#310 - SciJava Table outputs create new rows on error

Issue - State: open - Opened by gselzer 18 days ago
Labels: bug

#309 - Enable RGB image transfer

Pull Request - State: closed - Opened by gselzer 18 days ago - 1 comment
Labels: bug

#308 - Test local installations

Issue - State: open - Opened by gselzer 22 days ago - 1 comment
Labels: bug

#307 - Napari doesn't quit when wrapping a local install

Issue - State: open - Opened by hinerm 22 days ago - 3 comments
Labels: bug

#306 - Attach Points as ROI in Data Translation

Pull Request - State: open - Opened by gselzer 25 days ago - 1 comment

#305 - Permute points dimensions

Pull Request - State: closed - Opened by gselzer 26 days ago - 2 comments
Labels: bug

#304 - Enable xarray v2024.10.0+

Issue - State: open - Opened by gselzer about 1 month ago
Labels: bug

#303 - Add widgets for Java Number implementations

Pull Request - State: closed - Opened by gselzer about 1 month ago
Labels: enhancement

#302 - Points layer dimensions are not permuted when converted

Issue - State: closed - Opened by gselzer about 1 month ago - 4 comments
Labels: bug

#301 - Arrows to import layers from napari to ImageJ are missing

Issue - State: closed - Opened by paulacauhy about 1 month ago - 5 comments

#300 - Build widgets for optional Module parameters

Issue - State: open - Opened by gselzer about 2 months ago
Labels: enhancement

#299 - Use Ruff!

Pull Request - State: closed - Opened by gselzer about 2 months ago
Labels: enhancement

#298 - Import/export buttons are too large in the documentation

Issue - State: closed - Opened by gselzer about 2 months ago - 1 comment
Labels: enhancement

#297 - Consider scripting integration with the napari console

Issue - State: open - Opened by gselzer about 2 months ago - 2 comments
Labels: enhancement

#296 - Load icons from the Web

Issue - State: open - Opened by gselzer 2 months ago
Labels: bug

#295 - Bump various versions

Pull Request - State: closed - Opened by gselzer 2 months ago
Labels: enhancement

#294 - Bump minimum python version to 3.9.X, bump napari to >0.5.0

Issue - State: closed - Opened by gselzer 4 months ago - 2 comments

#293 - QTextEdit.setLineWrapMode called with incorrect arguments

Issue - State: closed - Opened by gselzer 4 months ago - 2 comments
Labels: bug

#292 - MacOS support?

Issue - State: open - Opened by mpm896 10 months ago - 1 comment

#290 - Switch SearchResult display to model/view paradigm

Pull Request - State: closed - Opened by gselzer over 1 year ago - 4 comments
Labels: enhancement

#289 - Make napari-imagej recommend net.imagej:imagej:2.10.0+

Issue - State: closed - Opened by ctrueden over 1 year ago

#288 - Consider adding an "active image layer properties" editor for dimensional metadata

Issue - State: open - Opened by ctrueden over 1 year ago
Labels: enhancement

#287 - Add napari reader that uses SciJava/SCIFIO under the hood

Issue - State: open - Opened by ctrueden over 1 year ago - 4 comments
Labels: enhancement

#286 - Run original ImageJ commands directly

Issue - State: open - Opened by ctrueden over 1 year ago - 3 comments

#285 - Disambiguate more clearly between original ImageJ commands and SciJava modules

Issue - State: closed - Opened by ctrueden over 1 year ago - 4 comments

#284 - Search results should show icons to help disambiguate

Issue - State: closed - Opened by ctrueden over 1 year ago - 2 comments
Labels: enhancement

#283 - Sync changes from ImageWindow back to Python more robustly

Issue - State: open - Opened by ctrueden over 1 year ago
Labels: bug

#282 - String module outputs are crammed into a single line and can be unreadable

Issue - State: open - Opened by ctrueden over 1 year ago - 1 comment
Labels: enhancement

#281 - input widgets do not remember previously entered values

Issue - State: open - Opened by ctrueden over 1 year ago
Labels: bug

#280 - magic_gui floating point fields are fixed at two decimal points

Issue - State: open - Opened by ctrueden over 1 year ago
Labels: bug

#279 - magic_gui char fields allow typing more than one character

Issue - State: open - Opened by ctrueden over 1 year ago
Labels: bug

#278 - RGB images sent to ImageJ should use composite mode to preserve color

Issue - State: closed - Opened by ctrueden over 1 year ago - 1 comment
Labels: enhancement

#276 - Numeric type inputs have undesirable bounds

Issue - State: closed - Opened by ctrueden over 1 year ago - 1 comment
Labels: bug

#275 - Toggling "Use active layer" in napari settings should not require a restart

Issue - State: closed - Opened by ctrueden over 1 year ago - 1 comment
Labels: enhancement

#274 - Add preferred max heap size setting to settings, and autodetect a good value by default

Issue - State: open - Opened by ctrueden over 1 year ago - 1 comment
Labels: enhancement

#273 - napari-imagej widget width grows wider when selecting op search results with long names

Issue - State: open - Opened by ctrueden over 1 year ago - 1 comment
Labels: bug

#271 - Search results should show full menu path

Issue - State: open - Opened by ctrueden over 1 year ago - 1 comment
Labels: enhancement

#270 - Remove usages of isjava

Pull Request - State: closed - Opened by ctrueden over 1 year ago

#269 - napari-imagej crashes when used via the napari bundle

Issue - State: open - Opened by ctrueden over 1 year ago

#268 - Update all documentation images before 0.2.0 release

Issue - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: documentation

#267 - Add detailed image transfer as a separate button

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: enhancement

#266 - Use flake8-pyproject conda package

Pull Request - State: closed - Opened by ctrueden over 1 year ago - 1 comment

#265 - Add a REPL widget that supports the SciJava ScriptREPL

Pull Request - State: closed - Opened by kephale over 1 year ago - 11 comments

#264 - Add recommended_versions

Pull Request - State: closed - Opened by gselzer over 1 year ago - 5 comments
Labels: enhancement

#263 - Assign reasonable axis defaults from napari Image layers

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment

#262 - Discovering Commands that aren't visible

Issue - State: closed - Opened by kephale over 1 year ago - 2 comments

#261 - Provide sensible axis defaults for Java images converted from napari layers

Issue - State: closed - Opened by gselzer over 1 year ago
Labels: bug

#260 - Describe python component versions in the use cases

Issue - State: closed - Opened by gselzer over 1 year ago
Labels: documentation

#259 - Expose combined Python/Java versions via the napari menu

Issue - State: open - Opened by gselzer over 1 year ago
Labels: documentation, enhancement

#258 - Show UI on the GUI thread

Pull Request - State: closed - Opened by gselzer over 1 year ago
Labels: bug

#256 - Debugging strategy?

Issue - State: closed - Opened by kephale over 1 year ago - 4 comments

#255 - ImageJ Ops thresholds return images of DoubleType

Issue - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#254 - Clean up image conversions

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#253 - Preserve axis labels within napari layers

Issue - State: open - Opened by gselzer over 1 year ago - 8 comments
Labels: bug, blocked

#252 - Clean up image conversions

Issue - State: closed - Opened by gselzer over 1 year ago
Labels: bug

#251 - confuse: avoid reading in constructor

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#250 - Append module name to uninformative output names

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: enhancement

#249 - Ensure that Python exceptions during initialization are also printed

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#248 - napari-imagej readthedocs.io site blocked by opendns/Cisco

Issue - State: closed - Opened by kephale over 1 year ago - 3 comments

#247 - Fix Pyproject.toml links

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#246 - Give new output layers better names

Issue - State: closed - Opened by ctrueden over 1 year ago
Labels: enhancement

#245 - Test code erroneously loads user settings

Issue - State: closed - Opened by ctrueden over 1 year ago
Labels: bug

#244 - Use a modal dialog to display Java-side errors

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#243 - How to safely use pyimagej and napari-imagej within a Python script

Issue - State: closed - Opened by kephale over 1 year ago - 6 comments

#242 - Reverse dimensionality in meshes

Pull Request - State: closed - Opened by gselzer over 1 year ago
Labels: bug

#241 - Programmatically calling search results

Issue - State: open - Opened by kephale over 1 year ago - 6 comments

#240 - Add BoneJ2 use case

Pull Request - State: closed - Opened by kephale over 1 year ago - 3 comments

#239 - Improve TrackMate use case

Pull Request - State: closed - Opened by ctrueden over 1 year ago - 2 comments

#238 - Programmatically setting endpoint in scripts

Issue - State: closed - Opened by kephale over 1 year ago - 2 comments

#237 - double[] gauss ops don't run on sample data

Issue - State: closed - Opened by hinerm over 1 year ago - 5 comments
Labels: bug

#236 - Set a higher maximum for new output images

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#235 - Improve settings dialog labels

Pull Request - State: closed - Opened by ctrueden over 1 year ago
Labels: documentation

#233 - Computer ops do not prevent user from selecting out == in

Issue - State: open - Opened by ctrueden over 1 year ago - 3 comments
Labels: bug

#232 - New image button raises exception

Issue - State: closed - Opened by ctrueden over 1 year ago - 6 comments

#231 - `import imagej` crashes napari REPL

Issue - State: closed - Opened by ctrueden over 1 year ago - 2 comments

#230 - Misc pre release changes

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: enhancement

#228 - Write installation instructions for production pathways

Pull Request - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: documentation, blocked

#222 - Commands need to be scripts subdir for discovery

Issue - State: closed - Opened by hinerm over 1 year ago - 1 comment

#220 - Remove workaround when ConvertService can operate on python types

Issue - State: closed - Opened by hinerm over 1 year ago - 4 comments

#215 - Make progress cancelable once napari 0.5.0 comes out

Issue - State: open - Opened by gselzer over 1 year ago
Labels: enhancement, blocked

#211 - Error with SNT endpoint

Issue - State: closed - Opened by kephale over 1 year ago - 3 comments

#210 - List<Shape> Module parameter interpreted as napari layer

Issue - State: open - Opened by gselzer over 1 year ago - 3 comments
Labels: bug

#208 - Abstract out configuration logic

Issue - State: closed - Opened by hinerm over 1 year ago - 2 comments

#204 - Sporadic test hanging due to progress bars on MacOS

Issue - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: bug

#201 - Reduce verbosity of NapariEventSubscriber

Issue - State: closed - Opened by gselzer over 1 year ago - 1 comment
Labels: enhancement

#198 - Marching cubes output is not aligned

Issue - State: closed - Opened by kephale over 1 year ago - 5 comments

#171 - Update Installation Documentation post 0.1.0

Issue - State: closed - Opened by gselzer almost 2 years ago
Labels: documentation, enhancement

#166 - filter.tubeness(img, img, number, double[]) cannot be called

Issue - State: closed - Opened by gselzer almost 2 years ago - 6 comments
Labels: bug, blocked

#152 - Support (original) ImageJ ROI and Overlay

Issue - State: closed - Opened by gselzer almost 2 years ago - 2 comments
Labels: enhancement

#131 - napari RGB images becomes 3D stack in imagej with x = color component

Issue - State: closed - Opened by NicoKiaru about 2 years ago - 10 comments
Labels: question

#127 - Mutable Layers aren't auto-contrasted

Issue - State: closed - Opened by gselzer about 2 years ago - 9 comments
Labels: bug

#119 - Can't run threshold command

Issue - State: closed - Opened by hinerm about 2 years ago - 2 comments

#113 - Clearing the search bar still yields script template results

Issue - State: closed - Opened by ctrueden about 2 years ago - 4 comments
Labels: bug