ilogue/niprov issues and pull requests

#182 - mongo db shows update deprecated

Issue - State: open - Opened by mrjeffs about 7 years ago - 1 comment

#181 - provenance serve crashes

Issue - State: closed - Opened by mrjeffs over 7 years ago - 3 comments

#180 - Support for .nrrd format

Issue - State: open - Opened by ilogue over 7 years ago
Labels: enhancement

#179 - Camera silent in interactive mode

Pull Request - State: closed - Opened by ilogue over 7 years ago - 2 comments

#178 - Inspection launches interactive pyplot windows

Issue - State: closed - Opened by ktavabi over 7 years ago - 1 comment
Labels: bug, minor

#177 - niprov crashes with nrrd file conversion

Issue - State: closed - Opened by mrjeffs over 7 years ago - 5 comments
Labels: bug, minor

#176 - how to store one or more object contents when logging

Issue - State: closed - Opened by mrjeffs over 7 years ago - 2 comments
Labels: question

#175 - Support proj fif

Pull Request - State: closed - Opened by ktavabi over 7 years ago

#174 - FIX:mnepy io error handling

Pull Request - State: closed - Opened by ktavabi over 7 years ago

#173 - Add support for proj.fif

Issue - State: closed - Opened by ktavabi over 7 years ago

#172 - MNE-python IO error

Issue - State: closed - Opened by ktavabi over 7 years ago

#171 - Mongo db error

Issue - State: closed - Opened by ktavabi almost 8 years ago - 8 comments
Labels: bug

#170 - Differentiate between FIF file types.

Pull Request - State: closed - Opened by ilogue almost 8 years ago - 3 comments

#169 - FIX:adding test fif file types for accurate tracking

Pull Request - State: closed - Opened by ktavabi almost 8 years ago - 1 comment

#168 - add bash function to .bashrc in setup.py for cmd line logging

Issue - State: open - Opened by mrjeffs almost 8 years ago - 1 comment

#167 - look into COBIDAS

Issue - State: open - Opened by ilogue almost 8 years ago

#166 - add SPAR et al support

Issue - State: open - Opened by ilogue almost 8 years ago
Labels: enhancement, minor

#165 - Niprov version as a provenance field

Pull Request - State: closed - Opened by ilogue almost 8 years ago

#164 - niprov version as provenance field

Issue - State: closed - Opened by ilogue almost 8 years ago
Labels: enhancement, minor

#163 - Complains about missing package for testdata when logging.

Issue - State: open - Opened by ilogue almost 8 years ago - 1 comment
Labels: bug

#162 - Screenshots for README

Issue - State: closed - Opened by ilogue about 8 years ago - 2 comments
Labels: aesthetics

#161 - Miscellaneous bugfixes before 0.5 release

Pull Request - State: closed - Opened by ilogue about 8 years ago

#160 - JsonFormat should skip ObjectId

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: bug, minor

#159 - Update readme

Issue - State: closed - Opened by ilogue about 8 years ago - 1 comment
Labels: enhancement, minor, documentation

#158 - Rename Context to ProvenanceContext and methods have complete signatures

Pull Request - State: closed - Opened by ilogue about 8 years ago

#157 - DicomFile.hasFile() implemented

Pull Request - State: closed - Opened by ilogue about 8 years ago

#156 - determineUser should be in add() not log()

Issue - State: open - Opened by ilogue about 8 years ago
Labels: enhancement

#155 - AttributeError: 'DicomFile' object has no attribute 'hasFile'

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: bug, minor

#154 - Create location, hash, shortid indices on mongodb

Issue - State: open - Opened by ilogue about 8 years ago
Labels: enhancement

#153 - Copy as parent

Pull Request - State: closed - Opened by ilogue about 8 years ago

#152 - Mongo version issue: invalid operator: $search

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: bug, minor

#151 - Fixes to Mongo Repository involving search() and allX() functionatities.

Pull Request - State: closed - Opened by ilogue about 8 years ago

#150 - Create mongodb setup guide in docs

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: enhancement, minor

#149 - Mongodb OperationFailure: ns name too long, max size is 128

Issue - State: closed - Opened by ilogue about 8 years ago - 1 comment
Labels: bug, minor

#148 - mongo don't inflate if not a record but a value string

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: bug, minor

#147 - History of file versions at same location.

Pull Request - State: closed - Opened by ilogue about 8 years ago - 1 comment

#146 - Web views and Query methods to get all modalities, projects and users.

Pull Request - State: closed - Opened by ilogue about 8 years ago

#145 - 'Browse' page with lists of modalities, projects, users

Issue - State: closed - Opened by ilogue about 8 years ago - 1 comment
Labels: enhancement

#144 - Full text search

Pull Request - State: closed - Opened by ilogue about 8 years ago

#143 - Browse and export by project, user, modality

Pull Request - State: closed - Opened by ilogue about 8 years ago

#142 - Full text search

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: enhancement

#141 - Improved snapshot plotting

Issue - State: open - Opened by ilogue about 8 years ago
Labels: enhancement

#140 - export and web link to get files by "user"

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: enhancement

#139 - Fix for relative paths of parents and clearer error if file not found

Pull Request - State: closed - Opened by ilogue about 8 years ago

#138 - windows executable

Issue - State: open - Opened by ilogue about 8 years ago
Labels: enhancement, major

#137 - web interface interactive features; adding, logging, recording

Issue - State: open - Opened by ilogue about 8 years ago
Labels: enhancement, major

#136 - Snapshots and views of images

Pull Request - State: closed - Opened by ilogue about 8 years ago - 2 comments

#135 - inconsistent dealing with relative paths causes errors

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: bug, minor

#134 - [doc] Added user field to list of provenance fields

Pull Request - State: closed - Opened by ilogue about 8 years ago

#133 - import niprov fails in script but works in ipython

Issue - State: closed - Opened by mrjeffs about 8 years ago - 15 comments

#132 - Diff getSame() and getSameString() methods.

Pull Request - State: closed - Opened by ilogue about 8 years ago

#131 - Parrec multiple TRs and numpy.ndarray provenance fields

Pull Request - State: closed - Opened by ilogue about 8 years ago

#130 - Repositories must convert arrays to lists or warn if user passes array

Issue - State: closed - Opened by ilogue about 8 years ago - 1 comment

#129 - new nibabel version crashes niprov

Issue - State: closed - Opened by mrjeffs about 8 years ago

#128 - Export as pandas dataframe

Issue - State: open - Opened by ilogue about 8 years ago

#127 - Context dependencies related bug fix

Pull Request - State: closed - Opened by ilogue about 8 years ago

#126 - Update heritable fields (water fat shift, subject position, duration)

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: enhancement, minor

#125 - New fields: duration, subject-position, sampling-frequency and water-fat-shift

Pull Request - State: closed - Opened by ilogue about 8 years ago - 1 comment

#124 - Add new fields; duration, subject-position, water-fat-shift, subject-orientation

Issue - State: closed - Opened by ilogue about 8 years ago - 4 comments
Labels: enhancement, minor

#123 - Diff can provide fields that are equal; Diff.getSame()

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: enhancement, minor

#122 - More fields for PARREC

Issue - State: open - Opened by ilogue about 8 years ago
Labels: enhancement, minor

#121 - Cleanup doc files

Issue - State: open - Opened by ilogue about 8 years ago
Labels: minor, documentation

#120 - Rename Context class to avoid namespace conflict, full method signatures

Issue - State: closed - Opened by ilogue about 8 years ago
Labels: enhancement, minor

#119 - Diffing / comparison

Issue - State: closed - Opened by ilogue over 8 years ago
Labels: enhancement, major

#118 - Diffing provenance records

Pull Request - State: closed - Opened by ilogue over 8 years ago - 1 comment

#117 - numpy attribute not inherited

Pull Request - State: closed - Opened by ktavabi over 8 years ago

#116 - Redo fix

Pull Request - State: closed - Opened by ktavabi over 8 years ago - 5 comments

#115 - numpy attribute not inherited

Pull Request - State: closed - Opened by ktavabi over 8 years ago

#114 - mnefun: Creating custom provenance dictionary separately for each subject

Pull Request - State: closed - Opened by ilogue over 8 years ago

#113 - mongo db duplicate key error

Issue - State: closed - Opened by ktavabi over 8 years ago - 5 comments
Labels: bug, minor

#112 - Store user responsible for provenance

Pull Request - State: closed - Opened by ilogue over 8 years ago

#111 - Subquery, or search by multiple criteria

Issue - State: open - Opened by ilogue over 8 years ago - 1 comment
Labels: enhancement

#110 - "Modality" / "type" field and Query by modality

Issue - State: closed - Opened by ilogue over 8 years ago
Labels: enhancement

#109 - Query by Project

Issue - State: closed - Opened by ilogue over 8 years ago
Labels: enhancement

#108 - Fixing acceptance tests after mnefun work

Pull Request - State: closed - Opened by ilogue over 8 years ago

#107 - Distinguish .fif files and use appropriate method to read them; MEG child files mis-categroized

Issue - State: closed - Opened by ktavabi over 8 years ago - 1 comment
Labels: bug

#106 - Support for sub-sampling subjects

Pull Request - State: closed - Opened by ktavabi over 8 years ago

#105 - Fix permissions

Pull Request - State: closed - Opened by ktavabi over 8 years ago - 4 comments

#104 - IO Error

Issue - State: closed - Opened by ktavabi over 8 years ago - 4 comments

#103 - Mnefun firstgo

Pull Request - State: closed - Opened by ktavabi over 8 years ago - 2 comments

#102 - Look into pipeline web app

Issue - State: open - Opened by ilogue over 8 years ago

#101 - Pretty print dict fields such as mnefun params

Pull Request - State: closed - Opened by ilogue over 8 years ago

#100 - Got a new one

Issue - State: closed - Opened by ktavabi over 8 years ago - 3 comments
Labels: bug, minor

#99 - Fixes #98. If library dependency unavailable, FileFactory still passes provenance

Pull Request - State: closed - Opened by ilogue over 8 years ago - 1 comment

#98 - Some files end up without ID in database.

Issue - State: closed - Opened by ilogue over 8 years ago - 2 comments
Labels: bug, minor

#97 - ENH replace unkown parent rt error with add unknown method on listener

Pull Request - State: closed - Opened by ktavabi over 8 years ago - 2 comments

#96 - Uniformative runtime error(s)

Issue - State: open - Opened by ktavabi over 8 years ago - 9 comments
Labels: enhancement, minor

#95 - Added new www icon

Pull Request - State: closed - Opened by ilogue over 8 years ago

#94 - Read permission errors

Issue - State: open - Opened by ktavabi over 8 years ago - 2 comments
Labels: bug, minor

#93 - Pretty print dict

Issue - State: closed - Opened by ktavabi over 8 years ago
Labels: enhancement, minor

#92 - test same file names from diff hosts with sha1

Issue - State: closed - Opened by mrjeffs over 8 years ago - 10 comments
Labels: enhancement, major

#91 - dipy integration

Issue - State: open - Opened by ilogue over 8 years ago
Labels: enhancement, major

#84 - export to BIDS format (json metadata file)

Issue - State: open - Opened by ilogue over 8 years ago - 1 comment
Labels: enhancement

#76 - backup and export should be able to export all records

Issue - State: closed - Opened by ilogue over 8 years ago - 1 comment
Labels: enhancement, minor

#71 - Expand W3C PROV implementation

Issue - State: open - Opened by ilogue over 8 years ago - 1 comment
Labels: enhancement, minor, reference

#70 - Streamline / refactor query functionality

Issue - State: closed - Opened by ilogue over 8 years ago - 1 comment
Labels: refactor

#67 - Files are created by users (agents)

Issue - State: closed - Opened by ilogue over 8 years ago - 1 comment
Labels: enhancement, major

#61 - Overwriting files; file provenance history

Issue - State: closed - Opened by ilogue over 8 years ago - 1 comment
Labels: enhancement, major

#53 - git integration with log code

Issue - State: open - Opened by mrjeffs over 8 years ago - 1 comment
Labels: enhancement, major

#49 - Unknown FIle error

Issue - State: closed - Opened by ktavabi over 8 years ago - 2 comments
Labels: bug

GitHub / ilogue/niprov issues and pull requests