Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / illumina/reviewer issues and pull requests

#67 - Interpretation issue

Issue - State: open - Opened by esthernmolina 6 months ago - 1 comment

#65 - Invalid contig name for alternate contigs

Issue - State: open - Opened by maxmilianr 11 months ago

#64 - Complilation error

Issue - State: open - Opened by ysayyed11 11 months ago - 2 comments

#63 - [error] Failed to extract reads from the specified region

Issue - State: closed - Opened by Tintest about 1 year ago - 2 comments

#62 - Diplotype score in phasing.tsv

Issue - State: open - Opened by hopedisastro over 1 year ago

#61 - (add) create dockerfile for the tool

Pull Request - State: closed - Opened by geocarvalho over 1 year ago

#60 - Error fix

Issue - State: open - Opened by gokudousan over 1 year ago

#59 - metrics.tsv AlleleDepth of head and v0.2.7 deviate significant

Issue - State: closed - Opened by maarten-k almost 2 years ago - 1 comment

#58 - [E::bgzf_read_block] Invalid BGZF header at offset 590043

Issue - State: open - Opened by Tine-dk about 2 years ago

#57 - Issues building from source with cmake

Issue - State: open - Opened by sheinasim about 2 years ago - 5 comments

#56 - Allow compressed VCFs

Issue - State: open - Opened by dnil about 2 years ago

#55 - Repeat units differ significantly in VCF and SVG

Issue - State: closed - Opened by marc-sturm over 2 years ago - 2 comments

#54 - [error] No VCF record for C9ORF72

Issue - State: open - Opened by mital14 over 2 years ago - 4 comments

#53 - unable to find the compatible libcurl4

Issue - State: closed - Opened by mital14 over 2 years ago - 1 comment

#52 - Process all loci in variant catalog if --locus arg not specified

Issue - State: open - Opened by bw2 over 2 years ago

#51 - Remove error about N's in the reference context.

Pull Request - State: closed - Opened by bw2 over 2 years ago - 2 comments

#50 - BAM alignments are required to have "XG" auxiliary tag

Issue - State: open - Opened by rxw125 over 2 years ago

#49 - Rng seed

Pull Request - State: closed - Opened by sclamons over 2 years ago

#48 - Error handling and warning for unsupported loci with small variants.

Pull Request - State: closed - Opened by sclamons over 2 years ago

#47 - [error] Failed to extract reads from the specified region

Issue - State: closed - Opened by Jolleboll over 2 years ago - 5 comments

#45 - fix gcc 11 build break

Pull Request - State: closed - Opened by fo40225 almost 3 years ago

#44 - Unable to create path

Issue - State: open - Opened by deepseq almost 3 years ago - 4 comments

#43 - "Missing flanking read fragments"

Issue - State: open - Opened by hchetia almost 3 years ago - 2 comments

#42 - Strand bias (QC metric) in REViewer

Issue - State: open - Opened by mdanzi almost 3 years ago

#41 - Add metrics docs

Pull Request - State: closed - Opened by egor-dolzhenko almost 3 years ago

#40 - Report metrics and phasing information

Pull Request - State: closed - Opened by egor-dolzhenko almost 3 years ago - 4 comments

#39 - Remove fmt library requirement

Pull Request - State: closed - Opened by egor-dolzhenko almost 3 years ago

#38 - Output metrics to a single file

Pull Request - State: closed - Opened by egor-dolzhenko almost 3 years ago - 1 comment

#37 - Allelic Depth (QC metrics) in REViewer

Issue - State: open - Opened by a7420174 almost 3 years ago - 7 comments

#36 - JSON metrics output

Pull Request - State: closed - Opened by egor-dolzhenko almost 3 years ago - 4 comments

#36 - JSON metrics output

Pull Request - State: closed - Opened by egor-dolzhenko almost 3 years ago - 4 comments

#35 - Error out when no alignments remain after clipping

Pull Request - State: closed - Opened by egor-dolzhenko almost 3 years ago

#34 - Build fails due to fmt

Issue - State: open - Opened by robertzeibich almost 3 years ago - 6 comments

#33 - Ambiguous code vis

Pull Request - State: closed - Opened by sclamons almost 3 years ago

#32 - Allele depth

Pull Request - State: closed - Opened by egor-dolzhenko about 3 years ago - 1 comment

#31 - Regression tests + .gitignore

Pull Request - State: closed - Opened by sclamons about 3 years ago - 1 comment

#30 - Add SNP calling workflow placeholder

Pull Request - State: closed - Opened by egor-dolzhenko about 3 years ago - 2 comments

#29 - Code cleanup

Pull Request - State: closed - Opened by egor-dolzhenko about 3 years ago

#28 - Segmentation fault (core dumped)

Issue - State: closed - Opened by hchetia about 3 years ago - 3 comments

#27 - Graph Interpretation

Issue - State: closed - Opened by hchetia about 3 years ago - 8 comments

#26 - option to display confidence intervals in image

Issue - State: open - Opened by bw2 about 3 years ago - 1 comment

#24 - Transfer build changes from EH

Pull Request - State: closed - Opened by ctsa about 3 years ago

#23 - Region extension length

Pull Request - State: closed - Opened by egor-dolzhenko about 3 years ago

#22 - Display degenerate base pairs

Issue - State: open - Opened by mfbennett over 3 years ago - 1 comment

#21 - Bamlet generation for Reviewer viewing

Issue - State: closed - Opened by hchetia over 3 years ago - 3 comments

#20 - Installation error

Issue - State: closed - Opened by hchetia over 3 years ago - 6 comments

#19 - Repeat-size interval visualisation

Issue - State: open - Opened by kibanez over 3 years ago
Labels: enhancement

#18 - CMakeLists.txt file has the wrong n old download link for Boost app

Issue - State: closed - Opened by katerinaoleynikova over 3 years ago - 1 comment

#17 - What is the difference between GraphAlignmentViewer and REViewer?

Issue - State: closed - Opened by fjmuzengyiheng over 3 years ago - 2 comments

#16 - bintray link doesn't seem to work!

Issue - State: open - Opened by A97paupic over 3 years ago - 4 comments

#15 - Bases shown despite matching the reference

Issue - State: closed - Opened by bw2 over 3 years ago - 2 comments

#14 - Can't Process example in ExpansionHunter

Issue - State: closed - Opened by JackChuangTaiwan over 3 years ago - 3 comments

#13 - Output phasing info

Pull Request - State: closed - Opened by egor-dolzhenko over 3 years ago

#12 - Problem related to the pre-installed software and packages

Issue - State: open - Opened by katerinaoleynikova over 3 years ago - 5 comments

#11 - How to launch test data retrieved from Expansion Hunter repository

Issue - State: closed - Opened by katerinaoleynikova almost 4 years ago - 2 comments

#10 - Possibility to visualize more than 1 locus

Issue - State: open - Opened by katerinaoleynikova almost 4 years ago - 8 comments
Labels: enhancement

#9 - Does REViewer work for ExpansionHunterDeNovo?

Issue - State: open - Opened by moldach almost 4 years ago - 1 comment

#7 - Phasing info text file

Issue - State: open - Opened by LiaD-rt almost 4 years ago
Labels: enhancement

#6 - [error] Failed to extract reads from the specified region

Issue - State: closed - Opened by katerinaoleynikova almost 4 years ago - 5 comments

#5 - Adding secondary info for checking read and mapping quality

Issue - State: open - Opened by bw2 almost 4 years ago - 1 comment
Labels: enhancement

#4 - link to blog post in the README

Issue - State: closed - Opened by bw2 almost 4 years ago - 2 comments

#3 - Does REViewer plot reads from off-target regions?

Issue - State: open - Opened by bw2 almost 4 years ago - 2 comments
Labels: bug

#2 - stoi: no conversion error

Issue - State: open - Opened by bw2 almost 4 years ago - 3 comments
Labels: bug

#1 - Add --vcf to README Usage section.

Issue - State: closed - Opened by bw2 almost 4 years ago - 1 comment